BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0087.0013.p (347 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_767710.1| dioxygenase [Bradyrhizobium japonicum USDA 110]... 630 e-179 ref|YP_004107494.1| Rieske (2Fe-2S) iron-sulfur domain [Rhodopse... 615 e-174 ref|YP_001990190.1| phthalate 4,5-dioxygenase [Rhodopseudomonas ... 610 e-172 ref|NP_946334.1| phthalate dioxygenase [Rhodopseudomonas palustr... 607 e-172 ref|YP_485884.1| Rieske (2Fe-2S) protein [Rhodopseudomonas palus... 601 e-170 >ref|NP_767710.1| dioxygenase [Bradyrhizobium japonicum USDA 110] dbj|BAC46335.1| bll1070 [Bradyrhizobium japonicum USDA 110] Length = 452 Score = 630 bits (1626), Expect = e-179, Method: Compositional matrix adjust. Identities = 297/326 (91%), Positives = 305/326 (93%) Query: 22 KGGILWAYLGEGAPPAFPELDCFVAPGSHTFAFKGHMNCNWLQALEVGIDPAHASYLHRF 81 K GILWAYLGEG PPAFPE+DCFVAP +HTFAFKGHM CNWLQALEVGIDPAHASYLHRF Sbjct: 127 KSGILWAYLGEGEPPAFPEIDCFVAPDTHTFAFKGHMACNWLQALEVGIDPAHASYLHRF 186 Query: 82 FEDEDTSAAYGKQFRGASAGSDMPMTKILREYDRPIINVEHTEYGLRLIALRELDAERTH 141 FEDEDTS AYGKQFRGASAGSD+PMTKILREYDRPIINVEHTEYGLRLIALRE+D ERTH Sbjct: 187 FEDEDTSTAYGKQFRGASAGSDLPMTKILREYDRPIINVEHTEYGLRLIALREIDEERTH 246 Query: 142 VRVTNQLFPHGFVIPMSTEMTITQWHVPVDDENCYWYAIFTSYAAPVDKQKMRDQRLELY 201 VRVTNQLFPHGFVIPMSTEMTITQWHVPVDDENCYWYAIFTSY PVDK+KMRDQRLELY Sbjct: 247 VRVTNQLFPHGFVIPMSTEMTITQWHVPVDDENCYWYAIFTSYTNPVDKKKMRDQRLELY 306 Query: 202 TLPDYKSRKNKSNDYGFDPHEQATETYTGMGTDINVHDQWAVESMGPIQDRTNEHLGQSD 261 LPDYKSRKN NDYGFDPHEQ T TYTGMG DINVHDQWAVESMG IQDRT EHLGQSD Sbjct: 307 ELPDYKSRKNSGNDYGFDPHEQQTATYTGMGNDINVHDQWAVESMGAIQDRTKEHLGQSD 366 Query: 262 KAIVQYRRLLRQEIEKVAGGEKPMLFLDEASARSIQGPATMDGIGPTQGWELYWMEVDVK 321 KAIVQYRRLLRQEIEKV GGEKPMLFLDEA+ARSIQGPATMDGIGPT+GWE YWMEVDVK Sbjct: 367 KAIVQYRRLLRQEIEKVGGGEKPMLFLDEANARSIQGPATMDGIGPTRGWETYWMEVDVK 426 Query: 322 RRRGAPWAAPVPREIAGKVHHLTAAE 347 RRRGAPW APVP+EI GKVH LTAAE Sbjct: 427 RRRGAPWTAPVPKEIDGKVHRLTAAE 452 >ref|YP_004107494.1| Rieske (2Fe-2S) iron-sulfur domain [Rhodopseudomonas palustris DX-1] gb|ADU42761.1| Rieske (2Fe-2S) iron-sulfur domain [Rhodopseudomonas palustris DX-1] Length = 452 Score = 615 bits (1585), Expect = e-174, Method: Compositional matrix adjust. Identities = 291/326 (89%), Positives = 303/326 (92%) Query: 22 KGGILWAYLGEGAPPAFPELDCFVAPGSHTFAFKGHMNCNWLQALEVGIDPAHASYLHRF 81 KGGILWAYLG G PPAFPE+DCFVAP SH FAFKG M CNWLQALEVGIDPAHAS+LHRF Sbjct: 127 KGGILWAYLGAGEPPAFPEIDCFVAPDSHVFAFKGLMECNWLQALEVGIDPAHASFLHRF 186 Query: 82 FEDEDTSAAYGKQFRGASAGSDMPMTKILREYDRPIINVEHTEYGLRLIALRELDAERTH 141 FEDEDTS AYGKQFRGASAGSD+PMTK+LREYDRPIINVEHTEYGLRLIALRE+D ERTH Sbjct: 187 FEDEDTSQAYGKQFRGASAGSDLPMTKVLREYDRPIINVEHTEYGLRLIALREIDDERTH 246 Query: 142 VRVTNQLFPHGFVIPMSTEMTITQWHVPVDDENCYWYAIFTSYAAPVDKQKMRDQRLELY 201 VRVTNQLFPHGFVIPMSTEMTITQWHVPVDD +CYWYAIFTSYAAPVDK KMRDQRLELY Sbjct: 247 VRVTNQLFPHGFVIPMSTEMTITQWHVPVDDTHCYWYAIFTSYAAPVDKVKMRDQRLELY 306 Query: 202 TLPDYKSRKNKSNDYGFDPHEQATETYTGMGTDINVHDQWAVESMGPIQDRTNEHLGQSD 261 LPDYKSRKNK+NDYGFDPHEQAT TYTGMG DINVHDQWAVESMG IQDRT EHLGQSD Sbjct: 307 ELPDYKSRKNKTNDYGFDPHEQATATYTGMGLDINVHDQWAVESMGAIQDRTREHLGQSD 366 Query: 262 KAIVQYRRLLRQEIEKVAGGEKPMLFLDEASARSIQGPATMDGIGPTQGWELYWMEVDVK 321 KAI+QYRRLLRQEIEK A G KP+L LDEASAR+IQGPATMDGIGP++GWE YWMEVDVK Sbjct: 367 KAIIQYRRLLRQEIEKAASGGKPLLALDEASARAIQGPATMDGIGPSRGWETYWMEVDVK 426 Query: 322 RRRGAPWAAPVPREIAGKVHHLTAAE 347 RRRGAPWAAPVP EIA KV HLTAAE Sbjct: 427 RRRGAPWAAPVPSEIAAKVPHLTAAE 452 >ref|YP_001990190.1| phthalate 4,5-dioxygenase [Rhodopseudomonas palustris TIE-1] gb|ACE99714.1| Phthalate 4,5-dioxygenase [Rhodopseudomonas palustris TIE-1] Length = 452 Score = 610 bits (1573), Expect = e-172, Method: Compositional matrix adjust. Identities = 287/326 (88%), Positives = 303/326 (92%) Query: 22 KGGILWAYLGEGAPPAFPELDCFVAPGSHTFAFKGHMNCNWLQALEVGIDPAHASYLHRF 81 KGGILWAYLG G PPAFPE+DCF+AP +H FAFKG M CNWLQALEVGIDPAHAS+LHRF Sbjct: 127 KGGILWAYLGAGEPPAFPEIDCFIAPDTHVFAFKGLMECNWLQALEVGIDPAHASFLHRF 186 Query: 82 FEDEDTSAAYGKQFRGASAGSDMPMTKILREYDRPIINVEHTEYGLRLIALRELDAERTH 141 FEDEDTS AYGKQFRGASAGSD+PMTK+LREYDRPIINVEHTEYGLRLIALRE+D ERTH Sbjct: 187 FEDEDTSQAYGKQFRGASAGSDLPMTKVLREYDRPIINVEHTEYGLRLIALREIDDERTH 246 Query: 142 VRVTNQLFPHGFVIPMSTEMTITQWHVPVDDENCYWYAIFTSYAAPVDKQKMRDQRLELY 201 VRVTNQLFPHGFVIPMSTEMTITQWHVPVDD +CYWYAIFTSYAAPVDK KMRDQRLELY Sbjct: 247 VRVTNQLFPHGFVIPMSTEMTITQWHVPVDDTHCYWYAIFTSYAAPVDKVKMRDQRLELY 306 Query: 202 TLPDYKSRKNKSNDYGFDPHEQATETYTGMGTDINVHDQWAVESMGPIQDRTNEHLGQSD 261 LPDYKSR+NK+NDYGFDPHEQAT TYTGMG DINVHDQWAVESMG IQDRT EHLGQSD Sbjct: 307 ELPDYKSRRNKTNDYGFDPHEQATATYTGMGLDINVHDQWAVESMGAIQDRTREHLGQSD 366 Query: 262 KAIVQYRRLLRQEIEKVAGGEKPMLFLDEASARSIQGPATMDGIGPTQGWELYWMEVDVK 321 KAI+QYRRLLRQEIEK A G KP+L LDEA+AR+IQGPATMDGIGP++GWE YWMEVDVK Sbjct: 367 KAIIQYRRLLRQEIEKAASGGKPLLALDEAAARAIQGPATMDGIGPSRGWETYWMEVDVK 426 Query: 322 RRRGAPWAAPVPREIAGKVHHLTAAE 347 RRRGAPWAAPVP EIA KV HLTAAE Sbjct: 427 RRRGAPWAAPVPSEIAAKVPHLTAAE 452 >ref|NP_946334.1| phthalate dioxygenase [Rhodopseudomonas palustris CGA009] emb|CAE26426.1| possible phthalate dioxygenase [Rhodopseudomonas palustris CGA009] Length = 452 Score = 607 bits (1566), Expect = e-172, Method: Compositional matrix adjust. Identities = 285/326 (87%), Positives = 302/326 (92%) Query: 22 KGGILWAYLGEGAPPAFPELDCFVAPGSHTFAFKGHMNCNWLQALEVGIDPAHASYLHRF 81 KGGILWAYLG G PPAFPE+DCF+AP +H FAFKG M CNWLQALEVGIDPAHAS+LHRF Sbjct: 127 KGGILWAYLGAGEPPAFPEIDCFIAPDTHVFAFKGLMECNWLQALEVGIDPAHASFLHRF 186 Query: 82 FEDEDTSAAYGKQFRGASAGSDMPMTKILREYDRPIINVEHTEYGLRLIALRELDAERTH 141 FEDEDTS AYGKQFRGASAGSD+PMTK+LREYDRPIINVEHTEYGLRLIALRE+D ERTH Sbjct: 187 FEDEDTSQAYGKQFRGASAGSDLPMTKVLREYDRPIINVEHTEYGLRLIALREIDDERTH 246 Query: 142 VRVTNQLFPHGFVIPMSTEMTITQWHVPVDDENCYWYAIFTSYAAPVDKQKMRDQRLELY 201 VRVTNQLFPHGFVIPMSTEMTITQWHVPVDD +CYWYAIFTSYAAPVDK KMRDQRLELY Sbjct: 247 VRVTNQLFPHGFVIPMSTEMTITQWHVPVDDTHCYWYAIFTSYAAPVDKVKMRDQRLELY 306 Query: 202 TLPDYKSRKNKSNDYGFDPHEQATETYTGMGTDINVHDQWAVESMGPIQDRTNEHLGQSD 261 LP+YKSR+NK+NDYGFDPHEQAT TYTGMG DINVHDQWAVESMG IQDRT EHLGQSD Sbjct: 307 ELPNYKSRRNKTNDYGFDPHEQATATYTGMGLDINVHDQWAVESMGAIQDRTREHLGQSD 366 Query: 262 KAIVQYRRLLRQEIEKVAGGEKPMLFLDEASARSIQGPATMDGIGPTQGWELYWMEVDVK 321 KAI+QYRRLLRQEIEK A G KP+L LDEA+AR+IQGPATMDGIGP++GWE YWMEVDVK Sbjct: 367 KAIIQYRRLLRQEIEKAASGGKPLLALDEAAARAIQGPATMDGIGPSRGWETYWMEVDVK 426 Query: 322 RRRGAPWAAPVPREIAGKVHHLTAAE 347 RRRGAPWA PVP EIA KV HLTAAE Sbjct: 427 RRRGAPWAVPVPSEIAAKVPHLTAAE 452 >ref|YP_485884.1| Rieske (2Fe-2S) protein [Rhodopseudomonas palustris HaA2] gb|ABD06973.1| Rieske (2Fe-2S) protein [Rhodopseudomonas palustris HaA2] Length = 452 Score = 601 bits (1549), Expect = e-170, Method: Compositional matrix adjust. Identities = 282/326 (86%), Positives = 296/326 (90%) Query: 22 KGGILWAYLGEGAPPAFPELDCFVAPGSHTFAFKGHMNCNWLQALEVGIDPAHASYLHRF 81 KGG+LW YLG G PPAFPE+DCFVAP SH FAFKG CNWLQALEVGIDPAHAS+LHRF Sbjct: 127 KGGMLWTYLGAGEPPAFPEIDCFVAPDSHVFAFKGLFECNWLQALEVGIDPAHASFLHRF 186 Query: 82 FEDEDTSAAYGKQFRGASAGSDMPMTKILREYDRPIINVEHTEYGLRLIALRELDAERTH 141 FEDEDTS +YGKQFRGASAGS++PMTK+LREYDRPIINVEHTEYGLRLIALRE+D ERTH Sbjct: 187 FEDEDTSQSYGKQFRGASAGSELPMTKVLREYDRPIINVEHTEYGLRLIALREIDDERTH 246 Query: 142 VRVTNQLFPHGFVIPMSTEMTITQWHVPVDDENCYWYAIFTSYAAPVDKQKMRDQRLELY 201 VRVTNQLFPHGFVIPMSTEMTITQWHVPVDD NCYWYAIFTSY PVDK KMRDQRLELY Sbjct: 247 VRVTNQLFPHGFVIPMSTEMTITQWHVPVDDNNCYWYAIFTSYTKPVDKVKMRDQRLELY 306 Query: 202 TLPDYKSRKNKSNDYGFDPHEQATETYTGMGTDINVHDQWAVESMGPIQDRTNEHLGQSD 261 LPDYKSR+NK+NDYGFDPHEQAT TYTGMG DINVHDQWAVESMGPIQDRT EHLGQSD Sbjct: 307 ELPDYKSRRNKTNDYGFDPHEQATATYTGMGADINVHDQWAVESMGPIQDRTREHLGQSD 366 Query: 262 KAIVQYRRLLRQEIEKVAGGEKPMLFLDEASARSIQGPATMDGIGPTQGWELYWMEVDVK 321 KAI+QYRRLLRQEI K G KP+L LD ASAR IQGPATMDGIGP++GWE YWMEVDVK Sbjct: 367 KAIIQYRRLLRQEIAKAEAGGKPLLALDAASARGIQGPATMDGIGPSRGWETYWMEVDVK 426 Query: 322 RRRGAPWAAPVPREIAGKVHHLTAAE 347 RRRGAPWAAPVP EIA KV HLTAAE Sbjct: 427 RRRGAPWAAPVPAEIAAKVPHLTAAE 452