BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0087.0010.p (261 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_767711.1| transcriptional regulator [Bradyrhizobium japon... 433 e-119 ref|YP_001990189.1| IclR family transcriptional regulator [Rhodo... 324 7e-87 ref|NP_946333.1| transcriptional regulator PcaR [Rhodopseudomona... 324 1e-86 ref|YP_004107493.1| IclR family transcriptional regulator [Rhodo... 323 2e-86 ref|ZP_08630887.1| transcriptional regulator, IclR family [Brady... 312 3e-83 >ref|NP_767711.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC46336.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 261 Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust. Identities = 216/261 (82%), Positives = 235/261 (90%) Query: 1 MPKLKRTDQDERATDFVEALDRGLRLLQVFGTVSGPATLSDLARAADLPRATARRILFTL 60 MPKLKR++ DERATDFVE+LDRGLRLLQ FGT GP TLSDLARAADLPRATARR+LFTL Sbjct: 1 MPKLKRSETDERATDFVESLDRGLRLLQCFGTTVGPMTLSDLARAADLPRATARRMLFTL 60 Query: 61 AHGGFVATDGKLFTLTPHVLTLAGSFLQSNQVVTVLQPVLDRIATAAQEIASLALLDGDD 120 GGFV DGKLFTLTPHVLTLA S+L+SNQ+V VLQPVLDR+ATAA EI+SLA+LDGDD Sbjct: 61 QRGGFVGGDGKLFTLTPHVLTLAASYLRSNQLVAVLQPVLDRVATAANEISSLAVLDGDD 120 Query: 121 VVFVARSSPTRVFSAGLDIGYRLPAFCTSVGRAMLGRLTDAELAARLKAMRRDPVTSQTV 180 VVFVARSSP R+FS GL+IGYRLPAFCTSVGRAMLG+L DAELA RLK M R+ +T QTV Sbjct: 121 VVFVARSSPARMFSGGLEIGYRLPAFCTSVGRAMLGQLDDAELAPRLKTMTREALTPQTV 180 Query: 181 TDPKKLLATIIADRAQGYSLVDREAEPHFRSISVPVHRYDGTIVAAINMGAHVDRVPAKE 240 TDPK LLA I ADRAQGYSLVDREAEPHFRSISVPV RYDG IVAA+NMGAHVDRVPA+E Sbjct: 181 TDPKALLARITADRAQGYSLVDREAEPHFRSISVPVRRYDGVIVAAVNMGAHVDRVPAQE 240 Query: 241 LIDRFLPLLREGAEDVKSRLL 261 LIDRFLPLLREGAE V+S+LL Sbjct: 241 LIDRFLPLLREGAEAVRSQLL 261 >ref|YP_001990189.1| IclR family transcriptional regulator [Rhodopseudomonas palustris TIE-1] gb|ACE99713.1| transcriptional regulator, IclR family [Rhodopseudomonas palustris TIE-1] Length = 263 Score = 324 bits (831), Expect = 7e-87, Method: Compositional matrix adjust. Identities = 156/263 (59%), Positives = 202/263 (76%), Gaps = 2/263 (0%) Query: 1 MPKLKRTDQD--ERATDFVEALDRGLRLLQVFGTVSGPATLSDLARAADLPRATARRILF 58 MPKLKRT D + +F+E+L RGLR+++ FG P TLSD+A+A LPRATARRIL Sbjct: 1 MPKLKRTADDGPSESAEFIESLSRGLRVIEAFGAEKRPMTLSDVAKACGLPRATARRILL 60 Query: 59 TLAHGGFVATDGKLFTLTPHVLTLAGSFLQSNQVVTVLQPVLDRIATAAQEIASLALLDG 118 TL G+V++D +LF LTP VL LA ++L SNQ+ VLQP++DR++ +A+E+ SLA+LDG Sbjct: 61 TLQSAGYVSSDDRLFALTPRVLGLASAYLASNQISAVLQPLMDRVSASAKEVCSLAILDG 120 Query: 119 DDVVFVARSSPTRVFSAGLDIGYRLPAFCTSVGRAMLGRLTDAELAARLKAMRRDPVTSQ 178 DD VFVAR+SP RVFSAG+D+GYRLP FCTSVGR +L RL + EL A + AM T Sbjct: 121 DDAVFVARASPARVFSAGIDLGYRLPLFCTSVGRVLLSRLDNNELTAAINAMTLTKQTED 180 Query: 179 TVTDPKKLLATIIADRAQGYSLVDREAEPHFRSISVPVHRYDGTIVAAINMGAHVDRVPA 238 T+TD + ++ATIIADR +GYSLVDREAEP FRS++VP+ RYDGTIVAA N+GAHVDR+ Sbjct: 181 TITDKQTVIATIIADRTKGYSLVDREAEPGFRSVAVPIRRYDGTIVAAANIGAHVDRITT 240 Query: 239 KELIDRFLPLLREGAEDVKSRLL 261 E+IDRFLPLL+ AE+ + ++ Sbjct: 241 GEMIDRFLPLLQTMAEEARPLMM 263 >ref|NP_946333.1| transcriptional regulator PcaR [Rhodopseudomonas palustris CGA009] emb|CAE26425.1| putativetranscriptional regulator PcaR, IclR family [Rhodopseudomonas palustris CGA009] Length = 263 Score = 324 bits (830), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 156/263 (59%), Positives = 202/263 (76%), Gaps = 2/263 (0%) Query: 1 MPKLKRTDQD--ERATDFVEALDRGLRLLQVFGTVSGPATLSDLARAADLPRATARRILF 58 MPKLKRT D + +F+E+L RGLR+++ FG P TLSD+A+A LPRATARRIL Sbjct: 1 MPKLKRTADDGPSESAEFIESLSRGLRVIEAFGAEKRPMTLSDVAKACGLPRATARRILL 60 Query: 59 TLAHGGFVATDGKLFTLTPHVLTLAGSFLQSNQVVTVLQPVLDRIATAAQEIASLALLDG 118 TL G+V++D +LF LTP VL LA ++L SNQ+ VLQP++DR++ +A+E+ SLA+LDG Sbjct: 61 TLQSAGYVSSDDRLFALTPRVLGLASAYLASNQISAVLQPLMDRVSASAKEVCSLAILDG 120 Query: 119 DDVVFVARSSPTRVFSAGLDIGYRLPAFCTSVGRAMLGRLTDAELAARLKAMRRDPVTSQ 178 DD VFVAR+SP RVFSAG+D+GYRLP FCTSVGR +L RL + EL A + AM T Sbjct: 121 DDAVFVARASPARVFSAGIDLGYRLPLFCTSVGRVLLSRLDNDELTATINAMTLTKQTED 180 Query: 179 TVTDPKKLLATIIADRAQGYSLVDREAEPHFRSISVPVHRYDGTIVAAINMGAHVDRVPA 238 T+TD + ++ATIIADR +GYSLVDREAEP FRS++VP+ RYDGTIVAA N+GAHVDR+ Sbjct: 181 TITDKQTVIATIIADRTKGYSLVDREAEPGFRSVAVPIRRYDGTIVAAANIGAHVDRITT 240 Query: 239 KELIDRFLPLLREGAEDVKSRLL 261 E+IDRFLPLL+ AE+ + ++ Sbjct: 241 GEMIDRFLPLLQTMAEEARPLMM 263 >ref|YP_004107493.1| IclR family transcriptional regulator [Rhodopseudomonas palustris DX-1] gb|ADU42760.1| transcriptional regulator, IclR family [Rhodopseudomonas palustris DX-1] Length = 264 Score = 323 bits (828), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 155/264 (58%), Positives = 203/264 (76%), Gaps = 3/264 (1%) Query: 1 MPKLKRTDQDERATD---FVEALDRGLRLLQVFGTVSGPATLSDLARAADLPRATARRIL 57 MPKLKR D+ T+ F+E+L RGLR+++ FG P TLSD+A+A DLPRATARR+L Sbjct: 1 MPKLKRPAADDAPTESAEFIESLSRGLRVIEAFGAEKRPMTLSDVAKACDLPRATARRVL 60 Query: 58 FTLAHGGFVATDGKLFTLTPHVLTLAGSFLQSNQVVTVLQPVLDRIATAAQEIASLALLD 117 TL G+V++D +LF LTP VL LA ++L SNQ+ VLQP++DR++ AA+E+ SLA+LD Sbjct: 61 LTLQSAGYVSSDDRLFALTPRVLGLASAYLASNQISAVLQPLMDRVSAAAKEVCSLAILD 120 Query: 118 GDDVVFVARSSPTRVFSAGLDIGYRLPAFCTSVGRAMLGRLTDAELAARLKAMRRDPVTS 177 GDD VFVAR+SP RVFSAG+D+GYRLP FCTSVGR +L RL ++EL A + M T Sbjct: 121 GDDAVFVARASPARVFSAGIDLGYRLPLFCTSVGRVLLSRLDNSELTATINGMTLTRQTE 180 Query: 178 QTVTDPKKLLATIIADRAQGYSLVDREAEPHFRSISVPVHRYDGTIVAAINMGAHVDRVP 237 +T+TD + ++ATIIADR +GYSLVDREAEP FRS++VP+ RYDG IVAA N+GAHVDR+ Sbjct: 181 ETITDKQTVIATIIADRTKGYSLVDREAEPGFRSVAVPIRRYDGAIVAAANIGAHVDRIT 240 Query: 238 AKELIDRFLPLLREGAEDVKSRLL 261 E+IDRFLPLL+ AE+ + ++ Sbjct: 241 TGEMIDRFLPLLQAMAEEARPLMM 264 >ref|ZP_08630887.1| transcriptional regulator, IclR family [Bradyrhizobiaceae bacterium SG-6C] gb|EGP06419.1| transcriptional regulator, IclR family [Bradyrhizobiaceae bacterium SG-6C] Length = 262 Score = 312 bits (800), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 155/246 (63%), Positives = 192/246 (78%) Query: 16 FVEALDRGLRLLQVFGTVSGPATLSDLARAADLPRATARRILFTLAHGGFVATDGKLFTL 75 F+E+LDRGLR+LQ FGT P TLSD+A+A++L RATARRIL TL GFVA D +LF+L Sbjct: 17 FIESLDRGLRVLQSFGTEHRPMTLSDIAKASNLSRATARRILLTLQRAGFVAGDERLFSL 76 Query: 76 TPHVLTLAGSFLQSNQVVTVLQPVLDRIATAAQEIASLALLDGDDVVFVARSSPTRVFSA 135 TP VL LA ++L SNQ+V V+QP++D I+T A+E+ SLA+LDG + VFVAR+SP RVFSA Sbjct: 77 TPRVLALASAYLSSNQIVAVMQPLMDDISTKAREVCSLAILDGHEAVFVARASPARVFSA 136 Query: 136 GLDIGYRLPAFCTSVGRAMLGRLTDAELAARLKAMRRDPVTSQTVTDPKKLLATIIADRA 195 G+DIGYRLPA+CTSVGR +LGRL + EL + + AM T +TVTD + ATIIADR Sbjct: 137 GIDIGYRLPAYCTSVGRVLLGRLPNDELTSAIDAMAVTAQTPETVTDKSIVTATIIADRN 196 Query: 196 QGYSLVDREAEPHFRSISVPVHRYDGTIVAAINMGAHVDRVPAKELIDRFLPLLREGAED 255 +GYSLVDREAEP FRSISVP+ RYDG +VAA N+GAHVDR+ E+IDRFLPLL + A Sbjct: 197 KGYSLVDREAEPGFRSISVPIRRYDGAVVAAANIGAHVDRITTGEMIDRFLPLLNDMAAT 256 Query: 256 VKSRLL 261 K L+ Sbjct: 257 AKPLLV 262