BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0087.0008.p (247 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_774384.1| glutamate synthase subunit beta [Bradyrhizobium... 369 e-100 ref|YP_001237509.1| glutamate synthase subunit beta [Bradyrhizob... 353 1e-95 ref|YP_001208097.1| glutamate synthase subunit beta [Bradyrhizob... 350 1e-94 ref|YP_576443.1| glutamate synthase subunit beta [Nitrobacter ha... 345 3e-93 ref|ZP_08627213.1| glutamate synthase (NADPH) small chain [Brady... 344 5e-93 >ref|NP_774384.1| glutamate synthase subunit beta [Bradyrhizobium japonicum USDA 110] dbj|BAC53009.1| glutamate synthase small subunit [Bradyrhizobium japonicum USDA 110] Length = 483 Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust. Identities = 178/211 (84%), Positives = 189/211 (89%) Query: 36 LQQQTRRVSGEPLNGAADILAGGKHVVVIGGGDTGSDCIGTSFRQGAKSVTQLEIMPAPP 95 L QQ RRVS EPLNG +ILAGGKHVVVIGGGDTGSDCIGTS RQGA SVTQLEIMPAPP Sbjct: 272 LPQQNRRVSEEPLNGVTEILAGGKHVVVIGGGDTGSDCIGTSLRQGALSVTQLEIMPAPP 331 Query: 96 EHENKGVTWPNWPLKMRTSSSQAEGAVREFAVLTTKFEGVDGKVTKLHCVKVDDKFKPLP 155 E ENKG+TWPNWPLKMRTSSSQAEGA+REFAVLT KF G +G+V KLHCV+VDDKFKP+ Sbjct: 332 ERENKGLTWPNWPLKMRTSSSQAEGAIREFAVLTQKFSGENGQVKKLHCVRVDDKFKPIA 391 Query: 156 GTEFTLDAELVLLAMGFVHPVHEGLLKTLGVELDQRGNVRASLQDYQTSRAKIFSAGDMR 215 GTEF LDAELVLLAMGFVHPVHEGLLK L VELD RGNV+A+ DYQTSR +F+AGDMR Sbjct: 392 GTEFELDAELVLLAMGFVHPVHEGLLKLLSVELDPRGNVKANTLDYQTSRPNVFTAGDMR 451 Query: 216 RGQSLVVWAIREGRQCARSIDTFLMGKTDLP 246 RGQSLVVWAIREGR CARSIDTFLMGKTDLP Sbjct: 452 RGQSLVVWAIREGRLCARSIDTFLMGKTDLP 482 >ref|YP_001237509.1| glutamate synthase subunit beta [Bradyrhizobium sp. BTAi1] gb|ABQ33603.1| glutamate synthase (NADH) small subunit [Bradyrhizobium sp. BTAi1] Length = 482 Score = 353 bits (906), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 171/211 (81%), Positives = 187/211 (88%), Gaps = 1/211 (0%) Query: 36 LQQQTRRVSGEPLNGAADILAGGKHVVVIGGGDTGSDCIGTSFRQGAKSVTQLEIMPAPP 95 L QQ RRV EP+N +ILAGGKHVVVIGGGDTGSDCIGTS RQGA SVTQLEIMPAPP Sbjct: 272 LPQQNRRVGNEPVN-TTEILAGGKHVVVIGGGDTGSDCIGTSLRQGALSVTQLEIMPAPP 330 Query: 96 EHENKGVTWPNWPLKMRTSSSQAEGAVREFAVLTTKFEGVDGKVTKLHCVKVDDKFKPLP 155 E ENK +TWPNWPLKMRTSSSQAEGAVREFAVLT KFEG +G V KLHCV+VD +FKP+P Sbjct: 331 ERENKALTWPNWPLKMRTSSSQAEGAVREFAVLTQKFEGENGVVKKLHCVRVDAQFKPIP 390 Query: 156 GTEFTLDAELVLLAMGFVHPVHEGLLKTLGVELDQRGNVRASLQDYQTSRAKIFSAGDMR 215 GTEF L A+LVLLAMGFVHPVHEGLLK+LGV+LD RGNV+A+L DYQTS K+FSAGDMR Sbjct: 391 GTEFVLAADLVLLAMGFVHPVHEGLLKSLGVDLDPRGNVKANLTDYQTSLPKVFSAGDMR 450 Query: 216 RGQSLVVWAIREGRQCARSIDTFLMGKTDLP 246 RGQSLVVWAIREGR CA+++D FLMGKTDLP Sbjct: 451 RGQSLVVWAIREGRLCAQAVDKFLMGKTDLP 481 >ref|YP_001208097.1| glutamate synthase subunit beta [Bradyrhizobium sp. ORS 278] emb|CAL79882.1| Glutamate synthase [NADPH] small chain, (NADPH-GOGAT) [Bradyrhizobium sp. ORS 278] Length = 482 Score = 350 bits (897), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 171/221 (77%), Positives = 190/221 (85%), Gaps = 3/221 (1%) Query: 28 VSRITYGQ--LQQQTRRVSGEPLNGAADILAGGKHVVVIGGGDTGSDCIGTSFRQGAKSV 85 +S I Y L QQ RRV EP+N A +ILAGGKHVVVIGGGDTGSDCIGTS RQGA SV Sbjct: 262 LSGIHYAMDFLPQQNRRVGNEPVN-ATEILAGGKHVVVIGGGDTGSDCIGTSLRQGALSV 320 Query: 86 TQLEIMPAPPEHENKGVTWPNWPLKMRTSSSQAEGAVREFAVLTTKFEGVDGKVTKLHCV 145 TQLEIMPAPPE ENK +TWPNWPLKMRTSSSQAEGA REFAVLT FEG +G V K+HCV Sbjct: 321 TQLEIMPAPPERENKALTWPNWPLKMRTSSSQAEGAAREFAVLTQTFEGENGAVKKMHCV 380 Query: 146 KVDDKFKPLPGTEFTLDAELVLLAMGFVHPVHEGLLKTLGVELDQRGNVRASLQDYQTSR 205 +VD +FKP+PGTEF L A+LVLLAMGFVHPVHEGLLK+LGV+LD RGNV+A+L DYQTS Sbjct: 381 RVDAQFKPIPGTEFELAADLVLLAMGFVHPVHEGLLKSLGVDLDPRGNVKANLSDYQTSL 440 Query: 206 AKIFSAGDMRRGQSLVVWAIREGRQCARSIDTFLMGKTDLP 246 K+FSAGDMRRGQSLVVWAIREGR CA+++D FLMGKT+LP Sbjct: 441 PKVFSAGDMRRGQSLVVWAIREGRLCAQAVDKFLMGKTELP 481 >ref|YP_576443.1| glutamate synthase subunit beta [Nitrobacter hamburgensis X14] gb|ABE61983.1| glutamate synthase (NADH) small subunit [Nitrobacter hamburgensis X14] Length = 484 Score = 345 bits (886), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 168/211 (79%), Positives = 184/211 (87%), Gaps = 1/211 (0%) Query: 36 LQQQTRRVSGEPLNGAADILAGGKHVVVIGGGDTGSDCIGTSFRQGAKSVTQLEIMPAPP 95 L QQ RRV E + GA DILA GKHVVVIGGGDTGSDCIGTS RQGA+SVTQLEIMP PP Sbjct: 274 LPQQNRRVGNEKV-GAPDILATGKHVVVIGGGDTGSDCIGTSLRQGARSVTQLEIMPPPP 332 Query: 96 EHENKGVTWPNWPLKMRTSSSQAEGAVREFAVLTTKFEGVDGKVTKLHCVKVDDKFKPLP 155 EHENK +TWPNWPLKMRTSSSQAEGA R++AVLT KF G DGKV KLHCV+VDDKF+ + Sbjct: 333 EHENKALTWPNWPLKMRTSSSQAEGARRDYAVLTQKFSGADGKVAKLHCVRVDDKFQSVA 392 Query: 156 GTEFTLDAELVLLAMGFVHPVHEGLLKTLGVELDQRGNVRASLQDYQTSRAKIFSAGDMR 215 G+EF LDA+LVLLAMGFVHPVHEGLLKTLG++LDQRGNVRA+ QDY+TS K+FSAGDMR Sbjct: 393 GSEFELDADLVLLAMGFVHPVHEGLLKTLGLDLDQRGNVRANTQDYRTSLPKVFSAGDMR 452 Query: 216 RGQSLVVWAIREGRQCARSIDTFLMGKTDLP 246 RGQSLVVWAIREGR CAR+ID LMG T LP Sbjct: 453 RGQSLVVWAIREGRLCARAIDQTLMGATTLP 483 >ref|ZP_08627213.1| glutamate synthase (NADPH) small chain [Bradyrhizobiaceae bacterium SG-6C] gb|EGP09839.1| glutamate synthase (NADPH) small chain [Bradyrhizobiaceae bacterium SG-6C] Length = 485 Score = 344 bits (883), Expect = 5e-93, Method: Compositional matrix adjust. Identities = 167/211 (79%), Positives = 181/211 (85%) Query: 36 LQQQTRRVSGEPLNGAADILAGGKHVVVIGGGDTGSDCIGTSFRQGAKSVTQLEIMPAPP 95 L QQ RRV EPL +ILAGGK VVVIGGGDTGSDCIGTS RQGAKSVTQLEIMPAPP Sbjct: 274 LPQQNRRVGNEPLGDVREILAGGKDVVVIGGGDTGSDCIGTSIRQGAKSVTQLEIMPAPP 333 Query: 96 EHENKGVTWPNWPLKMRTSSSQAEGAVREFAVLTTKFEGVDGKVTKLHCVKVDDKFKPLP 155 E ENK +TWPNWPLKMRTSSSQAEGA RE+AVLT KF G DGKVT LHCV+VD+K +P+P Sbjct: 334 ERENKALTWPNWPLKMRTSSSQAEGADREYAVLTQKFSGRDGKVTTLHCVRVDEKMQPIP 393 Query: 156 GTEFTLDAELVLLAMGFVHPVHEGLLKTLGVELDQRGNVRASLQDYQTSRAKIFSAGDMR 215 G+EF L A+LVLLAMGFVHPVHEG+LK LGVELD RGNVRAS +YQTS AK+FS+GDMR Sbjct: 394 GSEFELKADLVLLAMGFVHPVHEGMLKKLGVELDPRGNVRASTSNYQTSLAKVFSSGDMR 453 Query: 216 RGQSLVVWAIREGRQCARSIDTFLMGKTDLP 246 RGQSLVVWAIREGRQCA +ID LMG T LP Sbjct: 454 RGQSLVVWAIREGRQCAAAIDQHLMGATTLP 484