BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0087.0006.p (266 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001237501.1| hypothetical protein BBta_1361 [Bradyrhizobi... 283 2e-74 ref|YP_001208103.1| hypothetical protein BRADO6246 [Bradyrhizobi... 273 1e-71 ref|NP_774385.1| hypothetical protein bll7745 [Bradyrhizobium ja... 261 6e-68 ref|YP_578602.1| hypothetical protein Nham_3412 [Nitrobacter ham... 261 6e-68 ref|NP_946233.1| hypothetical protein RPA0880 [Rhodopseudomonas ... 259 2e-67 >ref|YP_001237501.1| hypothetical protein BBta_1361 [Bradyrhizobium sp. BTAi1] gb|ABQ33595.1| putative exported protein of unknown function [Bradyrhizobium sp. BTAi1] Length = 568 Score = 283 bits (725), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 147/260 (56%), Positives = 176/260 (67%), Gaps = 39/260 (15%) Query: 6 TGQLRLSIPPSETANKTPLPPAVAG----------------------------------- 30 TGQLR ++PPS +ANK P+P A+AG Sbjct: 139 TGQLRPTLPPSASANKPPIPAAMAGTVPGQPPRKRLKIDDDPFGAVGDYAGPFLVKGAVE 198 Query: 31 ----YDTNPGRLYSPQGRAFYMVAPEFLAVSDWERHAVVADLRGSFTGYGSGLTPNADGT 86 YD+NP RL +P+G +M+APEFLAVS+WERHA+VADLRGSFTGYGS L DG Sbjct: 199 LSAGYDSNPARLGNPRGMPAWMIAPEFLAVSNWERHALVADLRGSFTGYGSTLPARLDGG 258 Query: 87 PLSAPLDIDRPNFTGHIDGRLDVSRDTHLLGQARLLVSTDNPGSPNVQAGLARYPIYTTV 146 AP +DRP+FTGH+DGRLDVSRDT + Q RL +TDNPGSPNVQAGLARYP+ TT+ Sbjct: 259 VNPAPTTLDRPDFTGHLDGRLDVSRDTSVGAQLRLRAATDNPGSPNVQAGLARYPVATTL 318 Query: 147 GGTFGIDQNFNRMQVSLGGTVDRTDYQWSKLTDGTSSSNDDRNFTQYGGVGRVSYELNPA 206 G T GIDQ FNR+Q+S G T DRT YQ SKLTDG+++SNDDRNF QYGG+GRVSYE+ P Sbjct: 319 GTTIGIDQRFNRLQISTGATADRTSYQQSKLTDGSATSNDDRNFNQYGGIGRVSYEVMPG 378 Query: 207 VKPFVEVEGDSRFXLSRPQR 226 +KPF E++GDSR R R Sbjct: 379 LKPFAEIQGDSRVHDQRFDR 398 >ref|YP_001208103.1| hypothetical protein BRADO6246 [Bradyrhizobium sp. ORS 278] emb|CAL79888.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 278] Length = 568 Score = 273 bits (699), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 139/252 (55%), Positives = 172/252 (68%), Gaps = 39/252 (15%) Query: 6 TGQLRLSIPPSETANKTPLPPAVAG----------------------------------- 30 TGQLR ++PPS +AN+ P+P A+AG Sbjct: 139 TGQLRPTLPPSASANRQPVPAAMAGTVPGQPPRKRLKLDDDPFGAVGDYVGPFLIKGAVE 198 Query: 31 ----YDTNPGRLYSPQGRAFYMVAPEFLAVSDWERHAVVADLRGSFTGYGSGLTPNADGT 86 YD+NP RL + +G +M+APEFLAVS+WERHA+VADLRGSFTGYG L DG Sbjct: 199 LSAGYDSNPARLANARGMPAWMIAPEFLAVSNWERHALVADLRGSFTGYGGTLPALMDGG 258 Query: 87 PLSAPLDIDRPNFTGHIDGRLDVSRDTHLLGQARLLVSTDNPGSPNVQAGLARYPIYTTV 146 SAP +DRP+FTGH+DGRLD+SRDT + Q RL +TDNPGSP+VQAGLARYP+YTT+ Sbjct: 259 INSAPTTLDRPDFTGHVDGRLDISRDTSVGAQLRLRAATDNPGSPSVQAGLARYPVYTTL 318 Query: 147 GGTFGIDQNFNRMQVSLGGTVDRTDYQWSKLTDGTSSSNDDRNFTQYGGVGRVSYELNPA 206 G T G DQ FNR+Q+S G T DRT YQ SKLTDGT +SNDDRN+ Q+GG+GRVSYE+ P Sbjct: 319 GTTVGFDQRFNRLQISAGATADRTSYQESKLTDGTMTSNDDRNYNQFGGIGRVSYEVTPG 378 Query: 207 VKPFVEVEGDSR 218 +KPF EV+G++R Sbjct: 379 LKPFAEVQGNTR 390 >ref|NP_774385.1| hypothetical protein bll7745 [Bradyrhizobium japonicum USDA 110] dbj|BAC53010.1| bll7745 [Bradyrhizobium japonicum USDA 110] Length = 580 Score = 261 bits (668), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 134/257 (52%), Positives = 164/257 (63%), Gaps = 39/257 (15%) Query: 1 VPLNATGQLRLSIPPSETANKTPLPPAVAG------------------------------ 30 P G R++ PPSETA+K P+PPA+AG Sbjct: 146 TPDRTLGPPRIAPPPSETAHKVPVPPAMAGSVPGQPLRRRLKADDDAFGAVGDYAGSFLI 205 Query: 31 ---------YDTNPGRLYSPQGRAFYMVAPEFLAVSDWERHAVVADLRGSFTGYGSGLTP 81 YDTNP RL P G Y+VAP+ L SDWERHA+VADLRGSF+GY + + Sbjct: 206 KGGLELSAGYDTNPARLNKPVGSPVYVVAPDLLVASDWERHALVADLRGSFSGYTNNMPA 265 Query: 82 NADGTPLSAPLDIDRPNFTGHIDGRLDVSRDTHLLGQARLLVSTDNPGSPNVQAGLARYP 141 DG +P++IDRP+FTGH+DGR+DV RD L Q RL ++TDNPGSPNVQAGL +YP Sbjct: 266 TIDGFASPSPVEIDRPDFTGHVDGRIDVDRDLKLTSQLRLRLATDNPGSPNVQAGLQKYP 325 Query: 142 IYTTVGGTFGIDQNFNRMQVSLGGTVDRTDYQWSKLTDGTSSSNDDRNFTQYGGVGRVSY 201 +Y T G T G DQ FNR QV+ G TVDRT Y SKLTDG++ SN+DR+F QYGGVGR SY Sbjct: 326 VYATYGTTIGFDQTFNRFQVAAGATVDRTAYTDSKLTDGSTFSNNDRDFNQYGGVGRFSY 385 Query: 202 ELNPAVKPFVEVEGDSR 218 EL P +KPFVE++GD+R Sbjct: 386 ELKPGLKPFVEIQGDTR 402 >ref|YP_578602.1| hypothetical protein Nham_3412 [Nitrobacter hamburgensis X14] gb|ABE64142.1| conserved hypothetical protein [Nitrobacter hamburgensis X14] Length = 566 Score = 261 bits (668), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 126/201 (62%), Positives = 155/201 (77%), Gaps = 4/201 (1%) Query: 30 GYDTNPGRLYSPQGRAFYMVAPEFLAVSDWERHAVVADLRGSFTGYGSGLTPNAD--GTP 87 GYDTNPGR +P+G AFYMV+PEF+A SDWERHA++ DLRGSFTGYG P+ D G P Sbjct: 196 GYDTNPGRFRNPKGSAFYMVSPEFVAASDWERHALLVDLRGSFTGYGKTFPPDIDSAGQP 255 Query: 88 LSAPL--DIDRPNFTGHIDGRLDVSRDTHLLGQARLLVSTDNPGSPNVQAGLARYPIYTT 145 + +P+ ++DRP+FTG +DGRLDV+ DT + + RL + TDNPGSPN+QAGL RYP+Y T Sbjct: 256 IVSPVPTNVDRPDFTGRVDGRLDVTHDTRINSELRLRIGTDNPGSPNIQAGLERYPLYAT 315 Query: 146 VGGTFGIDQNFNRMQVSLGGTVDRTDYQWSKLTDGTSSSNDDRNFTQYGGVGRVSYELNP 205 GGT GI+ +FNR+Q+SL GT DRT YQ S+LTDGTS+SNDDR+F QYG V R SYEL P Sbjct: 316 TGGTAGIEHDFNRLQLSLNGTADRTTYQNSRLTDGTSTSNDDRDFNQYGAVARASYELLP 375 Query: 206 AVKPFVEVEGDSRFXLSRPQR 226 VKPF EVE D+R +R R Sbjct: 376 GVKPFGEVEADTRVHDTRFDR 396 >ref|NP_946233.1| hypothetical protein RPA0880 [Rhodopseudomonas palustris CGA009] emb|CAE26324.1| hypothetical protein RPA0880 [Rhodopseudomonas palustris CGA009] Length = 571 Score = 259 bits (663), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 130/212 (61%), Positives = 155/212 (73%), Gaps = 4/212 (1%) Query: 30 GYDTNPGRLYSPQGRAFYMVAPEFLAVSDWERHAVVADLRGSFTGYGSGLTPNADGTPLS 89 GYD+NP R + + FY VAPE + SDWERHA+VADLRG+FTGYG P A GT Sbjct: 206 GYDSNPARTNTARSSGFYKVAPELMITSDWERHALVADLRGAFTGYGHDFYPPA-GTVSP 264 Query: 90 APLDIDRPNFTGHIDGRLDVSRDTHLLGQARLLVSTDNPGSPNVQAGLARYPIYTTVGGT 149 AP+ +DRP F GHIDGRLD SRDTHL+GQ RL+V TDNPGSPN+QAGL +YP++TT G + Sbjct: 265 APISLDRPEFNGHIDGRLDASRDTHLIGQGRLIVGTDNPGSPNIQAGLTKYPLFTTTGFS 324 Query: 150 FGIDQNFNRMQVSLGGTVDRTDYQWSKLTDGTSSSNDDRNFTQYGGVGRVSYELNPAVKP 209 GIDQ+FNR+QV+ G DRT YQ S+LTDGTS N DRN+ QYGGVGRVSYEL P +KP Sbjct: 325 GGIDQSFNRLQVTAVGNFDRTVYQDSQLTDGTSYPNKDRNYNQYGGVGRVSYELKPGLKP 384 Query: 210 FVEVEGDSRFX---LSRPQRLRAQFVGRLRQG 238 FVE+EGD+R + R Q LR G + G Sbjct: 385 FVEIEGDTRVHDVPVDRYQYLRGSDGGYAKGG 416