BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0087.0003.p (179 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001208101.1| putative carboxymuconolactone decarboxylase ... 287 5e-76 ref|NP_774387.1| hypothetical protein bll7747 [Bradyrhizobium ja... 271 3e-71 ref|ZP_08628569.1| hypothetical protein CSIRO_1651 [Bradyrhizobi... 249 1e-64 ref|YP_003279156.1| carboxymuconolactone decarboxylase [Comamona... 198 3e-49 ref|YP_002948055.1| carboxymuconolactone decarboxylase [Variovor... 177 8e-43 >ref|YP_001208101.1| putative carboxymuconolactone decarboxylase family protein [Bradyrhizobium sp. ORS 278] emb|CAL79886.1| conserved hypothetical protein; putative Carboxymuconolactone decarboxylase family protein [Bradyrhizobium sp. ORS 278] Length = 184 Score = 287 bits (734), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 140/179 (78%), Positives = 150/179 (83%) Query: 1 MSRLAPLDPPYPADVQQHFDRIMRGKPPLMLFRVMAGHPRAWEKFRGGSLLDRGPLSLRA 60 M R++ L PPYP D+Q FD+IMRG PPLMLFRVMAGH RAW+KFRGGS+LDRGPLSLR Sbjct: 1 MPRISALQPPYPPDIQIQFDQIMRGAPPLMLFRVMAGHARAWDKFRGGSVLDRGPLSLRD 60 Query: 61 REIVIDRTCALNACEYEWGVHVTAFGAAAELTEQQVDATVRGPADAGCWSQAEQAMIAAV 120 REIVIDRTCALNACEYEWGVHV F AAA LT QQ DATV G ADA CWS EQA+IAAV Sbjct: 61 REIVIDRTCALNACEYEWGVHVATFAAAARLTPQQTDATVLGTADAPCWSGQEQALIAAV 120 Query: 121 DALHVRATLDDAEFAALSAHYDEDQILEIILLCGFYRTVSYLANALALPLEETAARFPK 179 DALH RATL +AEFA L A Y EDQ+LEIILLCGFYRTVSYLANAL LPLE AARFP+ Sbjct: 121 DALHARATLTEAEFAGLRACYAEDQVLEIILLCGFYRTVSYLANALGLPLERGAARFPR 179 >ref|NP_774387.1| hypothetical protein bll7747 [Bradyrhizobium japonicum USDA 110] dbj|BAC53012.1| bll7747 [Bradyrhizobium japonicum USDA 110] Length = 183 Score = 271 bits (694), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 131/176 (74%), Positives = 145/176 (82%) Query: 3 RLAPLDPPYPADVQQHFDRIMRGKPPLMLFRVMAGHPRAWEKFRGGSLLDRGPLSLRARE 62 R+APL PPYP ++Q FDRIMRG PPL+LFRVMAGH RAW+KFR G LLD GPLSLR RE Sbjct: 7 RIAPLAPPYPPEIQAQFDRIMRGAPPLVLFRVMAGHGRAWDKFRAGGLLDPGPLSLRQRE 66 Query: 63 IVIDRTCALNACEYEWGVHVTAFGAAAELTEQQVDATVRGPADAGCWSQAEQAMIAAVDA 122 IVIDRTCAL+ CEYEWGVHV F A LTE++V ATV G A + CWS EQA+IAAVDA Sbjct: 67 IVIDRTCALSKCEYEWGVHVAVFAGPARLTEEEVRATVEGDATSACWSLDEQALIAAVDA 126 Query: 123 LHVRATLDDAEFAALSAHYDEDQILEIILLCGFYRTVSYLANALALPLEETAARFP 178 LH R+T DAEFAAL+AHYDE QILEI+LLCGFYRTVSYLAN L LPLEE AA+FP Sbjct: 127 LHHRSTFTDAEFAALAAHYDEAQILEIMLLCGFYRTVSYLANGLRLPLEEKAAQFP 182 >ref|ZP_08628569.1| hypothetical protein CSIRO_1651 [Bradyrhizobiaceae bacterium SG-6C] gb|EGP08634.1| hypothetical protein CSIRO_1651 [Bradyrhizobiaceae bacterium SG-6C] Length = 181 Score = 249 bits (637), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 122/180 (67%), Positives = 143/180 (79%), Gaps = 1/180 (0%) Query: 1 MSRLAPLDPPYPADVQQHFDRIMR-GKPPLMLFRVMAGHPRAWEKFRGGSLLDRGPLSLR 59 MSR+ PL+ PY ++Q+ FD IM G PPL+LFR +A RA++KFR GSLLDRGPL+LR Sbjct: 1 MSRIVPLEAPYTPEIQEQFDAIMPPGVPPLVLFRTVATSKRAYKKFRNGSLLDRGPLTLR 60 Query: 60 AREIVIDRTCALNACEYEWGVHVTAFGAAAELTEQQVDATVRGPADAGCWSQAEQAMIAA 119 REIVIDRTCAL CEYEWGVH+T F AAA LT++QV ATV PADA CW++AEQ +IAA Sbjct: 61 EREIVIDRTCALTRCEYEWGVHITFFAAAARLTDEQVRATVLEPADAACWNEAEQVLIAA 120 Query: 120 VDALHVRATLDDAEFAALSAHYDEDQILEIILLCGFYRTVSYLANALALPLEETAARFPK 179 VDALH RATL AEF +L AHY +++ILEII LCGFYRTV+Y AN L LPLE AARFPK Sbjct: 121 VDALHHRATLCGAEFDSLKAHYSDEKILEIIQLCGFYRTVAYFANGLDLPLEPNAARFPK 180 >ref|YP_003279156.1| carboxymuconolactone decarboxylase [Comamonas testosteroni CNB-2] ref|ZP_07045165.1| Carboxymuconolactone decarboxylase [Comamonas testosteroni S44] gb|ACY33860.1| Carboxymuconolactone decarboxylase [Comamonas testosteroni CNB-2] gb|EFI61159.1| Carboxymuconolactone decarboxylase [Comamonas testosteroni S44] Length = 181 Score = 198 bits (504), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 95/177 (53%), Positives = 123/177 (69%) Query: 2 SRLAPLDPPYPADVQQHFDRIMRGKPPLMLFRVMAGHPRAWEKFRGGSLLDRGPLSLRAR 61 +R+AP PP+ +D+ + D+ M+G+PPL LF +A PR KF GSLLDRG L++R R Sbjct: 3 ARIAPAQPPFESDIAERIDKTMKGRPPLWLFATLARDPRLARKFFSGSLLDRGHLTIRQR 62 Query: 62 EIVIDRTCALNACEYEWGVHVTAFGAAAELTEQQVDATVRGPADAGCWSQAEQAMIAAVD 121 EIVIDRT AL EYEWGVHVT F AELT +QV +TV G A CWS E+ +I D Sbjct: 63 EIVIDRTTALCRSEYEWGVHVTGFAKLAELTHEQVRSTVLGSAADACWSDEEKLLIRVCD 122 Query: 122 ALHVRATLDDAEFAALSAHYDEDQILEIILLCGFYRTVSYLANALALPLEETAARFP 178 ALH +DD +A+LSA + E+ ++E+++L GFYRTVSYL NAL +PLE+ A RFP Sbjct: 123 ALHSHCDIDDQLWASLSATFPENALMELLMLAGFYRTVSYLTNALRMPLEDIAERFP 179 >ref|YP_002948055.1| carboxymuconolactone decarboxylase [Variovorax paradoxus S110] gb|ACS22789.1| carboxymuconolactone decarboxylase [Variovorax paradoxus S110] Length = 184 Score = 177 bits (448), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 85/177 (48%), Positives = 114/177 (64%) Query: 3 RLAPLDPPYPADVQQHFDRIMRGKPPLMLFRVMAGHPRAWEKFRGGSLLDRGPLSLRARE 62 R+AP +PP+PA +Q + +MRGKPPL+LF +A PR ++KF G LLDRG L+LR RE Sbjct: 4 RIAPAEPPFPAGIQSSLEGLMRGKPPLVLFTTLARDPRLFQKFFAGGLLDRGNLTLRQRE 63 Query: 63 IVIDRTCALNACEYEWGVHVTAFGAAAELTEQQVDATVRGPADAGCWSQAEQAMIAAVDA 122 +VI RT AL EYEWGVH+ F + A E QV + G CW ++ ++ D Sbjct: 64 LVITRTTALCKSEYEWGVHIALFASHAGFDEAQVLSLASGQPRDTCWQDEDRLLLELCDM 123 Query: 123 LHVRATLDDAEFAALSAHYDEDQILEIILLCGFYRTVSYLANALALPLEETAARFPK 179 LH T+DDA + +L + ++ ILE+++L GFYRTVSYLANAL LP E +A FP Sbjct: 124 LHSNCTVDDALWQSLKTAFSDEGILELLMLAGFYRTVSYLANALRLPAEPGSATFPS 180