BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0087.0002.p         (119 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001208100.1| MarR family transcriptional regulator [Brady...   156   9e-37
ref|NP_774388.1| transcriptional regulator [Bradyrhizobium japon...   143   7e-33
ref|ZP_08628568.1| transcriptional regulator, HxlR family [Brady...   143   1e-32
ref|YP_002432832.1| HxlR family transcriptional regulator [Desul...   117   6e-25
ref|YP_001413670.1| HxlR family transcriptional regulator [Parvi...   117   7e-25

>ref|YP_001208100.1| MarR family transcriptional regulator [Bradyrhizobium sp. ORS 278]
 emb|CAL79885.1| putative transcriptional regulatory protein, related to MarR family
           [Bradyrhizobium sp. ORS 278]
          Length = 108

 Score =  156 bits (395), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 74/97 (76%), Positives = 87/97 (89%)

Query: 12  VRGSRTGRPIMALLDLLGRRWTLRIIWELREGALTSRALRTACDEASPTILQTRLTELRE 71
           VRGSR+GRPIMALLDLLGRRW+LRI+WELRE  LTSRALR ACD+ASPT+LQ+RL ELR+
Sbjct: 10  VRGSRSGRPIMALLDLLGRRWSLRILWELRETELTSRALRAACDDASPTVLQSRLDELRK 69

Query: 72  AGFVELSEDGYGLTALGRELFQTFTPLHRFAERWSKR 108
           AGF++L EDGYGLT LGREL + F PL+RFA+RW K+
Sbjct: 70  AGFLQLGEDGYGLTPLGRELLENFLPLNRFADRWRKQ 106


>ref|NP_774388.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 dbj|BAC53013.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 108

 Score =  143 bits (361), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 81/108 (75%), Positives = 86/108 (79%), Gaps = 1/108 (0%)

Query: 1   MPKQGPVTRPAVRGSRTGRPIMALLDLLGRRWTLRIIWELREGALTSRALRTACDEASPT 60
           M KQ   T   VRGSRTGRPIMALLDLLGRRWTLRI+WELRE  LTSRALR ACDEASPT
Sbjct: 1   MAKQAGSTTRNVRGSRTGRPIMALLDLLGRRWTLRILWELREEPLTSRALRMACDEASPT 60

Query: 61  ILQTRLTELREAGFV-ELSEDGYGLTALGRELFQTFTPLHRFAERWSK 107
           +LQ RL +LREAGFV      GYGLT LGR+L +TF PLHRFAERW K
Sbjct: 61  VLQARLDDLREAGFVELGEGGGYGLTPLGRDLCETFMPLHRFAERWRK 108


>ref|ZP_08628568.1| transcriptional regulator, HxlR family [Bradyrhizobiaceae bacterium
           SG-6C]
 gb|EGP08633.1| transcriptional regulator, HxlR family [Bradyrhizobiaceae bacterium
           SG-6C]
          Length = 118

 Score =  143 bits (360), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 77/116 (66%), Positives = 89/116 (76%), Gaps = 3/116 (2%)

Query: 1   MPKQGPVTRP-AVRGSRTGRPIMALLDLLGRRWTLRIIWELR-EGALTSRALRTACDEAS 58
           M ++    RP AVRGS +GRPIMALLDLLGRRWTLRI+WE+R E ALTSR LR ACD+AS
Sbjct: 1   MARETRADRPKAVRGSVSGRPIMALLDLLGRRWTLRIVWEMRDERALTSRELRAACDDAS 60

Query: 59  PTILQTRLTELREAGFVELSE-DGYGLTALGRELFQTFTPLHRFAERWSKRGGSKT 113
           PT++Q RL ELREAGFVE  E  GY LT  G EL  TF PLHRFA++WS+  G K+
Sbjct: 61  PTVIQARLAELREAGFVERREAGGYRLTTQGNELLGTFMPLHRFADKWSRATGPKS 116


>ref|YP_002432832.1| HxlR family transcriptional regulator [Desulfatibacillum
           alkenivorans AK-01]
 gb|ACL05364.1| transcriptional regulator, HxlR family [Desulfatibacillum
           alkenivorans AK-01]
          Length = 115

 Score =  117 bits (293), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 63/108 (58%), Positives = 72/108 (66%)

Query: 1   MPKQGPVTRPAVRGSRTGRPIMALLDLLGRRWTLRIIWELREGALTSRALRTACDEASPT 60
           M K  P     VR S +GRPIMALLDLLGRRW LRIIWELREG L  R L+ A    SPT
Sbjct: 1   MAKSPPKPGKKVRSSESGRPIMALLDLLGRRWALRIIWELREGPLRFRGLQEASGGLSPT 60

Query: 61  ILQTRLTELREAGFVELSEDGYGLTALGRELFQTFTPLHRFAERWSKR 108
           +L  RL ELREA  VEL++ GY LT  G ELF    PL+ +AE+W+ R
Sbjct: 61  LLNQRLRELREADAVELTDKGYRLTKDGEELFVVLAPLNDWAEKWALR 108


>ref|YP_001413670.1| HxlR family transcriptional regulator [Parvibaculum lavamentivorans
           DS-1]
 gb|ABS64013.1| transcriptional regulator, HxlR family [Parvibaculum
           lavamentivorans DS-1]
          Length = 113

 Score =  117 bits (292), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 59/97 (60%), Positives = 70/97 (72%), Gaps = 1/97 (1%)

Query: 12  VRGSRTGRPIMALLDLLGRRWTLRIIWELREGALTSRALRTACDEASPTILQTRLTELRE 71
           VRGS TGRP+MALLDLLGRRW LRI+WELRE  L  R L+ AC   SP++L +R+ ELRE
Sbjct: 14  VRGSTTGRPVMALLDLLGRRWVLRIVWELREQPLNFRELQAACGGLSPSVLNSRMAELRE 73

Query: 72  AGFVELSED-GYGLTALGRELFQTFTPLHRFAERWSK 107
           A  VEL  D GY LT LGREL     PL  ++E+W+K
Sbjct: 74  ALIVELRPDEGYALTKLGRELLSQLAPLTSWSEKWAK 110