BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0086.0005.p         (93 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003881452.1| glucose-methanol-choline (GMC) oxidoreductas...   105   3e-21
ref|YP_002872959.1| putative oxidoreductase [Pseudomonas fluores...    94   5e-18
ref|YP_001206699.1| hypothetical protein BRADO4755 [Bradyrhizobi...    80   8e-14
ref|ZP_03632438.1| GMC oxidoreductase [bacterium Ellin514] >gi|2...    73   1e-11
ref|YP_003453212.1| FAD-dependent oxidoreductase [Azospirillum s...    72   2e-11

>ref|YP_003881452.1| glucose-methanol-choline (GMC) oxidoreductase:NAD binding site
           [Dickeya dadantii 3937]
 gb|ADM96895.1| Glucose-methanol-choline (GMC) oxidoreductase:NAD binding site
           [Dickeya dadantii 3937]
          Length = 531

 Score =  105 bits (261), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 47/91 (51%), Positives = 65/91 (71%)

Query: 1   MAQIKAEVQRIYSAMDAELTADATVSWRADHAASTCRMSDSPEHGVVDSNLRVHEMDNLF 60
           M +I++ V +++  + A L+   +VSWRADHAA   RMS     GVVD +L +H  DN++
Sbjct: 437 MMEIQSHVSQLFGQIGATLSGKPSVSWRADHAACVTRMSHDARQGVVDPHLCIHGTDNVY 496

Query: 61  VCSNAVFPNLGSINPTLTLTALSFRLAKHIN 91
           +CSNAVFP+ G+INPTLTL ALS RLA H++
Sbjct: 497 ICSNAVFPSTGAINPTLTLAALSLRLADHLH 527


>ref|YP_002872959.1| putative oxidoreductase [Pseudomonas fluorescens SBW25]
 emb|CAY49616.1| putative oxidoreductase [Pseudomonas fluorescens SBW25]
          Length = 543

 Score = 94.4 bits (233), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 48/90 (53%), Positives = 67/90 (74%)

Query: 1   MAQIKAEVQRIYSAMDAELTADATVSWRADHAASTCRMSDSPEHGVVDSNLRVHEMDNLF 60
           M QI A V  I+ +M A L    ++SWRADH+A TCRM+ + + GV+D +L+V  +DN++
Sbjct: 448 MQQISAHVGNIFESMGATLAGPPSISWRADHSACTCRMAGTEQEGVIDKDLKVFGVDNVY 507

Query: 61  VCSNAVFPNLGSINPTLTLTALSFRLAKHI 90
           +CSNA FPN G+INPTLTLTAL+ RL +H+
Sbjct: 508 ICSNAAFPNTGAINPTLTLTALALRLGEHL 537


>ref|YP_001206699.1| hypothetical protein BRADO4755 [Bradyrhizobium sp. ORS 278]
 emb|CAL78482.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 278]
          Length = 557

 Score = 80.5 bits (197), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 47/102 (46%), Positives = 64/102 (62%), Gaps = 12/102 (11%)

Query: 1   MAQIKA---EVQRIY--SAMDAELTADATVSWRADHAAS-------TCRMSDSPEHGVVD 48
           MA I A   E+QR+   + +   L  DAT++  A H  +       T RMSD P  GVV+
Sbjct: 448 MASIAASYRELQRVLDRTGVAKVLFDDATLNESASHPTAVGGHHIGTARMSDDPSQGVVN 507

Query: 49  SNLRVHEMDNLFVCSNAVFPNLGSINPTLTLTALSFRLAKHI 90
           SN R H++DNL++ S+AVFP  GS NPTLT+ AL+ RLA+H+
Sbjct: 508 SNCRAHDVDNLYIASSAVFPTGGSANPTLTIVALAIRLAEHM 549


>ref|ZP_03632438.1| GMC oxidoreductase [bacterium Ellin514]
 gb|EEF57262.1| GMC oxidoreductase [bacterium Ellin514]
          Length = 558

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/60 (55%), Positives = 40/60 (66%)

Query: 31  HAASTCRMSDSPEHGVVDSNLRVHEMDNLFVCSNAVFPNLGSINPTLTLTALSFRLAKHI 90
           H   T RMS  P+ GVVD N +VH +DNLFV   +VFP  G  NPTLT+ AL+ RLA H+
Sbjct: 493 HQIGTTRMSADPQQGVVDPNCQVHGVDNLFVAGCSVFPTSGHANPTLTMVALAVRLADHL 552


>ref|YP_003453212.1| FAD-dependent oxidoreductase [Azospirillum sp. B510]
 dbj|BAI76668.1| FAD-dependent oxidoreductase [Azospirillum sp. B510]
          Length = 551

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/73 (49%), Positives = 47/73 (64%), Gaps = 1/73 (1%)

Query: 18  ELTADATVSWRADHAASTCRMSDSPEHGVVDSNLRVHEMDNLFVCSNAVFPNLGSINPTL 77
           E  A A V W   H  +T RM DSP HGVVD + RVH M NL+V  ++VFP +G+ +PT+
Sbjct: 460 EEAAMADVGWCWHHMGTT-RMHDSPRHGVVDPDGRVHGMGNLYVAGSSVFPTMGADHPTM 518

Query: 78  TLTALSFRLAKHI 90
           T+ AL+ RL   I
Sbjct: 519 TIVALALRLTDRI 531