BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0086.0004.p (345 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003881451.1| hypothetical protein Dda3937_02291 [Dickeya ... 306 4e-81 ref|YP_002872960.1| hypothetical protein PFLU3392 [Pseudomonas f... 288 8e-76 ref|ZP_08196767.1| hypothetical protein NBCG_01893 [Nocardioidac... 216 3e-54 gb|EGE60202.1| hypothetical protein RHECNPAF_17000120 [Rhizobium... 214 1e-53 ref|YP_001985294.1| hypothetical protein RHECIAT_PC0000667 [Rhiz... 207 2e-51 >ref|YP_003881451.1| hypothetical protein Dda3937_02291 [Dickeya dadantii 3937] gb|ADM96894.1| hypothetical protein Dda3937_02291 [Dickeya dadantii 3937] Length = 360 Score = 306 bits (783), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 162/347 (46%), Positives = 219/347 (63%), Gaps = 6/347 (1%) Query: 4 TLAEKKALLERWLQTAIELELATIPPYLIALLSIKLPGNREAAELIRSVMIEEMLHLALV 63 +L +K L WL+TA+ LE TIPPY++AL+S+ NR A LIR+VMIEEMLH+ LV Sbjct: 9 SLETQKTELLDWLKTAMTLEFGTIPPYMMALVSLHPDKNRVPANLIRAVMIEEMLHMTLV 68 Query: 64 ANVLNAIGGKPRIDQDTIPRYPLTLTFEGKAFSDRQFPINLEAFSSAAIETFMKIEQPE- 122 N++N++GG+ + D++P YPL + F GK F DR+F +NL+AFS AIE FM IE P Sbjct: 69 GNLINSLGGRVDLGPDSLPSYPLAMEFRGKRFKDRKFDVNLQAFSPQAIEIFMMIELPSD 128 Query: 123 --QPRRFTTFWAQDLHVPALTIGEFYHRILDVLAELDRDHPGS-LFTGDPKRQLLKDYYW 179 + A +L + LTIG+FY IL L EL + S +F GD Q+ +DYYW Sbjct: 129 WAEREPLMLMAADELDIDGLTIGDFYLNILHQLEELCGKYGESAVFCGDLALQISQDYYW 188 Query: 180 SSGGEIIAVSDLASATAALNIVIAQGEGAWPKP-DGNAAAFTQEFDMGHYYRFSEIFYGS 238 SS G+ I +++L+SA A+N +I QGEG+ D + F Q ++ H+YRF EI++ Sbjct: 189 SSSGKPIVITNLSSAREAINTIIEQGEGSSTSIYDDDHRTFGQPIELAHFYRFREIYFAR 248 Query: 239 RYQRTDDPAGPPSGPKIVVDYAAVYPVKKNPDRKDYRDGSALNKLNDAFNLRYTDMLMQL 298 YQ D P PPSG VDY AVYP+K NP DY + L LN+ FN +YT ML+QL Sbjct: 249 YYQPGDKPHQPPSGEAFPVDYQAVYPIKTNPVAGDYAPDTPLAALNEQFNRQYTLMLLQL 308 Query: 299 HEALNGTPQALYTAIMNGMHGLTPVAHDMMKLPLDSDPKAV-GCPTF 344 +A +G P+ALYTAIMNGMHG+ P+A +M P+ D + G PTF Sbjct: 309 QQAFSGQPRALYTAIMNGMHGMVPIAVNMASQPIPGDAEQRHGTPTF 355 >ref|YP_002872960.1| hypothetical protein PFLU3392 [Pseudomonas fluorescens SBW25] emb|CAY49617.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25] Length = 354 Score = 288 bits (738), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 154/347 (44%), Positives = 212/347 (61%), Gaps = 4/347 (1%) Query: 3 DTLAEKKALLERWLQTAIELELATIPPYLIALLSIKLPGNREAAELIRSVMIEEMLHLAL 62 TL ++K L +WL TA+ LEL+TIP Y+ L+SIK NR A ++R VM+EEMLHL+L Sbjct: 2 STLEQEKQELSKWLHTAMTLELSTIPLYMTPLISIKPGKNRVPANILRGVMMEEMLHLSL 61 Query: 63 VANVLNAIGGKPRIDQDTIPRYPLTLTFEGKAFSDRQFPINLEAFSSAAIETFMKIEQPE 122 N+L+AIGG+ D +P +PL L F GK F DR+F NL FS A IETF +IE PE Sbjct: 62 AGNLLSAIGGRACFTADNVPSFPLALAFNGKRFKDREFEANLGPFSPANIETFTQIELPE 121 Query: 123 QPRRFTTFWA-QDLHVPALTIGEFYHRILDVLAELDRDH-PGSLFTGDPKRQLLKDYYWS 180 A Q + VP TIGEFY + + L L + + P ++F+G+ + QL DYYW Sbjct: 122 GWGEHPELAAVQQIDVPGYTIGEFYEALSNKLETLCKTYGPTAVFSGNVEHQLGLDYYWG 181 Query: 181 SGGEIIAVSDLASATAALNIVIAQGEGAWPKP-DGNAAAFTQEFDMGHYYRFSEIFYGSR 239 GG I ++DLASA A+ +++ QGEG+ D + F+Q ++ H++RF EI +G Sbjct: 182 GGGSPIVITDLASARRAIQVIVTQGEGSRHNVYDDDQQYFSQPNEVSHFFRFREIQFGRH 241 Query: 240 YQRTDDPAGPPSGPKIVVDYAAVYPVKKNPDRKDYRDGSALNKLNDAFNLRYTDMLMQLH 299 YQ D+P P+G VDY VYP+ NP DY A++ LN+ FN Y+ ML Q+ Sbjct: 242 YQAGDNPHQAPTGQAFEVDYNEVYPILSNPKSTDYALDPAMSALNEQFNRLYSLMLYQIA 301 Query: 300 EALNGTPQALYTAIMNGMHGLTPVAHDMMKLPLDSDPKAV-GCPTFE 345 EALNG A+YTAI+N MH +T A M+ P+ +DP+ G P+FE Sbjct: 302 EALNGAAGAMYTAILNSMHDMTATALTMVATPIANDPQGRNGAPSFE 348 >ref|ZP_08196767.1| hypothetical protein NBCG_01893 [Nocardioidaceae bacterium Broad-1] gb|EGD43766.1| hypothetical protein NBCG_01893 [Nocardioidaceae bacterium Broad-1] Length = 357 Score = 216 bits (551), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 138/347 (39%), Positives = 192/347 (55%), Gaps = 30/347 (8%) Query: 10 ALLERWLQTAIELELATIPPYLIALLSIKLPGNREAAELIRSVMIEEMLHLALVANVLNA 69 A L LQ AIELE AT+PPYL AL S+ N +A +++ SVM+EEMLHL L AN+LNA Sbjct: 22 ASLREHLQWAIELEHATLPPYLCALYSLDPRRNVDAYDVVVSVMMEEMLHLTLAANLLNA 81 Query: 70 IGGKPRIDQ-DTIPRYPLTLTFEGKAFSDRQFPINLEAFSSAAIETFMKIEQPEQPRRFT 128 +GG P +D +P YP L DR F ++L F A+E F++IE+P P Sbjct: 82 VGGSPVVDAPHMLPGYPAPLPH-----GDRSFEVSLLPFGKEALELFLRIEEPSAPEAPA 136 Query: 129 TFWAQDLHVPALTIGEFYHRI----LDVLAELDRDHPGSLFTGDPKRQLLKDYYWSSGGE 184 A + TIG+FY I D+ AEL D ++F+GDP RQ+ D + GE Sbjct: 137 ESDAYE------TIGQFYAAIEMGLRDLCAELGED---AVFSGDPARQVTSDAVYRGSGE 187 Query: 185 IIAVSDLASATAALNIVIAQGEGA-----WPKPDGNAAAFTQEF-DMGHYYRFSEIFYGS 238 IIAV+DL++A AL ++ QGEG+ W DG+ + ++ HYYRF E+ G Sbjct: 188 IIAVTDLSTALKALAEIVEQGEGSAHRDVW---DGDHEMSHPDLPEVAHYYRFRELLSGR 244 Query: 239 RYQRTDDPAGPPSGPKIVVDYAAVYPVKKNPDRKDYRDGSALNKLNDAFNLRYTDMLMQL 298 R+Q D P P+G + V++ +YP++ NP D G+ + + + FN Y D+L QL Sbjct: 245 RFQPGDTPQTGPTGAPVSVEWDEIYPMRPNPRIADNEPGNPVREAQEKFNSAYCDLLQQL 304 Query: 299 HEALNGTPQALYTAIMNGMHGLTPVAHDMMKLPLDSDPKAVGCPTFE 345 A NG PQ L A M+GL A +++ PL S + G PTFE Sbjct: 305 ERAFNGDPQ-LLGAATAAMYGLKAQAIALLQTPLPSGTETAG-PTFE 349 >gb|EGE60202.1| hypothetical protein RHECNPAF_17000120 [Rhizobium etli CNPAF512] Length = 374 Score = 214 bits (546), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 137/357 (38%), Positives = 198/357 (55%), Gaps = 37/357 (10%) Query: 12 LERWLQTAIELELATIPPYLIALLSIKLPGNREAAELIRSVMIEEMLHLALVANVLNAIG 71 L+ +L A++LE ATIPPYL AL SIK N++A +++R +++EEMLHL + AN+LNAIG Sbjct: 14 LKEFLYRAMQLEHATIPPYLTALYSIKPGVNQDATQVLRVIVVEEMLHLTIAANILNAIG 73 Query: 72 GKPRIDQ-DTIPRYPLTLTFEGKAFSDRQFPINLEAFSSAAIETFMKIEQPEQ------- 123 GKP + + D + YP L + F + ++AF A+ TF+KIE+P Q Sbjct: 74 GKPDLVRPDFVASYPAAL-----PDGETDFKVGIQAFGHEALATFLKIERPAQRPEHLVG 128 Query: 124 --------PRRFTTFWA----QDLHVPALTIGEFYHRILDVLAELDRDHPG---SLFTGD 168 P T + +DLH +IGEFY I + + L+ + G ++FTGD Sbjct: 129 KGLMHRKTPAGITALASHPRHEDLHF--YSIGEFYSAIAEGIKYLEAEAHGAGTTIFTGD 186 Query: 169 PKRQLLKDYYWSSGGEIIAVSDLASATAALNIVIAQGEGAWPKPDGNAAAFTQEFDMGHY 228 RQ+ +YY+S GGE+ AV+DL SA AL ++I QGEG + ++ HY Sbjct: 187 RSRQITSEYYYSGGGELFAVTDLKSAQEALELIIEQGEGDG-----GGIYDDDDHELAHY 241 Query: 229 YRFSEIFYGSRYQRTDDPAGPPSGPKIVVDYAAVYPVKKNPDRKDYRDGSALNKLNDAFN 288 YRF E+ G YQ+ D P G P+GP + VD+ YPVK+N KD +GS L++ AFN Sbjct: 242 YRFEELVKGRYYQKGDQP-GQPTGPHLQVDWEGAYPVKQNLKLKDILEGSELHEAAIAFN 300 Query: 289 LRYTDMLMQLHEALNGTPQALYTAIMNGMHGLTPVAHDMMKLPLDSDPKAVGCPTFE 345 +RY + L L A NG P L A+ M + ++++ PL P G PT+E Sbjct: 301 MRYGEFLQLLTRAYNGQPNLLLEAVPM-MFEFRNMILELIRNPLPGHPGKNGSPTYE 356 >ref|YP_001985294.1| hypothetical protein RHECIAT_PC0000667 [Rhizobium etli CIAT 652] gb|ACE94744.1| hypothetical conserved protein [Rhizobium etli CIAT 652] Length = 372 Score = 207 bits (527), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 134/357 (37%), Positives = 194/357 (54%), Gaps = 37/357 (10%) Query: 12 LERWLQTAIELELATIPPYLIALLSIKLPGNREAAELIRSVMIEEMLHLALVANVLNAIG 71 L+ +L A++LE ATIPPYL AL SIK N++A +++R +++EEMLHL + AN+LNAIG Sbjct: 12 LKEFLYRAMQLEHATIPPYLTALYSIKPGVNQDATQVLRVIVVEEMLHLTIAANILNAIG 71 Query: 72 GKPRIDQ-DTIPRYPLTLTFEGKAFSDRQFPINLEAFSSAAIETFMKIEQPEQ------- 123 GKP + + D + YP L + F + ++AF A+ TF+KIE+P Q Sbjct: 72 GKPDLVRPDFVASYPAAL-----PDGETDFKVGIQAFGREALATFLKIERPAQRPEHLVG 126 Query: 124 --------PRRFTTFWA----QDLHVPALTIGEFYHRILDVLAELD---RDHPGSLFTGD 168 P T + +DLH +IGEFY I + + L+ + ++FTGD Sbjct: 127 KGLMYRKTPAGITALASHPRHEDLHF--YSIGEFYSAIAEGIKYLEAEAHEAGTTIFTGD 184 Query: 169 PKRQLLKDYYWSSGGEIIAVSDLASATAALNIVIAQGEGAWPKPDGNAAAFTQEFDMGHY 228 RQ+ +YY+S GGE+ V+DL SA A+ ++I QGEG + ++ HY Sbjct: 185 RSRQITSEYYYSGGGELFPVTDLKSAQEAIELIIEQGEGDG-----GGIYDDDDHELAHY 239 Query: 229 YRFSEIFYGSRYQRTDDPAGPPSGPKIVVDYAAVYPVKKNPDRKDYRDGSALNKLNDAFN 288 YRF E+ G YQ+ D P G P+GP + VD+ YPVK+N KD +GS L + AFN Sbjct: 240 YRFEELVKGRYYQKGDQP-GQPTGPHLQVDWEGAYPVKQNLKVKDILEGSELREAAIAFN 298 Query: 289 LRYTDMLMQLHEALNGTPQALYTAIMNGMHGLTPVAHDMMKLPLDSDPKAVGCPTFE 345 RY + L L A NG P L A+ M + ++++ PL P G PT+E Sbjct: 299 TRYGEFLQLLTRAYNGQPNLLLEAVPM-MFEFRNMILELIRNPLPGHPGKNGSPTYE 354