BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0085.0027.p         (99 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_774646.1| hypothetical protein blr8006 [Bradyrhizobium ja...   164   4e-39
ref|YP_001239430.1| hypothetical protein BBta_3430 [Bradyrhizobi...   142   1e-32
ref|NP_768227.1| hypothetical protein bll1587 [Bradyrhizobium ja...   142   2e-32
ref|YP_001239325.1| hypothetical protein BBta_3318 [Bradyrhizobi...   135   2e-30
ref|YP_001992780.1| hypothetical protein Rpal_3806 [Rhodopseudom...   129   2e-28

>ref|NP_774646.1| hypothetical protein blr8006 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC53271.1| blr8006 [Bradyrhizobium japonicum USDA 110]
          Length = 133

 Score =  164 bits (415), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 76/99 (76%), Positives = 84/99 (84%)

Query: 1   LAPDDDLPQEYWQALLDDPRAEARSAPSGAALRLSQIPQHVLRVGCRRCARVVEIQKADA 60
           LAPD DLP EYWQALLDDPRAE RSA SG  LRLSQ  QH+LRV CRRC R VEIQK DA
Sbjct: 33  LAPDADLPAEYWQALLDDPRAEVRSAASGGTLRLSQFRQHILRVTCRRCGRTVEIQKVDA 92

Query: 61  ARLYGPDALWKDVGQRLLDNTCTQRTGRHEEDGCWPAFE 99
            RLYG DA+W+DVGQRLLDN C+QRTGRH+EDGCWP+++
Sbjct: 93  VRLYGRDAVWRDVGQRLLDNMCSQRTGRHDEDGCWPSYD 131


>ref|YP_001239430.1| hypothetical protein BBta_3430 [Bradyrhizobium sp. BTAi1]
 gb|ABQ35524.1| hypothetical protein BBta_3430 [Bradyrhizobium sp. BTAi1]
          Length = 134

 Score =  142 bits (359), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 69/102 (67%), Positives = 84/102 (82%), Gaps = 3/102 (2%)

Query: 1   LAPDDDLPQEYWQALLDDPRAEARSAPSGAA---LRLSQIPQHVLRVGCRRCARVVEIQK 57
           LAP+ DLP EYW+ALL+   A+       A+   LRLSQ+P HVLRVGCRRC R VEIQK
Sbjct: 33  LAPNADLPPEYWEALLEAAGADGDHVGLDASRRLLRLSQVPDHVLRVGCRRCGRTVEIQK 92

Query: 58  ADAARLYGPDALWKDVGQRLLDNTCTQRTGRHEEDGCWPAFE 99
           ADAARLYGP+++W+DVG+RLLD+TCTQRTGR+EEDGCWP+F+
Sbjct: 93  ADAARLYGPESVWRDVGRRLLDDTCTQRTGRYEEDGCWPSFD 134


>ref|NP_768227.1| hypothetical protein bll1587 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC46852.1| bll1587 [Bradyrhizobium japonicum USDA 110]
          Length = 181

 Score =  142 bits (357), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 69/99 (69%), Positives = 75/99 (75%), Gaps = 1/99 (1%)

Query: 1   LAPDDDLPQEYWQALLDDPRAEAR-SAPSGAALRLSQIPQHVLRVGCRRCARVVEIQKAD 59
           L P DD+P EYW ALLDD   +A  S  S    RL ++PQHVLRV CRRC R+VEIQKAD
Sbjct: 80  LGPKDDMPDEYWHALLDDADDQAAVSGRSSPGQRLCEMPQHVLRVSCRRCERIVEIQKAD 139

Query: 60  AARLYGPDALWKDVGQRLLDNTCTQRTGRHEEDGCWPAF 98
           AARLYG  A WK+VG RLLDNTC  RTGRHEEDGCWPAF
Sbjct: 140 AARLYGQQASWKEVGHRLLDNTCQNRTGRHEEDGCWPAF 178


>ref|YP_001239325.1| hypothetical protein BBta_3318 [Bradyrhizobium sp. BTAi1]
 gb|ABQ35419.1| hypothetical protein BBta_3318 [Bradyrhizobium sp. BTAi1]
          Length = 137

 Score =  135 bits (340), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 68/102 (66%), Positives = 80/102 (78%), Gaps = 3/102 (2%)

Query: 1   LAPDDDLPQEYWQALLDDPRAEAR-SAPSGA--ALRLSQIPQHVLRVGCRRCARVVEIQK 57
           LAP+D LP+EYWQA L+   A  R  +P G+   LRL +I  HVLRVGCRRC R VEIQK
Sbjct: 36  LAPNDCLPEEYWQAPLEAANAAERLPSPRGSLSQLRLGEIADHVLRVGCRRCGRTVEIQK 95

Query: 58  ADAARLYGPDALWKDVGQRLLDNTCTQRTGRHEEDGCWPAFE 99
            DA RLYG +A W+DVGQRLLD+TCTQRTGR+EEDGCWP+F+
Sbjct: 96  DDAVRLYGSEATWRDVGQRLLDDTCTQRTGRYEEDGCWPSFD 137


>ref|YP_001992780.1| hypothetical protein Rpal_3806 [Rhodopseudomonas palustris TIE-1]
 gb|ACF02305.1| conserved hypothetical protein [Rhodopseudomonas palustris TIE-1]
          Length = 125

 Score =  129 bits (323), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 63/100 (63%), Positives = 73/100 (73%), Gaps = 3/100 (3%)

Query: 2   APDDDLPQEYWQALL---DDPRAEARSAPSGAALRLSQIPQHVLRVGCRRCARVVEIQKA 58
           +P D LP EYWQALL   +  R    S  S  A  LS+I   +L+VGCRRC RVVEI++ 
Sbjct: 25  SPADALPPEYWQALLRAAEADRGRLTSGGSAGAAVLSRISHPLLQVGCRRCGRVVEIERV 84

Query: 59  DAARLYGPDALWKDVGQRLLDNTCTQRTGRHEEDGCWPAF 98
           DA RLYGP+A WK+VG+RLLD TCTQRTGRHEEDGCWP F
Sbjct: 85  DAIRLYGPEATWKEVGRRLLDKTCTQRTGRHEEDGCWPTF 124