BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0085.0023.p (391 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_767501.1| DNA polymerase IV [Bradyrhizobium japonicum USD... 468 e-130 ref|YP_001239276.1| DNA polymerase IV [Bradyrhizobium sp. BTAi1]... 436 e-120 ref|YP_001203592.1| DNA polymerase IV [Bradyrhizobium sp. ORS 27... 423 e-116 ref|YP_570760.1| DNA polymerase IV [Rhodopseudomonas palustris B... 416 e-114 ref|ZP_08073082.1| DNA-directed DNA polymerase [Methylocystis sp... 381 e-103 >ref|NP_767501.1| DNA polymerase IV [Bradyrhizobium japonicum USDA 110] dbj|BAC46126.1| DNA-damage-inducible protein [Bradyrhizobium japonicum USDA 110] Length = 366 Score = 468 bits (1205), Expect = e-130, Method: Compositional matrix adjust. Identities = 226/238 (94%), Positives = 232/238 (97%) Query: 12 NAPHRKIIHIDMDAFYASVEQRDNPDLRGKPVAVGGSAERGVVAXASYEARKFGVRSAMP 71 +P RKIIHIDMDAFYASVEQRDNP+LRGKPVAVGGSAERGVVA ASYEARKFGVRSAMP Sbjct: 11 TSPVRKIIHIDMDAFYASVEQRDNPELRGKPVAVGGSAERGVVAAASYEARKFGVRSAMP 70 Query: 72 SVTAKRQCPDLIFVRPRFEVYKAISRQIREIFAEHTTIIEPLSLDEAYLDVTENLQGIPL 131 SVTAKRQCPDLIFVRPRFEVYKAISRQIREIFAEHT IIEPLSLDEAYLDVTENLQGIPL Sbjct: 71 SVTAKRQCPDLIFVRPRFEVYKAISRQIREIFAEHTPIIEPLSLDEAYLDVTENLQGIPL 130 Query: 132 ARDIALRIRERIKAETGLNASAGISYNKFLAKLASDHRKPNGQFVISPEMGPAFVETLPV 191 ARD+ALRIRE+IKAETGLNASAGISYNKFLAKLASDHRKPNGQFVISPEMGPAFVE LPV Sbjct: 131 ARDVALRIREKIKAETGLNASAGISYNKFLAKLASDHRKPNGQFVISPEMGPAFVEALPV 190 Query: 192 GKFHGIGPATSAKMNALGIFTGLDMRNQTLQFMNANFGKSGAYYYWISRGVDERPVRA 249 GKFHGIGPATSAKMNALGIFTG DMRNQTL+FMNANFGK+GAYYYWISRGVDERPVRA Sbjct: 191 GKFHGIGPATSAKMNALGIFTGRDMRNQTLEFMNANFGKAGAYYYWISRGVDERPVRA 248 >ref|YP_001239276.1| DNA polymerase IV [Bradyrhizobium sp. BTAi1] gb|ABQ35370.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein P [Bradyrhizobium sp. BTAi1] Length = 354 Score = 436 bits (1121), Expect = e-120, Method: Compositional matrix adjust. Identities = 209/234 (89%), Positives = 221/234 (94%) Query: 16 RKIIHIDMDAFYASVEQRDNPDLRGKPVAVGGSAERGVVAXASYEARKFGVRSAMPSVTA 75 RKIIHIDMDAFYASVEQRDNP+LRGKPVAVGGS ERGVVA ASYEARKFGVRSAMPSVTA Sbjct: 3 RKIIHIDMDAFYASVEQRDNPELRGKPVAVGGSRERGVVAAASYEARKFGVRSAMPSVTA 62 Query: 76 KRQCPDLIFVRPRFEVYKAISRQIREIFAEHTTIIEPLSLDEAYLDVTENLQGIPLARDI 135 KRQCPDLIFV+PRFEVYKAIS Q+R IFAEHT +IEPLSLDEAYLDVTENLQGIPLARDI Sbjct: 63 KRQCPDLIFVKPRFEVYKAISLQVRAIFAEHTPLIEPLSLDEAYLDVTENLQGIPLARDI 122 Query: 136 ALRIRERIKAETGLNASAGISYNKFLAKLASDHRKPNGQFVISPEMGPAFVETLPVGKFH 195 ALRIRE IK ETGLNASAGISYNKFLAKLASDHRKPNGQ+VISPEMGPAFVETLPVGKFH Sbjct: 123 ALRIRETIKTETGLNASAGISYNKFLAKLASDHRKPNGQYVISPEMGPAFVETLPVGKFH 182 Query: 196 GIGPATSAKMNALGIFTGLDMRNQTLQFMNANFGKSGAYYYWISRGVDERPVRA 249 GIGPAT+AK+ ALGI TGLD+R Q+L F+ +FGKSGAYYYWISRG+DERPVRA Sbjct: 183 GIGPATAAKLTALGIRTGLDIRRQSLAFLQQHFGKSGAYYYWISRGIDERPVRA 236 >ref|YP_001203592.1| DNA polymerase IV [Bradyrhizobium sp. ORS 278] emb|CAL75355.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein P [Bradyrhizobium sp. ORS 278] Length = 368 Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust. Identities = 203/234 (86%), Positives = 219/234 (93%) Query: 16 RKIIHIDMDAFYASVEQRDNPDLRGKPVAVGGSAERGVVAXASYEARKFGVRSAMPSVTA 75 RKIIHIDMDAFYASVEQRDNP+LRG+PVAVGGS ERGVVA ASYEARKFGVRSAMPS+TA Sbjct: 16 RKIIHIDMDAFYASVEQRDNPELRGRPVAVGGSRERGVVAAASYEARKFGVRSAMPSMTA 75 Query: 76 KRQCPDLIFVRPRFEVYKAISRQIREIFAEHTTIIEPLSLDEAYLDVTENLQGIPLARDI 135 KR CPDLIFV+PRFEVYKAIS+QIR IFAEHT IIEPLSLDEAYLDVT+NLQGIPLARDI Sbjct: 76 KRLCPDLIFVKPRFEVYKAISQQIRAIFAEHTPIIEPLSLDEAYLDVTDNLQGIPLARDI 135 Query: 136 ALRIRERIKAETGLNASAGISYNKFLAKLASDHRKPNGQFVISPEMGPAFVETLPVGKFH 195 AL+IR RIKAETGLNASAGISYNKFLAKLASDHRKPNGQ+VISPE G AFVE LPVG+FH Sbjct: 136 ALQIRARIKAETGLNASAGISYNKFLAKLASDHRKPNGQYVISPETGAAFVEGLPVGRFH 195 Query: 196 GIGPATSAKMNALGIFTGLDMRNQTLQFMNANFGKSGAYYYWISRGVDERPVRA 249 GIGPAT+AK NALGI TGLD+RNQTL F+ +FGK+G+YYYWISRG+D RPVRA Sbjct: 196 GIGPATAAKFNALGIHTGLDIRNQTLPFLQQHFGKAGSYYYWISRGIDHRPVRA 249 >ref|YP_570760.1| DNA polymerase IV [Rhodopseudomonas palustris BisB5] gb|ABE40859.1| DNA-directed DNA polymerase [Rhodopseudomonas palustris BisB5] Length = 396 Score = 416 bits (1068), Expect = e-114, Method: Compositional matrix adjust. Identities = 199/235 (84%), Positives = 217/235 (92%) Query: 15 HRKIIHIDMDAFYASVEQRDNPDLRGKPVAVGGSAERGVVAXASYEARKFGVRSAMPSVT 74 RKIIH+DMDAFYASVEQRDNP+L G+PVAVGGS ERGVVA ASYEARKFGVRSAMPSVT Sbjct: 43 QRKIIHVDMDAFYASVEQRDNPELWGRPVAVGGSRERGVVAAASYEARKFGVRSAMPSVT 102 Query: 75 AKRQCPDLIFVRPRFEVYKAISRQIREIFAEHTTIIEPLSLDEAYLDVTENLQGIPLARD 134 A+RQCP L+FV+PRFEVYKAIS+QIREIFAEHT +IEPLSLDEAYL VTENLQGI LARD Sbjct: 103 ARRQCPGLVFVKPRFEVYKAISQQIREIFAEHTLVIEPLSLDEAYLYVTENLQGISLARD 162 Query: 135 IALRIRERIKAETGLNASAGISYNKFLAKLASDHRKPNGQFVISPEMGPAFVETLPVGKF 194 IAL IR RIK ETGLNASAGISYNKFLAKLASDHRKPNGQ+VISPE GPAFVE LPVGKF Sbjct: 163 IALAIRARIKTETGLNASAGISYNKFLAKLASDHRKPNGQYVISPETGPAFVEALPVGKF 222 Query: 195 HGIGPATSAKMNALGIFTGLDMRNQTLQFMNANFGKSGAYYYWISRGVDERPVRA 249 HGIGPAT+A+ +ALGI TGLD+R +TL F+ A+FGK+GAYYYWISRG+DERPVRA Sbjct: 223 HGIGPATAARFHALGIQTGLDIRGRTLTFLEAHFGKAGAYYYWISRGIDERPVRA 277 >ref|ZP_08073082.1| DNA-directed DNA polymerase [Methylocystis sp. ATCC 49242] gb|EFX99254.1| DNA-directed DNA polymerase [Methylocystis sp. ATCC 49242] Length = 382 Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust. Identities = 182/245 (74%), Positives = 209/245 (85%) Query: 5 DSEQRDSNAPHRKIIHIDMDAFYASVEQRDNPDLRGKPVAVGGSAERGVVAXASYEARKF 64 D ++ PHRKIIH+DMDAF+ASVEQRDNPDLRGK VAVGGS+ERGVVA ASYEARKF Sbjct: 19 DPPRQFQTPPHRKIIHVDMDAFFASVEQRDNPDLRGKAVAVGGSSERGVVAAASYEARKF 78 Query: 65 GVRSAMPSVTAKRQCPDLIFVRPRFEVYKAISRQIREIFAEHTTIIEPLSLDEAYLDVTE 124 GV SAMPSVTA+R+CPDLIFV+PRF+VYKA+S QIREIFAE+T IIEPLSLDEAYLDVT Sbjct: 79 GVHSAMPSVTARRKCPDLIFVKPRFDVYKAVSTQIREIFAEYTAIIEPLSLDEAYLDVTT 138 Query: 125 NLQGIPLARDIALRIRERIKAETGLNASAGISYNKFLAKLASDHRKPNGQFVISPEMGPA 184 NL+GI A +IA IR I+++ GL ASAG+SYNKFLAKLASDHRKP+G FVI+P MGPA Sbjct: 139 NLKGIETATEIAQEIRAAIRSKIGLTASAGVSYNKFLAKLASDHRKPDGMFVITPRMGPA 198 Query: 185 FVETLPVGKFHGIGPATSAKMNALGIFTGLDMRNQTLQFMNANFGKSGAYYYWISRGVDE 244 FVE + V KFHG+GPAT AKMN LGI TG D+R+Q L F+ NFGK+G ++YWISRGVD Sbjct: 199 FVEGMAVEKFHGVGPATKAKMNRLGIHTGRDLRSQALPFLIENFGKAGGHFYWISRGVDH 258 Query: 245 RPVRA 249 RPVRA Sbjct: 259 RPVRA 263