BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0085.0022.p (291 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_774658.1| DNA polymerase III subunit epsilon [Bradyrhizob... 461 e-128 ref|YP_001990155.1| DNA polymerase III subunit epsilon [Rhodopse... 406 e-111 ref|NP_768937.1| DNA polymerase III subunit epsilon [Bradyrhizob... 324 1e-86 ref|YP_001525397.1| exonuclease [Azorhizobium caulinodans ORS 57... 301 7e-80 ref|YP_421436.1| DNA polymerase III subunit epsilon [Magnetospir... 300 2e-79 >ref|NP_774658.1| DNA polymerase III subunit epsilon [Bradyrhizobium japonicum USDA 110] dbj|BAC53283.1| blr8018 [Bradyrhizobium japonicum USDA 110] Length = 298 Score = 461 bits (1185), Expect = e-128, Method: Compositional matrix adjust. Identities = 213/291 (73%), Positives = 252/291 (86%) Query: 1 LAVMAERLAKSADYRVLRRLVHRETSTRITGQSTKTAILLDVETTGLDQQKDEIIELGMV 60 LA +AE L++S+DYRVLRRLV R +R GQ T+T ILLD ETTGLD +KDEIIELGMV Sbjct: 8 LAALAEALSRSSDYRVLRRLVPRIPLSRPAGQETRTGILLDTETTGLDHRKDEIIELGMV 67 Query: 61 KFDYLPDGRIAGLRDVFSSFNEPSEPIPPDVIALTGITNEMVAGHRIDEAAVSSFAEDAV 120 KFDY PDGRI G+RD F++F+EPS PIPP++ A+TGIT+EMVAG RID+AAVS+F +DAV Sbjct: 68 KFDYTPDGRIVGVRDTFAAFDEPSAPIPPEITAITGITDEMVAGQRIDDAAVSAFVDDAV 127 Query: 121 IVIAHNAGFDRKFAERYWPMFQRKAWGCSATEIEWRKHGFEGSRLSYLLNGAGFFHQAHR 180 I IAHN+GFDRKFAERYWP+F+ KAWGCSATEI+WR+HGF G++L YLLNG GFFHQAHR Sbjct: 128 ITIAHNSGFDRKFAERYWPVFEHKAWGCSATEIDWREHGFAGAQLGYLLNGTGFFHQAHR 187 Query: 181 AVDDCHALLEILAFELPTVGVPALGVLLEQARKKTMRVWAEQSPFELKDALKRRGYRWSD 240 AVDDCHALLE+L F LPT G PAL +LLE AR+ T+RVWAEQ+ FELKD+LKRRGYRW+D Sbjct: 188 AVDDCHALLEVLDFVLPTTGAPALALLLETARRPTLRVWAEQTAFELKDSLKRRGYRWND 247 Query: 241 GSDGRPRSWYVDVDECKLDDEIAFLKAEIYLDEVEPRLQTLTAFDRFSVRA 291 GSDGRP+SW++DV+E LDDEIAFL+AEIY+ EVEP +Q LTAF RFS RA Sbjct: 248 GSDGRPKSWFIDVNESGLDDEIAFLRAEIYMREVEPSVQRLTAFTRFSCRA 298 >ref|YP_001990155.1| DNA polymerase III subunit epsilon [Rhodopseudomonas palustris TIE-1] gb|ACE99679.1| Exonuclease RNase T and DNA polymerase III [Rhodopseudomonas palustris TIE-1] Length = 276 Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust. Identities = 189/275 (68%), Positives = 222/275 (80%) Query: 16 VLRRLVHRETSTRITGQSTKTAILLDVETTGLDQQKDEIIELGMVKFDYLPDGRIAGLRD 75 +LRRLV R T G +T I+LD+ETTGLD DEIIELGMVKFDY +GRI G+R Sbjct: 1 MLRRLVARPPYTPAGGPEVRTGIMLDIETTGLDHSTDEIIELGMVKFDYSAEGRILGVRG 60 Query: 76 VFSSFNEPSEPIPPDVIALTGITNEMVAGHRIDEAAVSSFAEDAVIVIAHNAGFDRKFAE 135 FS+FNEPS PIP ++ A+TGIT+ MVAGH D AV++F +DAVIVIAHN+GFDRKFAE Sbjct: 61 TFSAFNEPSVPIPREITAITGITDGMVAGHGFDVHAVAAFVDDAVIVIAHNSGFDRKFAE 120 Query: 136 RYWPMFQRKAWGCSATEIEWRKHGFEGSRLSYLLNGAGFFHQAHRAVDDCHALLEILAFE 195 RYWP+F+ +AW CS TE++W HGF ++L YLLNGAGFFHQAHRAVDDCHALLEIL F Sbjct: 121 RYWPVFEHRAWACSVTEVDWGAHGFADAQLGYLLNGAGFFHQAHRAVDDCHALLEILDFT 180 Query: 196 LPTVGVPALGVLLEQARKKTMRVWAEQSPFELKDALKRRGYRWSDGSDGRPRSWYVDVDE 255 LPT G PAL +LL+ ARK TMRVWAEQSPFELKD+LK+RGYRW+DGSDGRP SW++DVDE Sbjct: 181 LPTTGAPALALLLDNARKPTMRVWAEQSPFELKDSLKKRGYRWNDGSDGRPNSWFIDVDE 240 Query: 256 CKLDDEIAFLKAEIYLDEVEPRLQTLTAFDRFSVR 290 LD EIAFL+ EIY+ +VEP +Q LTAF RFS R Sbjct: 241 AALDGEIAFLRTEIYMSDVEPSVQRLTAFTRFSSR 275 >ref|NP_768937.1| DNA polymerase III subunit epsilon [Bradyrhizobium japonicum USDA 110] dbj|BAC47562.1| polymerase epsilon subunit [Bradyrhizobium japonicum USDA 110] Length = 201 Score = 324 bits (830), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 148/200 (74%), Positives = 174/200 (87%) Query: 91 VIALTGITNEMVAGHRIDEAAVSSFAEDAVIVIAHNAGFDRKFAERYWPMFQRKAWGCSA 150 + ALTGIT+EMV GHR +AA+++F E AVIVIAHN+GFDRKFAERYWP+F+ KAWGCS Sbjct: 1 MTALTGITDEMVTGHRFHDAAITAFVEGAVIVIAHNSGFDRKFAERYWPLFEHKAWGCSM 60 Query: 151 TEIEWRKHGFEGSRLSYLLNGAGFFHQAHRAVDDCHALLEILAFELPTVGVPALGVLLEQ 210 +EI+WRKHGF G++L YLLNGAGFFHQAHRAVDDCHALLE+L FELPT G PAL +LLE Sbjct: 61 SEIDWRKHGFAGAQLGYLLNGAGFFHQAHRAVDDCHALLEVLDFELPTTGSPALALLLET 120 Query: 211 ARKKTMRVWAEQSPFELKDALKRRGYRWSDGSDGRPRSWYVDVDECKLDDEIAFLKAEIY 270 ARK T+RVWAEQS F+LKD+LKRRGYRW+DGSDGRP+SW++DVDE L+DEIAFLK EIY Sbjct: 121 ARKATLRVWAEQSAFDLKDSLKRRGYRWNDGSDGRPKSWFIDVDETALEDEIAFLKTEIY 180 Query: 271 LDEVEPRLQTLTAFDRFSVR 290 +VEP ++ LTAF RFS R Sbjct: 181 GRDVEPGVRRLTAFTRFSNR 200 >ref|YP_001525397.1| exonuclease [Azorhizobium caulinodans ORS 571] dbj|BAF88479.1| putative exonuclease [Azorhizobium caulinodans ORS 571] Length = 334 Score = 301 bits (771), Expect = 7e-80, Method: Compositional matrix adjust. Identities = 150/281 (53%), Positives = 183/281 (65%) Query: 8 LAKSADYRVLRRLVHRETSTRITGQSTKTAILLDVETTGLDQQKDEIIELGMVKFDYLPD 67 L ++ +RVLRRL R R K A+++D ETTGLD +DE+IELGMV F Y Sbjct: 53 LEETGRFRVLRRLEPRRVVPRALELGEKLAVIVDTETTGLDHTRDEVIELGMVAFTYREG 112 Query: 68 GRIAGLRDVFSSFNEPSEPIPPDVIALTGITNEMVAGHRIDEAAVSSFAEDAVIVIAHNA 127 G I + D FS+ EP+ PI P + LTGIT EMVAG ID A + F + A IVIAHNA Sbjct: 113 GAIGDVVDTFSALREPTVPISPVITKLTGITPEMVAGQSIDLEAAARFIQPASIVIAHNA 172 Query: 128 GFDRKFAERYWPMFQRKAWGCSATEIEWRKHGFEGSRLSYLLNGAGFFHQAHRAVDDCHA 187 FDR F E F K W CS E+ W GFEG++L YL+ G FH HRAVDDCHA Sbjct: 173 RFDRPFCEHLVEGFDVKPWACSVVEVPWADFGFEGTKLGYLIGQCGMFHNGHRAVDDCHA 232 Query: 188 LLEILAFELPTVGVPALGVLLEQARKKTMRVWAEQSPFELKDALKRRGYRWSDGSDGRPR 247 LLE+LA L A G LLE AR+ RVWAE SPF++KDALK RGYRW+DGSDGRP+ Sbjct: 233 LLEVLAAPLKEATGTAFGRLLETARRPRFRVWAENSPFDMKDALKARGYRWNDGSDGRPK 292 Query: 248 SWYVDVDECKLDDEIAFLKAEIYLDEVEPRLQTLTAFDRFS 288 SWY +V++ L +EIAFL+ E+YL VEP +Q LTA +R+ Sbjct: 293 SWYREVEDEALGEEIAFLREEVYLRAVEPYVQKLTAMNRYK 333 >ref|YP_421436.1| DNA polymerase III subunit epsilon [Magnetospirillum magneticum AMB-1] dbj|BAE50877.1| DNA polymerase III epsilon subunit and related 3'-5' exonuclease [Magnetospirillum magneticum AMB-1] Length = 306 Score = 300 bits (768), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 165/288 (57%), Positives = 199/288 (69%) Query: 4 MAERLAKSADYRVLRRLVHRETSTRITGQSTKTAILLDVETTGLDQQKDEIIELGMVKFD 63 MA L + YRVLR+L+ R+ G T+ I +D+ETTGLD KDEIIEL MV F Sbjct: 19 MAVALEATGQYRVLRKLIPRQNLVPHDGSKTRLGIFIDLETTGLDPAKDEIIELAMVPFV 78 Query: 64 YLPDGRIAGLRDVFSSFNEPSEPIPPDVIALTGITNEMVAGHRIDEAAVSSFAEDAVIVI 123 Y DGRI ++D F +PS PIP ++ LTGIT+EMVAG ID A V++FA A IVI Sbjct: 79 YGLDGRIFEIQDAFQGLRQPSNPIPAEITKLTGITDEMVAGKVIDPAEVAAFAAPAAIVI 138 Query: 124 AHNAGFDRKFAERYWPMFQRKAWGCSATEIEWRKHGFEGSRLSYLLNGAGFFHQAHRAVD 183 AHNA FDRKF ER+ P F K WGCS ++++W GFEG++L YLL G G FH HRA D Sbjct: 139 AHNAAFDRKFIERFCPSFSTKPWGCSMSQVDWTGEGFEGTKLGYLLGGFGLFHDGHRATD 198 Query: 184 DCHALLEILAFELPTVGVPALGVLLEQARKKTMRVWAEQSPFELKDALKRRGYRWSDGSD 243 DCHA +EILA LP GVPA+G LLE+AR+ T RVWAE SPF+LKD LK RGYRWSDGSD Sbjct: 199 DCHAAIEILARPLPKSGVPAMGKLLEKAREATCRVWAENSPFDLKDVLKARGYRWSDGSD 258 Query: 244 GRPRSWYVDVDECKLDDEIAFLKAEIYLDEVEPRLQTLTAFDRFSVRA 291 GRPR+W++DV E +L E FL EIY EV+ +TA DRFS+R Sbjct: 259 GRPRAWFIDVPEDQLQQEKDFLVQEIYQREVDIHAARITAVDRFSIRC 306