BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0085.0013.p (204 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_002963731.1| hypothetical protein MexAM1_META1p2688 [meth... 99 5e-19 ref|YP_001166184.1| hypothetical protein Saro_3799 [Novosphingob... 96 4e-18 ref|YP_003546980.1| hypothetical protein SJA_P1-00050 [Sphingobi... 89 4e-16 ref|YP_003528447.1| RES domain-containing protein [Nitrosococcus... 87 2e-15 ref|NP_443999.1| hypothetical 26.0 kDa protein [Sinorhizobium fr... 85 7e-15 >ref|YP_002963731.1| hypothetical protein MexAM1_META1p2688 [methylobacterium extorquens AM1] gb|ACS40454.1| conserved hypothetical protein [Methylobacterium extorquens AM1] Length = 240 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 73/206 (35%), Positives = 112/206 (54%), Gaps = 12/206 (5%) Query: 1 VQLYEGVSAPQDWDAVKRIEELTNPRLR---RGALL----PEDEGKVDQSWLVAPFAYPD 53 V +Y+G+ A +A+ +E++TNPRLR R A L P D ++ Q+W APFAY + Sbjct: 29 VSVYDGLVADGRVEALVAVEDITNPRLRSIDRLARLRPGVPADAPRL-QNWNHAPFAYGN 87 Query: 54 PEPSAFGDGSFGYSIVAESLHSALLVAISRREIFLRRTAEAPTRLVMRVIKVPLKATLQD 113 PE S F D +A +AL V+++RRE FL RT EAP L MR+++ P + D Sbjct: 88 PEGSRFFDHLRPCLELAADRQTALAVSVARRERFLARTREAPIGLDMRMLRTPAEGRFVD 147 Query: 114 LTHL--DLEDPSLKGLIADLRAAKSHGVLVRGPRGKDQPLAVVLRPTAFVQPASQTEHYC 171 L H+ DL+ + + + A + ++++ GVL P VLR + + + QT HY Sbjct: 148 LRHVPADLDAKACREIGARV-SSEADGVLYHPPERSSATCLAVLRASVLGR-SIQTVHYR 205 Query: 172 FLWNGERIHQLFLLPAETKVMVPEDL 197 ++W G RI L+ E + + PE L Sbjct: 206 YVWTGRRIALLYAFDDEGREVRPETL 231 >ref|YP_001166184.1| hypothetical protein Saro_3799 [Novosphingobium aromaticivorans DSM 12444] gb|ABP64658.1| hypothetical protein Saro_3799 [Novosphingobium aromaticivorans DSM 12444] Length = 229 Score = 95.9 bits (237), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 73/201 (36%), Positives = 102/201 (50%), Gaps = 22/201 (10%) Query: 1 VQLYEGVSAPQDWDAVKRIEELTNPRLRR--GALL---PEDE-GKVDQSWLVAPFAYPDP 54 + L+E V+ P+D DAV +IE +TN RLR GAL PED S ++A F + +P Sbjct: 26 IGLFENVALPEDLDAVFQIEAMTNDRLRDEVGALALVPPEDRVSGPGTSPIMAAFTHLNP 85 Query: 55 EPSAFGDGSFGYSIVAESLHSALLVAISRREIFLRRTAEAPTRLVMRVIKVPLKATLQDL 114 E S F DGSFG + +L +A+ R FL T E + MRV V L+A L D+ Sbjct: 86 EGSRFTDGSFGVFYASFTLDTAIAETKHHRAKFLAATDEPGQEIDMRVYAVDLRAELHDI 145 Query: 115 -----THLDLEDP----SLKGLIADLRAAKSHGV---LVRGPRGKDQPLAVVLRPTAFVQ 162 +H DL DP S +GL ++LR S G+ VR P G+ A RP + Sbjct: 146 RGLADSHADLYDPDNYASAQGLASELRDTGSDGIRYLSVRRPGGE---CAAAFRPR-LLS 201 Query: 163 PASQTEHYCFLWNGERIHQLF 183 Q H C++W+G I ++ Sbjct: 202 NCRQERHLCYVWDGTIIKTVY 222 >ref|YP_003546980.1| hypothetical protein SJA_P1-00050 [Sphingobium japonicum UT26S] ref|YP_004556201.1| RES domain protein [Sphingobium chlorophenolicum L-1] ref|YP_004831125.1| hypothetical protein SLG_p_00050 [Sphingobium sp. SYK-6] dbj|BAI98957.1| hypothetical protein SJA_P1-00050 [Sphingobium japonicum UT26S] gb|AEG51695.1| RES domain protein [Sphingobium chlorophenolicum L-1] dbj|BAK68593.1| hypothetical protein SLG_p_00050 [Sphingobium sp. SYK-6] Length = 227 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 64/198 (32%), Positives = 95/198 (47%), Gaps = 16/198 (8%) Query: 1 VQLYEGVSAPQDWDAVKRIEELTNPRLRRG----ALLPEDE--GKVDQSWLVAPFAYPDP 54 + L+E V+ P D +AV IE +TN RLR AL+P ++ S ++A F + +P Sbjct: 25 ISLFEDVADPADLEAVYAIEAMTNDRLRDEVGDLALVPPEDRVSGPGTSAIMAAFTHLNP 84 Query: 55 EPSAFGDGSFGYSIVAESLHSALLVAISRREIFLRRTAEAPTRLVMRVIKVPLKATLQDL 114 + S F DGSFG A ++ +A+ R F+ T E L MRV V L A L D+ Sbjct: 85 DGSRFCDGSFGLFYAASTIETAVAETRHHRTRFMAYTHEPAQELDMRVYAVDLDAMLHDI 144 Query: 115 THLDLEDPSL---------KGLIADLRAAKSHGVLVRGPRGKDQPLAVVLRPTAFVQPAS 165 L E P+L + L LR S G++ + R D A V RP + + Sbjct: 145 RGLRDERPALYAPDSYAAGQALGRHLREQGSDGIVYQSVRDADGECAAVFRPR-LLANSR 203 Query: 166 QTEHYCFLWNGERIHQLF 183 Q H C++W+G I ++ Sbjct: 204 QERHLCYVWDGRAIVTVY 221 >ref|YP_003528447.1| RES domain-containing protein [Nitrosococcus halophilus Nc4] gb|ADE16060.1| RES domain protein [Nitrosococcus halophilus Nc4] Length = 233 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 62/200 (31%), Positives = 95/200 (47%), Gaps = 18/200 (9%) Query: 1 VQLYEGVSAPQDWDAVKRIEELTNPRLRRGA----LLPEDE--GKVDQSWLVAPFAYPDP 54 V L++ V+ P+D + V +IE LTN RLR A L+P +E + ++A F + +P Sbjct: 26 VGLFDRVAEPEDLEIVFKIEALTNDRLRDEAGDIALVPPEERVSGPGTTPIMAAFTHLNP 85 Query: 55 EPSAFGDGSFGYSIVAESLHSALLVAISRREIFLRRTAEAPTRLVMRVIKVPLKATLQDL 114 E S F DG++G A+++ +A+ R FL T E P + MR L A L D+ Sbjct: 86 EGSRFTDGTYGVYYAADTIDTAIAETRFHRARFLAATKELPIEIDMRSYASDLDADLHDI 145 Query: 115 THL-----DLEDPSLKG------LIADLRAAKSHGVLVRGPRGKDQPLAVVLRPTAFVQP 163 + D+ P +G L LR S+G+ R + RP + P Sbjct: 146 RKMQAVMPDVYTPDPRGYVHAQALAKALRHTGSNGLTYESVRSPGGECVAIFRPRV-LSP 204 Query: 164 ASQTEHYCFLWNGERIHQLF 183 Q HYC++WNGE I ++ Sbjct: 205 VRQGPHYCYVWNGEEITAIY 224 >ref|NP_443999.1| hypothetical 26.0 kDa protein [Sinorhizobium fredii NGR234] sp|P55588.1|Y4OC_RHISN RecName: Full=Uncharacterized protein y4oC gb|AAB91796.1| conserved hypothetical 26.0 kDa protein [Sinorhizobium fredii NGR234] Length = 230 Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 69/206 (33%), Positives = 99/206 (48%), Gaps = 14/206 (6%) Query: 1 VQLYEGVSAPQDWDAVKRIEELTNPRLR-RGALLP---EDEGKVDQSWLVAPFAYPDPEP 56 V +YEG+ + +A+ IE TNPRL+ G LL + Q+W +APF Y +PE Sbjct: 21 VAVYEGLVSEDKIEALVEIENKTNPRLQSEGRLLSAHTDPRAPRLQNWNLAPFKYLNPEG 80 Query: 57 SAFGDGSFGYSIVAESLHSALLVAISRREIFLRRTAEAPTRLVMRVIKVPLKATLQDLTH 116 F DGS +A+ +AL +++ RR+ FL RT EAP L MR++K P+ D Sbjct: 81 IRFFDGSRPALELADDRQTALAMSVERRQAFLSRTKEAPIGLDMRLLKTPVSGRFIDFRK 140 Query: 117 --LDL---EDPSLKGLIADLRAAKSHGVLVRGPRGKDQPLAVVLRPTAFVQPASQTEHYC 171 +DL E L G + + + GV+ P VLR + QT HY Sbjct: 141 YPIDLSCEERWRLGGSVPE----GADGVIYHPPERPSAICIAVLRGDVLGR-TIQTVHYR 195 Query: 172 FLWNGERIHQLFLLPAETKVMVPEDL 197 ++WNG RI L+ + PE L Sbjct: 196 YVWNGTRISLLYAFDDAGNEIRPEVL 221