BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0085.0011.p         (167 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_522467.1| hypothetical protein Rfer_1201 [Rhodoferax ferr...    45   0.003
ref|YP_001415685.1| hypothetical protein Xaut_0777 [Xanthobacter...    44   0.009
ref|YP_361639.1| hypothetical protein XCVd0080 [Xanthomonas camp...    43   0.018
ref|ZP_05586428.1| hypothetical protein BthaA_02939 [Burkholderi...    39   0.29 
ref|ZP_06178806.1| hypothetical protein VMC_02360 [Vibrio algino...    36   1.6  

>ref|YP_522467.1| hypothetical protein Rfer_1201 [Rhodoferax ferrireducens T118]
 gb|ABD68936.1| hypothetical protein Rfer_1201 [Rhodoferax ferrireducens T118]
          Length = 160

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 59/112 (52%), Gaps = 10/112 (8%)

Query: 54  VYVEDAEEPLGHELILIEHLPIEFAPLHVAKPGKIATTVRYQGNRSVEDAFRPAATIAKV 113
           ++VED ++    E +   H+P E   +H+ +   +   VRY G R V  +FRP+ TI +V
Sbjct: 47  LFVEDEDDERSFEKL--PHIP-EGLRVHLHRLKGVDVIVRYAG-RDVRRSFRPSTTIGRV 102

Query: 114 TKWAVGKL--APTEDPSDFQLKHDGKVLPP--DSHLGQTAHGAK-SIVLDLV 160
            +WA  +L  APT D ++  L+  G    P  D+H+G      +  +V DLV
Sbjct: 103 KRWATEELGIAPT-DATEMMLQVHGTDNRPDADTHIGTLVEAPQHRVVFDLV 153


>ref|YP_001415685.1| hypothetical protein Xaut_0777 [Xanthobacter autotrophicus Py2]
 gb|ABS66028.1| conserved hypothetical protein [Xanthobacter autotrophicus Py2]
          Length = 169

 Score = 43.9 bits (102), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 1/106 (0%)

Query: 12  IAVVFAAEGQARHHDAEIGPTTTVKEFIDIAVTKTGIDGLLEVYVEDAEEPLGHELILIE 71
           I + +  EG       E+ P  T      +   K G+     +++ED +EP+   ++L +
Sbjct: 4   IDLFYQGEGVGEIAHIELEPDATFAILKGLLADKHGVASDAMLFLEDEDEPIDEAVLLKD 63

Query: 72  HLPIEFAPLHVAKPGKIATTVRYQGNRSVEDAFRPAATIAKVTKWA 117
               +   +H+ +   I  TV +  N +VE  F P  T+A+V +WA
Sbjct: 64  RATAKGLKVHIHRCRHIEVTVTFN-NETVERRFAPGTTVARVKRWA 108


>ref|YP_361639.1| hypothetical protein XCVd0080 [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 emb|CAJ19892.1| hypothetical protein XCVd0080 [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 168

 Score = 42.7 bits (99), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 5/85 (5%)

Query: 80  LHVAKPGKIATTVRYQGNRSVEDAFRPAATIAKVTKWAVGKLA-PTEDPSDFQLKHDGKV 138
           +H+ +  ++A TVR+ G RS E  FRPA TI ++ +WA  +      D ++  L+  G  
Sbjct: 78  VHLHRCKQVAVTVRF-GGRSEEHPFRPATTIGRIRQWAGRRFGLKAGDIAEHVLQIAGSN 136

Query: 139 LPP--DSHLGQ-TAHGAKSIVLDLV 160
             P  D+H+G    H   +IV DLV
Sbjct: 137 EQPDMDTHVGTLVQHPRCAIVFDLV 161


>ref|ZP_05586428.1| hypothetical protein BthaA_02939 [Burkholderia thailandensis E264]
          Length = 208

 Score = 38.5 bits (88), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 8/85 (9%)

Query: 81  HVAKPGKIATTVRYQGNRSVEDAFRPAATIAKVTKWAVGKLAPTEDPS---DFQLKHDGK 137
           HV     +A TV YQ +    D F+  AT+  V  WA+   A   DPS   +F+L   G+
Sbjct: 117 HVHHSSAVAVTVYYQAHELRHD-FKRHATVEDVLAWAIR--AFNIDPSMAVEFELVLHGQ 173

Query: 138 V--LPPDSHLGQTAHGAKSIVLDLV 160
              LP   H+G  A    ++ LDLV
Sbjct: 174 KEELPSTEHIGHLAEHHDNLALDLV 198


>ref|ZP_06178806.1| hypothetical protein VMC_02360 [Vibrio alginolyticus 40B]
 gb|EEZ84914.1| hypothetical protein VMC_02360 [Vibrio alginolyticus 40B]
          Length = 815

 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 6/54 (11%)

Query: 21  QARHHDAEIGPTTTVKEFIDIA---VTKTGIDGLLEVY---VEDAEEPLGHELI 68
           Q RH  AEI PT T++EFID     V   G+DGL  +    VE+A +    E+I
Sbjct: 134 QTRHQSAEIKPTPTLQEFIDCLEDHVWIKGMDGLYSMTNRSVENAWQKTNSEII 187