BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0085.0010.p         (144 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_361640.1| hypothetical protein XCVd0081 [Xanthomonas camp...    60   1e-07
ref|YP_001415686.1| hypothetical protein Xaut_0778 [Xanthobacter...    55   3e-06
ref|YP_615112.1| hypothetical protein Sala_0053 [Sphingopyxis al...    52   2e-05
ref|YP_522466.1| hypothetical protein Rfer_1200 [Rhodoferax ferr...    50   1e-04
ref|YP_004653696.1| Fibronectin type III domain-containing prote...    35   2.8  

>ref|YP_361640.1| hypothetical protein XCVd0081 [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 emb|CAJ19893.1| hypothetical protein XCVd0081 [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 156

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 51/117 (43%), Gaps = 5/117 (4%)

Query: 12  FVSAPVRLGGPTGFLLRSDCSGYPATAPNSQLWHGRDNLPLADAHRPKNRQAGTMISFST 71
           FV   V  G    F+LR DC G+P   P    W     + L DA  P+  +  ++     
Sbjct: 39  FVFIGVIAGNGQEFVLRLDCRGFPTAPPTGTFWDLGAGVRLPDARWPRGGERISLAFRPD 98

Query: 72  W--GACLYHPIDR---LARSHWPGQHEELCWTADKTIVFLLETVHGILDSTDYAGAS 123
           W  G  LY P DR   +    WP Q+ +L W   + I   LE VH +L   D+  A+
Sbjct: 99  WKGGMALYVPCDRESLVGHDAWPAQYPQLIWNPARGISHYLEVVHELLQGIDHERAA 155


>ref|YP_001415686.1| hypothetical protein Xaut_0778 [Xanthobacter autotrophicus Py2]
 gb|ABS66029.1| conserved hypothetical protein [Xanthobacter autotrophicus Py2]
          Length = 157

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/133 (33%), Positives = 57/133 (42%), Gaps = 10/133 (7%)

Query: 1   LLGVKFPIAMFFVSAPVRLGGPTGFLLRSDCSGYPATAPNSQLWHGRDNLPLADAHRPKN 60
           L GV +P    F+ A  R G    ++LR +C+GYP  AP    W  + N  LA    P+ 
Sbjct: 29  LAGVSWPFV--FIGASARDG--REYILRFNCAGYPQAAPTGGPWDLKTNQVLAFDLWPRG 84

Query: 61  RQAGTMISFST-W--GACLYHPIDRLA---RSHWPGQHEELCWTADKTIVFLLETVHGIL 114
           R       F T W  G  LY P DR +     +W  +     W     IV  LE VH +L
Sbjct: 85  RGGRVSAVFRTDWKNGTALYLPCDRESFAGHDNWRHEMPSKIWRPADGIVQYLELVHELL 144

Query: 115 DSTDYAGASLPAA 127
            S DY      AA
Sbjct: 145 QSRDYTAPVRAAA 157


>ref|YP_615112.1| hypothetical protein Sala_0053 [Sphingopyxis alaskensis RB2256]
 gb|ABF51779.1| conserved hypothetical protein [Sphingopyxis alaskensis RB2256]
          Length = 152

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/126 (33%), Positives = 58/126 (46%), Gaps = 9/126 (7%)

Query: 1   LLGVKFPIAMFFVSAPVRLGGPTGFLLRSDCSGYPATAPNSQLWHGRDNLPLADAHRPKN 60
           L  +++P  MF V+A  R G    F LR D +GYPA +P   LW       LA    P  
Sbjct: 28  LRTLEWPHGMFDVTA--RDG--RLFHLRLDFTGYPAASPTGGLWDPDTGAILALDKWPIG 83

Query: 61  RQAGTMISFSTW--GACLYHPIDRLARS---HWPGQHEELCWTADKTIVFLLETVHGILD 115
             A   +    W  G  LY P+DR++ +    WP Q+  L W  D  ++  L  VH +L+
Sbjct: 84  DVAFASVFRRDWQDGRALYMPLDRISLTGHHDWPTQYPHLVWRPDVGLIQYLAEVHRLLN 143

Query: 116 STDYAG 121
              Y G
Sbjct: 144 MRGYHG 149


>ref|YP_522466.1| hypothetical protein Rfer_1200 [Rhodoferax ferrireducens T118]
 gb|ABD68935.1| hypothetical protein Rfer_1200 [Rhodoferax ferrireducens T118]
          Length = 151

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 60/125 (48%), Gaps = 10/125 (8%)

Query: 1   LLGVKFPIAMFFVSAPVRLGGPTGFLLRSDCSGYPATAPNSQLWHGRDNLPLADAHRPKN 60
           L+ V++P+    V A  R G    F LR +C+GYP  AP++ LW       L  A  P+ 
Sbjct: 28  LVQVQWPLVYIEVGA--RDG--RRFTLRFECTGYPEAAPSATLWDSGSQQQLPAALWPRG 83

Query: 61  RQAGTMISFSTW--GACLYHPIDRLA---RSHWPGQHEELCWTADKTIVFLLETVHGILD 115
            +   + +   W  GA LY P DR +    S+W  +H  L W   + ++  +E V  +L 
Sbjct: 84  GRVSQVFN-PGWKGGAALYLPCDRESIPGHSNWLTEHPWLIWNPSRGLLQYIEAVCEVLQ 142

Query: 116 STDYA 120
           S + A
Sbjct: 143 SHELA 147


>ref|YP_004653696.1| Fibronectin type III domain-containing protein [Runella
           slithyformis DSM 19594]
 gb|AEI46564.1| Fibronectin type III domain protein [Runella slithyformis DSM
           19594]
          Length = 1230

 Score = 35.4 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 34/78 (43%), Gaps = 4/78 (5%)

Query: 14  SAPVRLGGPTGFLLRSDCSGYPATAPNSQLWH-GRDNLPLA--DAHRPKNRQAGTMISFS 70
           S P   GGP   +LR+D +G P  A  + +W  G    P A   + R K   A  MI F 
Sbjct: 46  SIPDYYGGPNLNVLRTD-AGTPLRAGTAWIWEKGSQEEPAAYYASMRQKGLNAVRMILFD 104

Query: 71  TWGACLYHPIDRLARSHW 88
           TW    Y P  +   + W
Sbjct: 105 TWEVEAYQPSAQFTPTDW 122