BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0085.0008.p (443 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001415688.1| UBA/ThiF-type NAD/FAD binding fold containin... 194 4e-47 ref|YP_522464.1| hypothetical protein Rfer_1198 [Rhodoferax ferr... 159 6e-37 ref|YP_361642.1| UBA/ThiF-type NAD/FAD binding fold containing p... 141 3e-31 ref|YP_615110.1| UBA/ThiF-type NAD/FAD binding fold containing p... 137 4e-30 ref|ZP_02891675.1| UBA/THIF-type NAD/FAD binding protein [Burkho... 121 2e-25 >ref|YP_001415688.1| UBA/ThiF-type NAD/FAD binding fold containing protein [Xanthobacter autotrophicus Py2] gb|ABS66031.1| UBA/ThiF-type NAD/FAD binding fold containing protein [Xanthobacter autotrophicus Py2] Length = 455 Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 135/395 (34%), Positives = 195/395 (49%), Gaps = 10/395 (2%) Query: 42 AASLPWGQATLLTAAECGVRMFPGGVYLGSDFGETTVVGQ-FGRWPLRRHLEVAGCRTTK 100 AA P QA LLTA G R+F GGV + V+ GR + + + G + Sbjct: 46 AARDPVHQAALLTAVALGRRVFLGGVTVSGALDAPLVLSMPLGRTLAKAVVALGGALELR 105 Query: 101 APE-HAIALHVGAGRRRMQRGVQCWADGW-AGLVGIEAPADPPRGG-NEIGGVLAGAMGI 157 E I + G G RR V+ A GW G++ I + P G + G+L+ A+ + Sbjct: 106 GDECPTIFIGGGPGARREGFCVRTAASGWRGGILPIHSDLQPSAGAAMPLSGMLSAALAV 165 Query: 158 GEVFRSAVLGDKLACRRTSRFSALSPGCE------DGGDIDLAYLPAAFWLLGLGNLGQA 211 E + G A RR FS P + D + L YLP+ WL+GLG+LGQA Sbjct: 166 NEAYLHVSGGMPAAGRRVVGFSLWRPSPDADWLEADAREPALTYLPSRLWLIGLGHLGQA 225 Query: 212 ALWTIGLLPYSDPSLISLFLQDGDKSEFGNLAIQVLTKPDWIGRKKARSAALWAEERGFG 271 LW +GLLPY DP+ ++L LQD D + +L++ D IG++K R+ A WAE RGF Sbjct: 226 YLWALGLLPYRDPAELALVLQDIDLITASTESTSILSESDMIGQRKTRAMAAWAERRGFT 285 Query: 272 TTIIENRFVEGTKRSADEPGLALVGVDNLAARRAAAGSNFDLVLDAGLGATPSEIFDIRI 331 +I E F KR +EP +AL G+DN A RRA FDLV++AGLG + +R+ Sbjct: 286 ASIQERLFAADFKRQPEEPAIALCGLDNAAGRRALDQVGFDLVVEAGLGRGHRDFRTMRL 345 Query: 332 HGFPGTRSPKQAWPEPDFQPEMPLDRTLQELVDAGRIDRCGAVTIAGRSLGVPSTAVAAA 391 H PG R + W + +LV G +DRCG +AG+++G P AA Sbjct: 346 HLLPGRRPAAEMWKAAAGGETVEARPAYAKLVAEGVLDRCGMTLLAGKAVGAPFVGSVAA 405 Query: 392 AIQVAQACRAVCDGGFFDLADVTLVNCRRATGRRH 426 + +++ R + G L D+ L++ + RH Sbjct: 406 CLALSEVLRLLHGGELHGLIDLDLLSPEQRLLWRH 440 >ref|YP_522464.1| hypothetical protein Rfer_1198 [Rhodoferax ferrireducens T118] gb|ABD68933.1| hypothetical protein Rfer_1198 [Rhodoferax ferrireducens T118] Length = 430 Score = 159 bits (403), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 126/382 (32%), Positives = 173/382 (45%), Gaps = 27/382 (7%) Query: 49 QATLLTAAECGVRMFPGGVYLGSDFGETT--------VVGQFGRWPLRRHLEVAGCRTTK 100 Q LTA R F G VY+ + ++G+F W + V + Sbjct: 49 QVIALTAINAASRSFLGNVYIDAPRDMVLRAPGFLGLMLGEFSAW-----VGVTAVSREQ 103 Query: 101 A---PEHAIALHVGAGRRRMQRGVQCWADGWAGLVGIEAPADPPRGGNEIGGVLAGA-MG 156 A P I + G R +Q WADGW VG P GG +A A + Sbjct: 104 AQAWPAIVITANTTVGAVADDRAIQPWADGWRYGVG---PKSSGAGGFFAPACVAAAGLA 160 Query: 157 IGEVFRSAVLGDKLACRRTSRFSALSPGC-EDGGDIDLAYLPA-AFWLLGLGNLGQAALW 214 + E F + A RR S SP C E+G +A + WL+GLG+LGQA W Sbjct: 161 VSEAFSILRCDNPYAGRRAVTLSLWSPSCLENGTPPPMAGVKVPGVWLVGLGHLGQAYAW 220 Query: 215 TIGLL-PYSDPSLISLFLQDGDKSEFGNLAIQVLTKPDWIGRKKARSAALWAEERGFGTT 273 T+G + P ++ +L+ LQD D L+ +L+ +G +K R AA W E RG+ T Sbjct: 221 TLGFMKPEANATLV---LQDVDIISKSTLSTSMLSTAAEMGHRKTRVAASWLEARGYATA 277 Query: 274 IIENRFVEGTKRSADEPGLALVGVDNLAARRAAAGSNFDLVLDAGLGATPSEIFDIRIHG 333 I+E RF E + EP LAL GVDN AARR G+ F V+DAGLG+ + +R+ Sbjct: 278 IVERRFDETQRVHPTEPRLALFGVDNAAARRVVEGAGFSTVVDAGLGSGFRDFRAMRVRT 337 Query: 334 FPGTRSPKQAWPEPDFQPEMPLDRTLQELVDAGRIDRCGAVTIAGRSLGVPSTAVAAAAI 393 FPG S W P+M Q L+ AG D CG T+A R++G P AA Sbjct: 338 FPGPSSAAALWAADTVNPDMAQAPAYQALI-AGGADPCGVTTLASRAVGAPFVGCVAAGY 396 Query: 394 QVAQACRAVCDGGFFDLADVTL 415 +A+ R G + D+ L Sbjct: 397 AIAELLRRQLGGDACSVVDLNL 418 >ref|YP_361642.1| UBA/ThiF-type NAD/FAD binding fold containing protein [Xanthomonas campestris pv. vesicatoria str. 85-10] emb|CAJ19895.1| UBA/ThiF-type NAD/FAD binding fold containing protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 452 Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 122/377 (32%), Positives = 171/377 (45%), Gaps = 27/377 (7%) Query: 48 GQATLLTAAECGVRMFPGGVYLGSDFGETTVVGQFGRWPLRRHLEVAGCRTTKAPEHAI- 106 GQA +LTA R GGV + D V F + G T P + Sbjct: 51 GQACVLTAVSTASRALLGGVEVTGDLTPVMQVPLFAGQRAADVVAALGGAATAMPTPRLP 110 Query: 107 ALHVGAGRRRMQRGVQ-----CWADGWAGLVGIEAPADPPR-----GGNEIGGVLAGAMG 156 +L +G G GV W DGW V APAD N + GV AGA+ Sbjct: 111 SLMIGDGPP--PEGVALTLRPSW-DGWCAQV---APADSDDHLTVGDDNPLAGVCAGALA 164 Query: 157 IGEVFRSAVLGDKLACRRTSRFSALSP-GCEDGGDID-----LAYLPAAFWLLGLGNLGQ 210 + EVF A R S +P ED + LAYLP WL+G+G+LGQ Sbjct: 165 VSEVFSHVRADSPEAGYRRIGLSLWNPLAIEDWNAPENRGPALAYLPTDLWLIGIGHLGQ 224 Query: 211 AALWTIGLLPYSDPSLISLFLQDGDKSEFGNLAIQVLTKPDWIGRKKARSAALWAEERGF 270 A W + +LPY L LQD D+ NL+ +L D + +K R A E GF Sbjct: 225 AYAWGLAMLPYPAQRRPRLVLQDVDRVTESNLSTCLLVGADDVTARKTRVMARRLEAIGF 284 Query: 271 GTTIIENRFVEGTKRSADEPGLALVGVDNLAARRAAAGSNFDLVLDAGLGATPSEIFDIR 330 +++ RF EP +AL GVDN+AARR + F L+++AGLG+ + ++R Sbjct: 285 DIDLVDRRFGAQHLLQPGEPTVALFGVDNVAARRDLDTAAFVLIVEAGLGSGYRDFRNLR 344 Query: 331 IHGFPGTRSPKQAWP-EPDFQPEMPLDRTLQELV-DAGRIDRCGAVTIAGRSLGVPSTAV 388 +H FPG R + WP + QP L+ Q+L D+G D CG +A +++ P Sbjct: 345 LHTFPGPRPATELWPAQAASQPLTELNTAYQQLAHDSG--DLCGVTMLASKAVATPFVGA 402 Query: 389 AAAAIQVAQACRAVCDG 405 AA++ +A+ R + G Sbjct: 403 FAASLALAELVRPLHGG 419 >ref|YP_615110.1| UBA/ThiF-type NAD/FAD binding fold containing protein [Sphingopyxis alaskensis RB2256] gb|ABF51777.1| UBA/ThiF-type NAD/FAD binding fold containing protein [Sphingopyxis alaskensis RB2256] Length = 455 Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 122/396 (30%), Positives = 180/396 (45%), Gaps = 37/396 (9%) Query: 26 ARRKLDRAALVLTADVAASLPWGQATLLTAAECGVRMFPGGVYLGSDFGETTVVGQFGRW 85 AR + RA + +V S+ Q LLT R GGV + S + ++ + Sbjct: 34 ARLRGYRAHIAAGPEVTESIAH-QIALLTFVNIASRFALGGVTV-SGIADVPLLAPWHGD 91 Query: 86 PLRRHLEVAGCRTTKAPEHAIALHVGAGRRRMQRG-VQCWADGWAGLVGIEAPADPPRGG 144 L +E+ G T E + +G+ +RG Q GW G V P GG Sbjct: 92 SLASAVEMLGGATADLAEETPVVLLGSATTPAERGGCQITFAGWRGGV-------VPLGG 144 Query: 145 NEI--------GGVLAGAMGIGEVFRSAVLGDKLA--CRRTSRFSALSPGCED-----GG 189 + + VLAG++ E+F A+L D++ CR G ED Sbjct: 145 SRLDEKETVAAAAVLAGSLAAAEIF--AMLRDEIGAGCRDHGLSIWRPDGDEDWRSPASD 202 Query: 190 DIDLAYLPAAFWLLGLGNLGQAALWTIGLLPYSDPSLISLFLQDGDKSEFGNLAIQVLTK 249 ++ LP W+LGLG+LGQA LWT+ + PYSD + + L LQD D + +LT+ Sbjct: 203 GPPVSVLPNHLWVLGLGHLGQAFLWTLAMSPYSDRASVKLVLQDTDVVTGSTASTSILTR 262 Query: 250 PDWIGRKKARSAALWAEERGFGTTIIENRFVEGTKRSADEPGLALVGVDNLAARRAAAGS 309 P+ GRK R+ A E GF T+IIE F R +D+P + + GVDN AR Sbjct: 263 PETTGRKT-RTVAALLENLGFATSIIERPFDGAFSRRSDDPSVLICGVDNALARTQLELP 321 Query: 310 NFDLVLDAGLGATPSEIFDIRIHGFPGTRSPKQAWP-----EPDFQPEMPLDRTLQELVD 364 F+LV++AG+G T S+ +R+H FP R+ + W MP Q L + Sbjct: 322 RFELVIEAGIGRTASDFRAVRLHSFPSQRAAAELWKAGAAAGVATAGNMP---GYQRLRE 378 Query: 365 AGRIDRCGAVTIAGRSLGVPSTAVAAAAIQVAQACR 400 +G +D CG +AG ++G P A A+ Q + Sbjct: 379 SG-VDDCGLALLAGTAVGAPFVGGVAGALMFGQILK 413 >ref|ZP_02891675.1| UBA/THIF-type NAD/FAD binding protein [Burkholderia ambifaria IOP40-10] gb|EDT02737.1| UBA/THIF-type NAD/FAD binding protein [Burkholderia ambifaria IOP40-10] Length = 477 Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 131/431 (30%), Positives = 184/431 (42%), Gaps = 43/431 (9%) Query: 9 RLAHLLMRGDGHAGYDEAR--RKLDRAALVLTADVAASLPWGQATLLTAAECGVRMF--- 63 R+ + + DG A E+R R R +V+ ADVA S Q LLT V+ F Sbjct: 24 RIDKIWLDRDGTAP-KESRIARAARRLQIVVGADVANSHA-KQVALLTVVNLAVKCFAAP 81 Query: 64 -----PGGVYLGSDFGETTVVGQFGRWPL----RRHLEVAGCRTTKAPEHAIALHVGAGR 114 P V+ ++ G +RHLE P+ L A Sbjct: 82 VQVIAPDSVWAARTLVRVSLQSTLGNALEELGGQRHLEGVD------PDRVHILLGDADP 135 Query: 115 RRMQRGVQCWADGWAGLVGIEAPAD--PPRGGNEIGGVLAGAMGIGEVFRSAVLGDKLAC 172 RR+ ++ DGW VG A P R + + A A+ +GEVF S A Sbjct: 136 RRLS--LRITFDGWKVSVGPAAQVARLPERPWCALAPLAAAAVAVGEVFASFARISVAAA 193 Query: 173 RRTSRFSALSPGCED------GGDIDLAYLPAAFWLLGLGNLGQAALWTIGLLPYSDPSL 226 RR FS P D GG ID A P GLG+LGQA LW + LP+S Sbjct: 194 RRAIGFSLWRPDLPDDSSDSIGGAIDEA--PVELSCFGLGHLGQAYLWALACLPFSTTKG 251 Query: 227 ISLFLQDGDKSEFGNLAIQVLTKPDWIGRKKARSAALWAEERGFGTTIIENRFVEGTKRS 286 ++L D D E NL L D +G K R + W +RGF T +IE RFV+G R Sbjct: 252 SRIYLCDDDLVESPNLETGALLNSDTLGHPKTRVVSEWLMKRGFDTRLIE-RFVDGNYRR 310 Query: 287 AD-EPGLALVGVDNLAARRAAAGSNFDLVLDAGLGATPSEIFDIRIHGFPGTRSPKQAWP 345 +D EP +AL G D+ AR+ + F L+ D+GLG + +H +P R WP Sbjct: 311 SDREPVIALSGFDDNEARQWLTQAGFPLIFDSGLGGEVGTFDSVAVHTWPNRRPAADLWP 370 Query: 346 EPDFQPEMPLDRTLQELVDAGR------IDRCGAVTIAGRSLGVPSTAVAAAAIQVAQAC 399 Q + + +A + D CG V +AG+S+ VP ++A +++ Sbjct: 371 LESAQARREREERARRRAEANQGYGALAPDECGRVLVAGKSVAVPFVGAVSSAFVLSEML 430 Query: 400 RAVCDG-GFFD 409 R + G F+D Sbjct: 431 RTLNAGPAFYD 441