BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0085.0007.p         (56 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001239725.1| hypothetical protein BBta_3741 [Bradyrhizobi...    38   0.48 

>ref|YP_001239725.1| hypothetical protein BBta_3741 [Bradyrhizobium sp. BTAi1]
 gb|ABQ35819.1| hypothetical protein BBta_3741 [Bradyrhizobium sp. BTAi1]
          Length = 101

 Score = 38.1 bits (87), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 10/61 (16%)

Query: 1  VPRSDVFVQAAGGTNSAGTRPACSE--------AKTAPEEHEEVGGLRVSVDFHGEDSER 52
          + R+DVFVQA+G  NSAG+R A ++         K+   E E  G + VSVD H +D E 
Sbjct: 28 IARTDVFVQASGAANSAGSRAAGADVHSGHPGVGKSGKPELE--GEIEVSVDCHADDPEV 85

Query: 53 I 53
          +
Sbjct: 86 V 86