BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0085.0003.p (298 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001240376.1| LysR family transcriptional regulator [Brady... 493 e-137 ref|YP_001206035.1| LysR family transcriptional regulator [Brady... 482 e-134 ref|YP_488104.1| LysR family transcriptional regulator [Rhodopse... 315 4e-84 ref|NP_925497.1| LysR family transcriptional regulator [Gloeobac... 216 5e-54 ref|YP_001203021.1| transcriptional regulator [Bradyrhizobium sp... 212 4e-53 >ref|YP_001240376.1| LysR family transcriptional regulator [Bradyrhizobium sp. BTAi1] gb|ABQ36470.1| transcriptional regulator, LysR family [Bradyrhizobium sp. BTAi1] Length = 301 Score = 493 bits (1269), Expect = e-137, Method: Compositional matrix adjust. Identities = 234/298 (78%), Positives = 269/298 (90%) Query: 1 MDRIDALQTFIRVMEAGSFSQAASDLGLGQPAISKRVALLEAEFGCRLFVRTTRKVRPTP 60 MDRIDALQTFIRVMEAGSF+QAA+DLGLGQPAI+KR+ALLE +FGCRLFVRTTRK+RPT Sbjct: 1 MDRIDALQTFIRVMEAGSFTQAAADLGLGQPAITKRIALLEEQFGCRLFVRTTRKLRPTA 60 Query: 61 EADRVLKLAKDIVALLESASTPAQSRVRSPSGTLRITVPTSFGRYFFRGIFAEYLYRYPD 120 EADRVLKLAK+IV L ESA P+ RV +PSGTLR+TVPTSFGRYFF IFAEY RYP+ Sbjct: 61 EADRVLKLAKEIVTLFESAGLPSPKRVGAPSGTLRMTVPTSFGRYFFGDIFAEYGRRYPE 120 Query: 121 VRLDVSFTEQFVDLVETGTELAVRIGMLNSSSLVARRVGTIKRLLVAAPSLLARHQAPLL 180 VRLD+ FTEQFVDLVETGTELA+RIG+L+SSSLVARRVGT+KRLLVAAP+LL RH+ P L Sbjct: 121 VRLDIRFTEQFVDLVETGTELAIRIGVLSSSSLVARRVGTVKRLLVAAPALLTRHRPPRL 180 Query: 181 PDHLRRMPSITYSRLSPRNQWTFEAETGRHVVEIAPSMNCDDADVMTLATVEGLGVAVLP 240 P+ LR++P +TYSRLSP+N+W+FE+ETGRHVV I PS+ CDDAD+M+LA +EGLG AVLP Sbjct: 181 PNDLRQLPCVTYSRLSPKNEWSFESETGRHVVGITPSLTCDDADIMSLAALEGLGAAVLP 240 Query: 241 TWCAVEHIAAGRLVHLLPDYAVPSLPMHLVYPDPHWMSHRARLFRDLIIERADMFAIG 298 WCAV HIA+G+LVHLLPDY VPSLP+H+VYPDP WMSHRARLFRDLIIERAD+FAI Sbjct: 241 DWCAVGHIASGKLVHLLPDYDVPSLPLHVVYPDPQWMSHRARLFRDLIIERADVFAIN 298 >ref|YP_001206035.1| LysR family transcriptional regulator [Bradyrhizobium sp. ORS 278] emb|CAL77810.1| putative transcriptional regulatory protein, LysR family [Bradyrhizobium sp. ORS 278] Length = 299 Score = 482 bits (1240), Expect = e-134, Method: Compositional matrix adjust. Identities = 238/298 (79%), Positives = 270/298 (90%) Query: 1 MDRIDALQTFIRVMEAGSFSQAASDLGLGQPAISKRVALLEAEFGCRLFVRTTRKVRPTP 60 MDRIDALQTFIRVMEAGSF+QAA+DLGLGQPAI+KR+ALLE +FGCRLFVRTTRK+RPTP Sbjct: 1 MDRIDALQTFIRVMEAGSFTQAAADLGLGQPAITKRIALLEEQFGCRLFVRTTRKLRPTP 60 Query: 61 EADRVLKLAKDIVALLESASTPAQSRVRSPSGTLRITVPTSFGRYFFRGIFAEYLYRYPD 120 EADRVLKLAKDIV L ESA P+ RV +PSGTLR+TVPTSFGRYFF IFAEY RYPD Sbjct: 61 EADRVLKLAKDIVTLFESAGVPSPRRVGAPSGTLRMTVPTSFGRYFFADIFAEYGRRYPD 120 Query: 121 VRLDVSFTEQFVDLVETGTELAVRIGMLNSSSLVARRVGTIKRLLVAAPSLLARHQAPLL 180 VRLD+ FTEQ VDLVETGTELA+RIG+L+SSSLVARRVGT+KRLL AAPSLLARH+ P L Sbjct: 121 VRLDIRFTEQVVDLVETGTELAIRIGVLSSSSLVARRVGTVKRLLAAAPSLLARHRPPRL 180 Query: 181 PDHLRRMPSITYSRLSPRNQWTFEAETGRHVVEIAPSMNCDDADVMTLATVEGLGVAVLP 240 P+ LR++P +TYSRLSP+N+W+FE+ETGRHVV I P++ CDDAD+MTLA +EGLG AVLP Sbjct: 181 PNDLRQLPCVTYSRLSPKNEWSFESETGRHVVGITPTLTCDDADIMTLAALEGLGAAVLP 240 Query: 241 TWCAVEHIAAGRLVHLLPDYAVPSLPMHLVYPDPHWMSHRARLFRDLIIERADMFAIG 298 WCAVEHIA+GRL+HLLPDY VPSLP+H+VYPDP W SHRARLFRDLIIERAD+FAIG Sbjct: 241 DWCAVEHIASGRLIHLLPDYDVPSLPLHVVYPDPQWTSHRARLFRDLIIERADVFAIG 298 >ref|YP_488104.1| LysR family transcriptional regulator [Rhodopseudomonas palustris HaA2] gb|ABD09193.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris HaA2] Length = 308 Score = 315 bits (808), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 151/296 (51%), Positives = 207/296 (69%) Query: 1 MDRIDALQTFIRVMEAGSFSQAASDLGLGQPAISKRVALLEAEFGCRLFVRTTRKVRPTP 60 MDR+D L+ F++ ME GSFS AA +LGLGQPA+SKR+ALLE EFG +LF+R TRK+ PT Sbjct: 1 MDRLDCLRAFVKTMEGGSFSGAAKELGLGQPAVSKRIALLEKEFGSQLFMRNTRKLTPTR 60 Query: 61 EADRVLKLAKDIVALLESASTPAQSRVRSPSGTLRITVPTSFGRYFFRGIFAEYLYRYPD 120 EA R+ LA+ ++ +E A P+G LR+ VP+SFGR++ + +YL YP Sbjct: 61 EAHRIYDLARQALSCIEMARASIAEAPAVPTGMLRLGVPSSFGRHYIMPVIEQYLRDYPQ 120 Query: 121 VRLDVSFTEQFVDLVETGTELAVRIGMLNSSSLVARRVGTIKRLLVAAPSLLARHQAPLL 180 V++D+ F+EQ V+LVE G ELA+RIG L SSSL ARR+G ++R LVA P+ L R P L Sbjct: 121 VKVDIRFSEQTVNLVEDGIELALRIGDLESSSLKARRIGLVRRFLVATPAYLRRQPQPQL 180 Query: 181 PDHLRRMPSITYSRLSPRNQWTFEAETGRHVVEIAPSMNCDDADVMTLATVEGLGVAVLP 240 P L+ + I Y+RLSP NQW F++E GRHVV+I+ S+ DDAD M A ++ LGVA+LP Sbjct: 181 PGDLKNLHCIAYARLSPANQWAFDSELGRHVVQISASIMVDDADAMKQAVLQNLGVAILP 240 Query: 241 TWCAVEHIAAGRLVHLLPDYAVPSLPMHLVYPDPHWMSHRARLFRDLIIERADMFA 296 W A + + +G + +LP++AVP+LP++ VY D WMS RAR F DL+I R+ F+ Sbjct: 241 AWSAADAVRSGEMEIVLPEFAVPALPLNAVYADTQWMSLRARCFLDLLIARSHRFS 296 >ref|NP_925497.1| LysR family transcriptional regulator [Gloeobacter violaceus PCC 7421] dbj|BAC90492.1| LysR family transcriptional regulatory protein [Gloeobacter violaceus PCC 7421] Length = 316 Score = 216 bits (549), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 111/288 (38%), Positives = 170/288 (59%), Gaps = 1/288 (0%) Query: 1 MDRIDALQTFIRVMEAGSFSQAASDLGLGQPAISKRVALLEAEFGCRLFVRTTRKVRPTP 60 MDRI +++F+R +E GSFS A ++ QP +SK++A LE G RL VR+TR++ PT Sbjct: 1 MDRIACMRSFVRAVETGSFSAVAREMATTQPTVSKQIAALEEHLGARLLVRSTRRLGPTE 60 Query: 61 EADRVLKLAKDIVALLESASTPAQSRVRSPSGTLRITVPTSFGRYFFRGIFAEYLYRYPD 120 E +R + + ++ +E A +S R P G LR++ P +FG+Y E+L RYPD Sbjct: 61 EGERYYRQCRRVLEAIEEAEASVRSAER-PFGRLRVSCPVAFGQYRIVPRVKEFLDRYPD 119 Query: 121 VRLDVSFTEQFVDLVETGTELAVRIGMLNSSSLVARRVGTIKRLLVAAPSLLARHQAPLL 180 + LD++ T+ FVDL+E G ELA+RIG+L SSLVA R+GT +R+ V + + A P Sbjct: 120 IELDLTMTDGFVDLIEAGAELAIRIGLLEDSSLVAHRIGTTRRVTVGSAAYFAGAGEPRT 179 Query: 181 PDHLRRMPSITYSRLSPRNQWTFEAETGRHVVEIAPSMNCDDADVMTLATVEGLGVAVLP 240 + L R + Y+ L+ N W+FE+++G V++ + C+++ + A + GLGVAV P Sbjct: 180 LEDLTRHNCLVYTHLATGNTWSFESQSGPVQVKVRGNFQCNNSAAIREAVLAGLGVAVSP 239 Query: 241 TWCAVEHIAAGRLVHLLPDYAVPSLPMHLVYPDPHWMSHRARLFRDLI 288 W E + G L +L D+ P LP+H VY + R R F D + Sbjct: 240 VWLFGEDLDRGVLQVVLHDFQPPPLPIHAVYLKDRYQPARVRCFVDFL 287 >ref|YP_001203021.1| transcriptional regulator [Bradyrhizobium sp. ORS 278] emb|CAL74784.1| putative transcriptional regulatory protein domain, LysR family [Bradyrhizobium sp. ORS 278] Length = 297 Score = 212 bits (540), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 107/291 (36%), Positives = 173/291 (59%) Query: 1 MDRIDALQTFIRVMEAGSFSQAASDLGLGQPAISKRVALLEAEFGCRLFVRTTRKVRPTP 60 MD++ +L+ F++V+E+GSF++A L L + AISK + LE G +L VRTTR PT Sbjct: 1 MDKLSSLRAFVKVVESGSFAEAGRQLRLSRSAISKYIGELEQSLGVQLIVRTTRHASPTE 60 Query: 61 EADRVLKLAKDIVALLESASTPAQSRVRSPSGTLRITVPTSFGRYFFRGIFAEYLYRYPD 120 R + A I+A L++A +P G LR+ P SFG + A+++ R+P+ Sbjct: 61 TGQRYFERAVAILAELDAADQAVSQSQAAPRGLLRVNAPMSFGTMRLGPVVADFMVRFPE 120 Query: 121 VRLDVSFTEQFVDLVETGTELAVRIGMLNSSSLVARRVGTIKRLLVAAPSLLARHQAPLL 180 ++L + ++ +D V+ G ++ +RI L SSSLVARR+ + R++ AAP+ LARH P Sbjct: 121 LQLQIVLSDDLLDPVQDGFDVTLRIAELESSSLVARRITPVDRVICAAPAYLARHGTPES 180 Query: 181 PDHLRRMPSITYSRLSPRNQWTFEAETGRHVVEIAPSMNCDDADVMTLATVEGLGVAVLP 240 P+ LRR S+TY L NQW G H ++ A S+ ++A+V+ ++G G+A++P Sbjct: 181 PEELRRHSSLTYGFLLTGNQWKLTGRDGNHWIQPAWSLCVNNAEVLRDVAIKGQGIALIP 240 Query: 241 TWCAVEHIAAGRLVHLLPDYAVPSLPMHLVYPDPHWMSHRARLFRDLIIER 291 + A + +A+G L +L DY P L ++ +YP +S + RLF D ++ER Sbjct: 241 RFIAADALASGALTAILSDYTAPPLALYAIYPPTRHLSVKVRLFIDFLVER 291