BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0084.0032.p         (143 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_769247.1| hypothetical protein blr2607 [Bradyrhizobium ja...   140   6e-32
ref|YP_001204216.1| putative signal peptide [Bradyrhizobium sp. ...   114   4e-24
ref|YP_001238517.1| hypothetical protein BBta_2444 [Bradyrhizobi...   102   2e-20
ref|ZP_01051569.1| transcription termination factor Rho [Dokdoni...    34   7.1  

>ref|NP_769247.1| hypothetical protein blr2607 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC47872.1| blr2607 [Bradyrhizobium japonicum USDA 110]
          Length = 139

 Score =  140 bits (353), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 78/145 (53%), Positives = 89/145 (61%), Gaps = 8/145 (5%)

Query: 1   MVLKNAFVAIVCAACLTWGGVAFADEYGPSEFFSLDLSKAVLSPKRLGPPAQFEPVPVEA 60
           MVLK+   A+  A  L WGG + AD+Y P E+F LDLSKAVLSPKRLGP  +F PV +EA
Sbjct: 1   MVLKSVHFAVAVALVLAWGGASRADDYKPDEYFGLDLSKAVLSPKRLGPETRFAPVALEA 60

Query: 61  KADHGPDQHANVEPQVEETKVAPKKAVRTTRVTAPHERKRAAAQ--IPARAKLARRHSNP 118
           +   G +  A  EP      V  K A     V  P      AAQ    AR KLA R  NP
Sbjct: 61  RG--GNEAQARAEP----VDVPKKVAAERVHVAEPKVAHVKAAQPRGAARTKLAHRRGNP 114

Query: 119 LDAEARDTRIQTWPCRTGGICNWHR 143
           LDA+ARDTRIQTWPCR+GGICNW R
Sbjct: 115 LDAQARDTRIQTWPCRSGGICNWQR 139


>ref|YP_001204216.1| putative signal peptide [Bradyrhizobium sp. ORS 278]
 emb|CAL75979.1| conserved hypothetical protein; putative signal peptide
           [Bradyrhizobium sp. ORS 278]
          Length = 145

 Score =  114 bits (285), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 71/145 (48%), Positives = 85/145 (58%), Gaps = 12/145 (8%)

Query: 6   AFVAIVCAACLTWGGVAFADEYGPSEFFSLDLSKAVLSPKRLGPPAQFEPVPVEAKADHG 65
           AFV  +  A L  G  A A  Y P +FF LDLSKAVLSP+ LGP A FE VP+EAK D  
Sbjct: 3   AFVGTIVCAALLVGTEATAGAYEPGDFFRLDLSKAVLSPEPLGPEAHFEAVPIEAKTDVR 62

Query: 66  PDQHANVEPQVEETKVAPKKAVRTTRVTAPHERKRAAAQIP---ARAKLARRHSNPLDAE 122
            D+ A V      T V+   ++    V    +R   AA+ P   ARAKLA R  NP+DA+
Sbjct: 63  TDRRAAVS---RSTIVSDGSSIVPHAVAPRRDRSEMAAERPRGAARAKLAHRRGNPMDAQ 119

Query: 123 ARDTR----IQTWPCR--TGGICNW 141
           A DTR    IQTWPC+  +GGICNW
Sbjct: 120 AMDTRSGTFIQTWPCKPGSGGICNW 144


>ref|YP_001238517.1| hypothetical protein BBta_2444 [Bradyrhizobium sp. BTAi1]
 gb|ABQ34611.1| putative exported protein of unknown function [Bradyrhizobium sp.
           BTAi1]
          Length = 132

 Score =  102 bits (254), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/144 (43%), Positives = 78/144 (54%), Gaps = 14/144 (9%)

Query: 1   MVLKNAFVAIVCAACLTWGGVAFADEYGPSEFFSLDLSKAVLSPKRLGPPAQFEPVPVEA 60
           M L+N F  + CA  +    V+ AD Y P E F LDLS+AVLSP+ LGP A FEPVP+EA
Sbjct: 1   MELRNLFGILTCATLVCGTAVSAAD-YQPGEVFRLDLSRAVLSPRPLGPEAHFEPVPIEA 59

Query: 61  KADHGPDQHANVEPQVEETKVAPKKAVRTTRVTAPHERKRAAAQIPARAKLARRHSNPLD 120
           +        A  +P +     A K+      +    ER R A +   R  L       LD
Sbjct: 60  RVGSALVAAAQDKPDLPRNAAASKR----RSIVRSAERLRTAREAMHRRSL-------LD 108

Query: 121 AEARDTRIQTWPCR--TGGICNWH 142
           A+A DTR+QTWPCR  +GGICNW 
Sbjct: 109 AQAMDTRVQTWPCRPDSGGICNWR 132


>ref|ZP_01051569.1| transcription termination factor Rho [Dokdonia donghaensis MED134]
 gb|EAQ37685.1| transcription termination factor Rho [Dokdonia donghaensis MED134]
          Length = 574

 Score = 34.3 bits (77), Expect = 7.1,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 3/82 (3%)

Query: 54  EPVPVEAKADHGPDQHANV-EPQVEETKVAPK--KAVRTTRVTAPHERKRAAAQIPARAK 110
           +P  VEA    G ++ A   +P+ E     P+  KA    + T P ++K A AQ  A AK
Sbjct: 46  DPKKVEAVVPKGKEESAPAPKPKQERKPRTPRAPKATTEAKATTPEDKKEAPAQKEAPAK 105

Query: 111 LARRHSNPLDAEARDTRIQTWP 132
                  P  A+ +DT     P
Sbjct: 106 KEAVKREPAKAKVKDTEEAKTP 127