BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0084.0029.p (604 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_769363.2| indolepyruvate ferredoxin oxidoreductase [Brady... 868 0.0 dbj|BAC47988.1| bll2723 [Bradyrhizobium japonicum USDA 110] 868 0.0 ref|YP_004475172.1| Pyruvate/ketoisovalerate oxidoreductase [Pse... 619 e-175 ref|YP_004379565.1| indolepyruvate ferredoxin oxidoreductase [Ps... 617 e-174 ref|YP_236093.1| indolepyruvate ferredoxin oxidoreductase [Pseud... 617 e-174 >ref|NP_769363.2| indolepyruvate ferredoxin oxidoreductase [Bradyrhizobium japonicum USDA 110] Length = 1158 Score = 868 bits (2244), Expect = 0.0, Method: Compositional matrix adjust. Identities = 420/537 (78%), Positives = 459/537 (85%), Gaps = 39/537 (7%) Query: 1 MALMEVGLDDKYRLDTKRIFLSGTQALVRLPMLQRERDRAHGLNTAGFISGYRGSPLGMY 60 M LM+V LDDKYRL++KRIFLSGTQALVRLPMLQRERDR GLNT GFISGYRGSPLGMY Sbjct: 1 MTLMQVELDDKYRLESKRIFLSGTQALVRLPMLQRERDRLQGLNTGGFISGYRGSPLGMY 60 Query: 61 DHALWRAKSFLKEHDIAFVPGLNEDLAATAVWGSQQVGMFPGAKVDGVFGIWYGKGPGVD 120 DHALWRAKSFL++HDIAFVPGLNEDLAATAVWGSQQVG+FPGAKVDGVFGIWYGKGPGVD Sbjct: 61 DHALWRAKSFLQQHDIAFVPGLNEDLAATAVWGSQQVGLFPGAKVDGVFGIWYGKGPGVD 120 Query: 121 RSLDALKHANSAGTSPNGGVIALAGDDHGCQSSTLAHQSEQVFASALMPVVNPATLQDYL 180 RS+DALKHAN+AGTS NGGV+ALAGDDHGCQSSTLAHQSEQVFA+AL+PV+NPATLQDYL Sbjct: 121 RSVDALKHANAAGTSLNGGVLALAGDDHGCQSSTLAHQSEQVFAAALIPVINPATLQDYL 180 Query: 181 DLGILGFALSRYSGCWVGFKAISETVESSASIVSDPDRIKIIMPDDFEMPLGGLSIRWPD 240 DLG+ GFALSR+SGCWVGFKAISETVESSASI SDP+RI+I +P DFEMP GGL+IRWPD Sbjct: 181 DLGLYGFALSRFSGCWVGFKAISETVESSASIDSDPERIQIKLPHDFEMPPGGLNIRWPD 240 Query: 241 PPLEAERRLHGPKMEAVAAFARVNRFDRIVLDSKPARLGIMATGKAYLDLRQALADLGIT 300 PPL+AERRL GPKM AV AFAR N+ DRIVLDSKPARLGI+ATGKAYLDLRQALADLGIT Sbjct: 241 PPLDAERRLFGPKMAAVQAFARANQLDRIVLDSKPARLGIVATGKAYLDLRQALADLGIT 300 Query: 301 DADAQALGLRIYKVALTWPLEARGARAFAEGLQDVLVVEEKRGFIEDQLVRILYNMDAAK 360 D DAQ LGLRIYKVALTWPLE GAR FAEGLQDVLVVEEKRGFIEDQL+RILYN+DA++ Sbjct: 301 DKDAQDLGLRIYKVALTWPLEESGARRFAEGLQDVLVVEEKRGFIEDQLMRILYNIDASR 360 Query: 361 RPSVVGKRDESGAPLLPSEGELTPTMVAAAVVARLRRLGHRSPLLEQRLAKLEAFDRPAE 420 RP+V GKRDE GAPLLPSEGELTPT+VA A+VARLR+LGH SP+LEQRLA+LEAFD P Sbjct: 361 RPTVTGKRDERGAPLLPSEGELTPTIVAGALVARLRKLGHHSPVLEQRLARLEAFDNPVT 420 Query: 421 GVGTAKLQRTPYFCSGCPHNSSTKIPEGSRAMAGIGCHFMASWMDRETSSLIQMGGEGVN 480 KL RTP+FCSGCPHNSST++PEGSRAMAGIGCH Sbjct: 421 TSAPIKLARTPFFCSGCPHNSSTRVPEGSRAMAGIGCH---------------------- 458 Query: 481 WAASSKFTGNSHVFQNLXMALSVPNRNTQTISHMGAEGVSWIGQAPFTSEQHVFQNL 537 MALS+P R T ISHMGAEGV+WIGQ+PFT+EQH+FQNL Sbjct: 459 -----------------GMALSMPTRRTDLISHMGAEGVNWIGQSPFTTEQHIFQNL 498 >dbj|BAC47988.1| bll2723 [Bradyrhizobium japonicum USDA 110] Length = 1199 Score = 868 bits (2244), Expect = 0.0, Method: Compositional matrix adjust. Identities = 420/537 (78%), Positives = 459/537 (85%), Gaps = 39/537 (7%) Query: 1 MALMEVGLDDKYRLDTKRIFLSGTQALVRLPMLQRERDRAHGLNTAGFISGYRGSPLGMY 60 M LM+V LDDKYRL++KRIFLSGTQALVRLPMLQRERDR GLNT GFISGYRGSPLGMY Sbjct: 42 MTLMQVELDDKYRLESKRIFLSGTQALVRLPMLQRERDRLQGLNTGGFISGYRGSPLGMY 101 Query: 61 DHALWRAKSFLKEHDIAFVPGLNEDLAATAVWGSQQVGMFPGAKVDGVFGIWYGKGPGVD 120 DHALWRAKSFL++HDIAFVPGLNEDLAATAVWGSQQVG+FPGAKVDGVFGIWYGKGPGVD Sbjct: 102 DHALWRAKSFLQQHDIAFVPGLNEDLAATAVWGSQQVGLFPGAKVDGVFGIWYGKGPGVD 161 Query: 121 RSLDALKHANSAGTSPNGGVIALAGDDHGCQSSTLAHQSEQVFASALMPVVNPATLQDYL 180 RS+DALKHAN+AGTS NGGV+ALAGDDHGCQSSTLAHQSEQVFA+AL+PV+NPATLQDYL Sbjct: 162 RSVDALKHANAAGTSLNGGVLALAGDDHGCQSSTLAHQSEQVFAAALIPVINPATLQDYL 221 Query: 181 DLGILGFALSRYSGCWVGFKAISETVESSASIVSDPDRIKIIMPDDFEMPLGGLSIRWPD 240 DLG+ GFALSR+SGCWVGFKAISETVESSASI SDP+RI+I +P DFEMP GGL+IRWPD Sbjct: 222 DLGLYGFALSRFSGCWVGFKAISETVESSASIDSDPERIQIKLPHDFEMPPGGLNIRWPD 281 Query: 241 PPLEAERRLHGPKMEAVAAFARVNRFDRIVLDSKPARLGIMATGKAYLDLRQALADLGIT 300 PPL+AERRL GPKM AV AFAR N+ DRIVLDSKPARLGI+ATGKAYLDLRQALADLGIT Sbjct: 282 PPLDAERRLFGPKMAAVQAFARANQLDRIVLDSKPARLGIVATGKAYLDLRQALADLGIT 341 Query: 301 DADAQALGLRIYKVALTWPLEARGARAFAEGLQDVLVVEEKRGFIEDQLVRILYNMDAAK 360 D DAQ LGLRIYKVALTWPLE GAR FAEGLQDVLVVEEKRGFIEDQL+RILYN+DA++ Sbjct: 342 DKDAQDLGLRIYKVALTWPLEESGARRFAEGLQDVLVVEEKRGFIEDQLMRILYNIDASR 401 Query: 361 RPSVVGKRDESGAPLLPSEGELTPTMVAAAVVARLRRLGHRSPLLEQRLAKLEAFDRPAE 420 RP+V GKRDE GAPLLPSEGELTPT+VA A+VARLR+LGH SP+LEQRLA+LEAFD P Sbjct: 402 RPTVTGKRDERGAPLLPSEGELTPTIVAGALVARLRKLGHHSPVLEQRLARLEAFDNPVT 461 Query: 421 GVGTAKLQRTPYFCSGCPHNSSTKIPEGSRAMAGIGCHFMASWMDRETSSLIQMGGEGVN 480 KL RTP+FCSGCPHNSST++PEGSRAMAGIGCH Sbjct: 462 TSAPIKLARTPFFCSGCPHNSSTRVPEGSRAMAGIGCH---------------------- 499 Query: 481 WAASSKFTGNSHVFQNLXMALSVPNRNTQTISHMGAEGVSWIGQAPFTSEQHVFQNL 537 MALS+P R T ISHMGAEGV+WIGQ+PFT+EQH+FQNL Sbjct: 500 -----------------GMALSMPTRRTDLISHMGAEGVNWIGQSPFTTEQHIFQNL 539 >ref|YP_004475172.1| Pyruvate/ketoisovalerate oxidoreductase [Pseudomonas fulva 12-X] gb|AEF23078.1| Pyruvate/ketoisovalerate oxidoreductase [Pseudomonas fulva 12-X] Length = 1155 Score = 619 bits (1595), Expect = e-175, Method: Compositional matrix adjust. Identities = 292/497 (58%), Positives = 366/497 (73%), Gaps = 2/497 (0%) Query: 1 MALMEVGLDDKYRLDTKRIFLSGTQALVRLPMLQRERDRAHGLNTAGFISGYRGSPLGMY 60 M+L E+ LDDKYRL T ++L+GTQAL RLPMLQ++RD A GLNTA FISGYRGSPLG Sbjct: 1 MSLAEIRLDDKYRLATGHLYLTGTQALTRLPMLQKQRDAAAGLNTACFISGYRGSPLGGL 60 Query: 61 DHALWRAKSFLKEHDIAFVPGLNEDLAATAVWGSQQVGMFPGAKVDGVFGIWYGKGPGVD 120 D +LW A+ FL+++ I F PG+NE+L ATAVWGSQQ +FPGA+ DGVF +WYGKGPGVD Sbjct: 61 DKSLWEAREFLQQNAIHFQPGVNEELGATAVWGSQQTNLFPGARYDGVFAMWYGKGPGVD 120 Query: 121 RSLDALKHANSAGTSPNGGVIALAGDDHGCQSSTLAHQSEQVFASALMPVVNPATLQDYL 180 RS D KH NSAG SP+GGV+ LAGDDHGC+SST+AHQSE F +A MPV+NPA +Q+ L Sbjct: 121 RSGDVFKHGNSAGVSPHGGVLVLAGDDHGCKSSTIAHQSEHAFIAASMPVLNPANVQEIL 180 Query: 181 DLGILGFALSRYSGCWVGFKAISETVESSASIVSDPDRIKIIMPDDFEMPLGGLSIRWPD 240 D GI+G+ LSRYSGCWV K I+E V+SSA + DP R+++ +P+DFE+P G+ IRWPD Sbjct: 181 DYGIIGWELSRYSGCWVALKTIAENVDSSAVVDVDPQRVQVTIPNDFELPEDGVHIRWPD 240 Query: 241 PPLEAERRLHGPKMEAVAAFARVNRFDRIVLDSKPARLGIMATGKAYLDLRQALADLGIT 300 PPL E+RL+ K+ A AFA N ++++LDS RLGI+ TGK+YLD+RQAL DLG+ Sbjct: 241 PPLAQEKRLNVYKIYAARAFAHANGLNKVMLDSPNPRLGIITTGKSYLDVRQALDDLGLD 300 Query: 301 DADAQALGLRIYKVALTWPLEARGARAFAEGLQDVLVVEEKRGFIEDQLVRILYNMDAAK 360 +A +GLR+ K+ ++WPLE FAEGL ++LVVEEKR IEDQL LYN K Sbjct: 301 EALCAQIGLRVLKIGMSWPLEPVSVHGFAEGLDEILVVEEKRSIIEDQLTGQLYNWPVGK 360 Query: 361 RPSVVGKRDESGAPLLPSEGELTPTMVAAAVVARLRRLGHRSPLLEQRLAKLEAFDRPAE 420 RP VVG+ DE G LLP+ GELTP M+A + RL + + S ++E RL L+A ++ A Sbjct: 361 RPRVVGEFDEQGQSLLPNLGELTPAMIARVIARRLAPI-YTSEVIEARLKFLDAKEK-AL 418 Query: 421 GVGTAKLQRTPYFCSGCPHNSSTKIPEGSRAMAGIGCHFMASWMDRETSSLIQMGGEGVN 480 + RTP+FCSGCPHNSSTK+PEGSRAM GIGCH+M WM+R T + QMGGEGV Sbjct: 419 AARSYSTVRTPHFCSGCPHNSSTKVPEGSRAMGGIGCHYMTQWMNRSTDTFTQMGGEGVT 478 Query: 481 WAASSKFTGNSHVFQNL 497 W + FT HVFQNL Sbjct: 479 WIGQAPFTDTPHVFQNL 495 >ref|YP_004379565.1| indolepyruvate ferredoxin oxidoreductase [Pseudomonas mendocina NK-01] gb|AEB57813.1| indolepyruvate ferredoxin oxidoreductase [Pseudomonas mendocina NK-01] Length = 1155 Score = 617 bits (1592), Expect = e-174, Method: Compositional matrix adjust. Identities = 294/497 (59%), Positives = 365/497 (73%), Gaps = 2/497 (0%) Query: 1 MALMEVGLDDKYRLDTKRIFLSGTQALVRLPMLQRERDRAHGLNTAGFISGYRGSPLGMY 60 M+L E+ LDDKYRL T ++L+GTQAL RLPMLQ++RD A GLNTA FISGYRGSPLG Sbjct: 1 MSLAEIRLDDKYRLATGHLYLTGTQALTRLPMLQKQRDAAFGLNTACFISGYRGSPLGGL 60 Query: 61 DHALWRAKSFLKEHDIAFVPGLNEDLAATAVWGSQQVGMFPGAKVDGVFGIWYGKGPGVD 120 D +LW A+ +LKE+ I F PG+NE+L ATAVWGSQQ +FPGA+ DGVF +WYGKGPGVD Sbjct: 61 DKSLWDAREYLKENHIHFQPGVNEELGATAVWGSQQANLFPGARYDGVFAMWYGKGPGVD 120 Query: 121 RSLDALKHANSAGTSPNGGVIALAGDDHGCQSSTLAHQSEQVFASALMPVVNPATLQDYL 180 RS D KH NSAG S +GGV+ LAGDDHGC+SST+AHQSE F +A +PV+NPA +Q+ L Sbjct: 121 RSGDVFKHGNSAGVSKHGGVLLLAGDDHGCKSSTIAHQSEHAFIAASIPVLNPANVQEVL 180 Query: 181 DLGILGFALSRYSGCWVGFKAISETVESSASIVSDPDRIKIIMPDDFEMPLGGLSIRWPD 240 D GI+G+ LSRYSGCWV K I+E V+SSA + DP RI++ +P+DF++P G+ IRWPD Sbjct: 181 DYGIIGWELSRYSGCWVALKTIAENVDSSAVVDVDPLRIQVKIPEDFQLPEDGVHIRWPD 240 Query: 241 PPLEAERRLHGPKMEAVAAFARVNRFDRIVLDSKPARLGIMATGKAYLDLRQALADLGIT 300 PPL E+RL+ K+ A AFA N +++ LDS RLGI+ TGK+YLD+RQAL DLG+ Sbjct: 241 PPLAQEKRLNVYKIYAARAFALANNLNQVKLDSPNPRLGIITTGKSYLDVRQALDDLGLD 300 Query: 301 DADAQALGLRIYKVALTWPLEARGARAFAEGLQDVLVVEEKRGFIEDQLVRILYNMDAAK 360 +A +GLR+ KV ++WPLE FAEGL ++LVVEEKR IEDQL LYN K Sbjct: 301 EALCAQVGLRVLKVGMSWPLEPVSVHQFAEGLDEILVVEEKRSIIEDQLTGQLYNWPVGK 360 Query: 361 RPSVVGKRDESGAPLLPSEGELTPTMVAAAVVARLRRLGHRSPLLEQRLAKLEAFDRPAE 420 RP VVG+ DE G LLP+ GELTP M+A + RL + + SP +E+RLA L+A ++ A Sbjct: 361 RPRVVGEFDEEGNSLLPNLGELTPAMIARVIAKRLAPI-YSSPTIEERLAFLDAKEK-AL 418 Query: 421 GVGTAKLQRTPYFCSGCPHNSSTKIPEGSRAMAGIGCHFMASWMDRETSSLIQMGGEGVN 480 K RTP+FCSGCPHNSSTK+PEGSRA+ GIGCH+M WMDR T + QMGGEG Sbjct: 419 AAPKHKTARTPHFCSGCPHNSSTKVPEGSRALGGIGCHYMTQWMDRSTDTFTQMGGEGAT 478 Query: 481 WAASSKFTGNSHVFQNL 497 W + FT HVFQNL Sbjct: 479 WIGQAPFTDTPHVFQNL 495 >ref|YP_236093.1| indolepyruvate ferredoxin oxidoreductase [Pseudomonas syringae pv. syringae B728a] gb|AAY38055.1| Pyruvate decarboxylase:Pyruvate ferredoxin/flavodoxin oxidoreductase [Pseudomonas syringae pv. syringae B728a] Length = 1160 Score = 617 bits (1591), Expect = e-174, Method: Compositional matrix adjust. Identities = 291/497 (58%), Positives = 364/497 (73%), Gaps = 2/497 (0%) Query: 1 MALMEVGLDDKYRLDTKRIFLSGTQALVRLPMLQRERDRAHGLNTAGFISGYRGSPLGMY 60 M+L ++ LDDKYRL T ++L+GTQAL RLPMLQ++RD A GLNTAGFISGYRGSPLG Sbjct: 1 MSLADIRLDDKYRLATGNLYLTGTQALTRLPMLQKQRDEAQGLNTAGFISGYRGSPLGNL 60 Query: 61 DHALWRAKSFLKEHDIAFVPGLNEDLAATAVWGSQQVGMFPGAKVDGVFGIWYGKGPGVD 120 D +LW AK +L+++ I F PG+NE+LAATAVWGSQQV +FP K DGVF +WYGKGPGVD Sbjct: 61 DKSLWDAKDYLRQNAIHFQPGINEELAATAVWGSQQVNLFPHGKYDGVFALWYGKGPGVD 120 Query: 121 RSLDALKHANSAGTSPNGGVIALAGDDHGCQSSTLAHQSEQVFASALMPVVNPATLQDYL 180 R D KH NSAG + NGGV+ LAGDDHGC+SST+AHQSE F ++++PV+NP+ +Q+ L Sbjct: 121 RCGDVFKHGNSAGVAANGGVLILAGDDHGCKSSTIAHQSEHAFIASMIPVLNPSNVQEIL 180 Query: 181 DLGILGFALSRYSGCWVGFKAISETVESSASIVSDPDRIKIIMPDDFEMPLGGLSIRWPD 240 D GI+G+ LSRYSGCWV K I+E V+SSA + DP RIK +PDDF++P GGL IRWPD Sbjct: 181 DYGIIGWELSRYSGCWVAMKTIAENVDSSAVVEVDPLRIKTRIPDDFDLPEGGLHIRWPD 240 Query: 241 PPLEAERRLHGPKMEAVAAFARVNRFDRIVLDSKPARLGIMATGKAYLDLRQALADLGIT 300 PPL E RL+ K+ A AFAR N+ +++V+DS RLGI+ TGK+YLD+RQAL +LGI Sbjct: 241 PPLAQEARLNTYKIYAARAFARANQLNKVVIDSAQPRLGIITTGKSYLDVRQALEELGID 300 Query: 301 DADAQALGLRIYKVALTWPLEARGARAFAEGLQDVLVVEEKRGFIEDQLVRILYNMDAAK 360 + +G+R+ KV ++WPLE FAEGL ++LVVEEKR IEDQL LYN + Sbjct: 301 QELCEKVGIRVLKVGMSWPLEPVSVHDFAEGLDEILVVEEKRSVIEDQLTGQLYNWPVER 360 Query: 361 RPSVVGKRDESGAPLLPSEGELTPTMVAAAVVARLRRLGHRSPLLEQRLAKLEAFDRPAE 420 RP VVG+ DE G LLP+ ELTP M+A + RL + SP +E RL L ++ + Sbjct: 361 RPVVVGEFDEQGRSLLPNLSELTPAMIARVIAKRLAPF-YSSPQIEARLQFLSDKEQALQ 419 Query: 421 GVGTAKLQRTPYFCSGCPHNSSTKIPEGSRAMAGIGCHFMASWMDRETSSLIQMGGEGVN 480 QRTP+FCSGCPHN+STK+PEGSRA+AGIGCH+M WMDRET + QMGGEGV Sbjct: 420 A-PLFNTQRTPHFCSGCPHNTSTKVPEGSRALAGIGCHYMTIWMDRETDTFTQMGGEGVT 478 Query: 481 WAASSKFTGNSHVFQNL 497 W + FT HVFQNL Sbjct: 479 WIGQAPFTETPHVFQNL 495