BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0084.0028.p (335 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_483849.1| hypothetical protein RPB_0227 [Rhodopseudomonas... 317 1e-84 ref|YP_001990641.1| hypothetical protein Rpal_1637 [Rhodopseudom... 306 2e-81 ref|NP_946801.1| hypothetical protein RPA1451 [Rhodopseudomonas ... 306 3e-81 ref|YP_004110358.1| hypothetical protein Rpdx1_4069 [Rhodopseudo... 305 9e-81 ref|NP_769364.1| hypothetical protein blr2724 [Bradyrhizobium ja... 304 2e-80 >ref|YP_483849.1| hypothetical protein RPB_0227 [Rhodopseudomonas palustris HaA2] gb|ABD04938.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2] Length = 314 Score = 317 bits (813), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 154/245 (62%), Positives = 176/245 (71%), Gaps = 1/245 (0%) Query: 42 SAFTTEIVENGDLLVGPWRSPKQMLQAQTYDSHASIHDDATAQKLGFRGGTIEGPTHFSQ 101 +AF T I + GD L GPWR P+QML AQ YDSHASIHDDATAQKLGF+GGTIEGPTHFSQ Sbjct: 4 AAFETPIEDTGDALAGPWRQPRQMLHAQVYDSHASIHDDATAQKLGFKGGTIEGPTHFSQ 63 Query: 102 FAPLCERIWGRAWFMTGCLSAHYRNPVFEGEEVQAQIEKPKPGQTVCTIGMVKRDGTEIL 161 F PLCER+WGR WF +GC+SAHYRN FEGE+VQA ++KP G I MVKRDGTE+L Sbjct: 64 FVPLCERLWGRDWFESGCISAHYRNAAFEGEDVQAIVDKPANGARHAAIRMVKRDGTEVL 123 Query: 162 RGTASIDGDGSETALSHRLGELKPLTDPVILADIKVSMKTPRQAIKMDFDQNMGDLYPFS 221 RG+ S+ D +AL RL ELKPLTD VIL DI V M T Q +KMDF+QNMG+LYPFS Sbjct: 124 RGSVSVGADAPPSALDLRLTELKPLTDAVILRDISVGMTTAPQTVKMDFEQNMGELYPFS 183 Query: 222 LADKLKVITEPSDYYSLEHNPWGRAIIPMEMLSVMSSSARAKIACRSAAPRSGCSPTRRS 281 LADKLKVITEPS YY + +PWGR IIP+EMLSV+ K P G + Sbjct: 184 LADKLKVITEPSPYYQ-DASPWGRPIIPVEMLSVLFQYLSKKDGLPVRGPAVGLFADQEI 242 Query: 282 VFCAG 286 AG Sbjct: 243 RLVAG 247 >ref|YP_001990641.1| hypothetical protein Rpal_1637 [Rhodopseudomonas palustris TIE-1] gb|ACF00166.1| conserved hypothetical protein [Rhodopseudomonas palustris TIE-1] Length = 317 Score = 306 bits (785), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 146/217 (67%), Positives = 170/217 (78%), Gaps = 1/217 (0%) Query: 41 ESAFTTEIVENGDLLVGPWRSPKQMLQAQTYDSHASIHDDATAQKLGFRGGTIEGPTHFS 100 ++AF T I ++GD LVGPWR P+QML AQ YDSHASIHDDATAQKLGF+GGTIEGPTHFS Sbjct: 3 QAAFETPIDDSGDALVGPWRQPRQMLHAQVYDSHASIHDDATAQKLGFKGGTIEGPTHFS 62 Query: 101 QFAPLCERIWGRAWFMTGCLSAHYRNPVFEGEEVQAQIEKPKPGQTVCTIGMVKRDGTEI 160 QFAPLCER+WG+ WF TGC+SAHYRN FEGE+VQA ++KP G TI M KRDGTE+ Sbjct: 63 QFAPLCERLWGKEWFETGCISAHYRNAAFEGEDVQAIVDKPAAGGRQTTIRMAKRDGTEV 122 Query: 161 LRGTASIDGDGSETALSHRLGELKPLTDPVILADIKVSMKTPRQAIKMDFDQNMGDLYPF 220 LRGT S+ D +AL RL ELKPL DPVIL ++ V M T QA +MD +Q MG+LYPF Sbjct: 123 LRGTVSVGRDAPASALDVRLTELKPLADPVILREVSVGMTTKTQAAQMDHEQVMGELYPF 182 Query: 221 SLADKLKVITEPSDYYS-LEHNPWGRAIIPMEMLSVM 256 SL KLKVITEPS YY +PWG+AIIP+EMLSV+ Sbjct: 183 SLDQKLKVITEPSPYYRPGGASPWGKAIIPLEMLSVL 219 >ref|NP_946801.1| hypothetical protein RPA1451 [Rhodopseudomonas palustris CGA009] emb|CAE26894.1| unknown protein [Rhodopseudomonas palustris CGA009] Length = 317 Score = 306 bits (784), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 146/217 (67%), Positives = 169/217 (77%), Gaps = 1/217 (0%) Query: 41 ESAFTTEIVENGDLLVGPWRSPKQMLQAQTYDSHASIHDDATAQKLGFRGGTIEGPTHFS 100 ++AF T I + GD LVGPWR P+QML AQ YDSHASIHDDATAQKLGF+GGTIEGPTHFS Sbjct: 3 QAAFETPIDDTGDALVGPWRQPRQMLHAQVYDSHASIHDDATAQKLGFKGGTIEGPTHFS 62 Query: 101 QFAPLCERIWGRAWFMTGCLSAHYRNPVFEGEEVQAQIEKPKPGQTVCTIGMVKRDGTEI 160 QFAPLCER+WG+ WF TGC+SAHYRN FEGE+VQA ++KP G TI M KRDGTE+ Sbjct: 63 QFAPLCERLWGKEWFETGCISAHYRNAAFEGEDVQAIVDKPAAGGRQTTIRMAKRDGTEV 122 Query: 161 LRGTASIDGDGSETALSHRLGELKPLTDPVILADIKVSMKTPRQAIKMDFDQNMGDLYPF 220 LRGT S+ D +AL RL ELKPL DPVIL ++ V M T QA +MD +Q MG+LYPF Sbjct: 123 LRGTVSVGRDAPASALDVRLTELKPLADPVILREVSVGMTTKTQAAQMDHEQVMGELYPF 182 Query: 221 SLADKLKVITEPSDYYS-LEHNPWGRAIIPMEMLSVM 256 SL KLKVITEPS YY +PWG+AIIP+EMLSV+ Sbjct: 183 SLDQKLKVITEPSPYYRPGGASPWGKAIIPLEMLSVL 219 >ref|YP_004110358.1| hypothetical protein Rpdx1_4069 [Rhodopseudomonas palustris DX-1] gb|ADU45625.1| hypothetical protein Rpdx1_4069 [Rhodopseudomonas palustris DX-1] Length = 317 Score = 305 bits (780), Expect = 9e-81, Method: Compositional matrix adjust. Identities = 148/217 (68%), Positives = 168/217 (77%), Gaps = 1/217 (0%) Query: 41 ESAFTTEIVENGDLLVGPWRSPKQMLQAQTYDSHASIHDDATAQKLGFRGGTIEGPTHFS 100 ++AF T I + G+ L GPWR P+QML AQ YDSHASIHDDATAQKLGF+GGTIEGPTHFS Sbjct: 3 QAAFETPIDDTGEALAGPWRQPRQMLHAQVYDSHASIHDDATAQKLGFKGGTIEGPTHFS 62 Query: 101 QFAPLCERIWGRAWFMTGCLSAHYRNPVFEGEEVQAQIEKPKPGQTVCTIGMVKRDGTEI 160 QFAPLCER+WG+ WF TGC+SAHYRN FEGE+VQA +KP G TI MVKRDGTE+ Sbjct: 63 QFAPLCERLWGKEWFETGCISAHYRNAAFEGEDVQAIADKPVAGARHTTIRMVKRDGTEV 122 Query: 161 LRGTASIDGDGSETALSHRLGELKPLTDPVILADIKVSMKTPRQAIKMDFDQNMGDLYPF 220 LRGTAS+ D +AL RL ELKPL DPVIL DI V M T QA +MD DQ MG+LY F Sbjct: 123 LRGTASVGRDAPASALDVRLTELKPLADPVILRDISVGMTTKTQAAQMDHDQIMGELYSF 182 Query: 221 SLADKLKVITEPSDYYSLEHN-PWGRAIIPMEMLSVM 256 SLA KL+VITEPS YY PWG+AIIP+EMLSV+ Sbjct: 183 SLAQKLEVITEPSPYYRPGGGAPWGKAIIPLEMLSVL 219 >ref|NP_769364.1| hypothetical protein blr2724 [Bradyrhizobium japonicum USDA 110] dbj|BAC47989.1| blr2724 [Bradyrhizobium japonicum USDA 110] Length = 321 Score = 304 bits (778), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 144/219 (65%), Positives = 166/219 (75%) Query: 38 ITVESAFTTEIVENGDLLVGPWRSPKQMLQAQTYDSHASIHDDATAQKLGFRGGTIEGPT 97 I AF TEI E L+GPWR P+QML AQ YD+HASIHDDATAQKLGF+GGTIEGPT Sbjct: 4 IMTADAFDTEITETAKALIGPWRRPRQMLHAQVYDAHASIHDDATAQKLGFKGGTIEGPT 63 Query: 98 HFSQFAPLCERIWGRAWFMTGCLSAHYRNPVFEGEEVQAQIEKPKPGQTVCTIGMVKRDG 157 HFSQFAPL R+WG+AWF +GCLSAHYR+ +EGEEVQA + P PG + C I MVKRDG Sbjct: 64 HFSQFAPLGARLWGQAWFESGCLSAHYRSVCYEGEEVQAILSNPLPGASQCQIQMVKRDG 123 Query: 158 TEILRGTASIDGDGSETALSHRLGELKPLTDPVILADIKVSMKTPRQAIKMDFDQNMGDL 217 TE+LRGTAS+ + TAL RL ELKPL DPVIL ++ V+ + RQ ++M FDQ MGDL Sbjct: 124 TEVLRGTASVGEPHAATALETRLTELKPLADPVILREVTVAQTSKRQPVRMAFDQTMGDL 183 Query: 218 YPFSLADKLKVITEPSDYYSLEHNPWGRAIIPMEMLSVM 256 YPFSL KL VITE S YYS NPW + IIPMEMLSV+ Sbjct: 184 YPFSLRQKLAVITENSPYYSGTDNPWRKPIIPMEMLSVL 222