BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0084.0009.p         (100 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_772379.1| transcriptional regulator [Bradyrhizobium japon...   138   2e-31
ref|YP_001204815.1| TetR family transcriptional regulator [Brady...   137   5e-31
ref|YP_001241297.1| TetR family transcriptional regulator [Brady...   124   3e-27
ref|YP_004106743.1| regulatory protein TetR [Rhodopseudomonas pa...    95   4e-18
ref|YP_004303870.1| transcriptional regulatory protein [Polymorp...    92   3e-17

>ref|NP_772379.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 dbj|BAC51004.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
          110]
          Length = 215

 Score =  138 bits (348), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 69/83 (83%), Positives = 77/83 (92%), Gaps = 1/83 (1%)

Query: 1  MAKSLAKKKTAAAFTAGDDESARGRLLNAATHLFCKNGINATGIDAIIDEAGTAKTTLYK 60
          MAK+ +KK +  A  AG+DESARGRLL+AATHLFCKNGINATGIDAII+EAGTAKTTLYK
Sbjct: 1  MAKTSSKKISPHA-GAGEDESARGRLLSAATHLFCKNGINATGIDAIIEEAGTAKTTLYK 59

Query: 61 LFGSKTNLVHAVLESEGRQWREW 83
          LFGSKTNLV+AVLESEG+QWREW
Sbjct: 60 LFGSKTNLVNAVLESEGKQWREW 82


>ref|YP_001204815.1| TetR family transcriptional regulator [Bradyrhizobium sp. ORS
          278]
 emb|CAL76578.1| putative Transcriptional regulatory protein, TetR family
          [Bradyrhizobium sp. ORS 278]
          Length = 229

 Score =  137 bits (345), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 71/89 (79%), Positives = 72/89 (80%), Gaps = 6/89 (6%)

Query: 1  MAKSLAKKKT------AAAFTAGDDESARGRLLNAATHLFCKNGINATGIDAIIDEAGTA 54
          M KS A K+T      A    AGDDESARGRLL AATHLFCKNGINATGIDAII EAGTA
Sbjct: 5  MGKSAAGKQTGKTQAIARPIAAGDDESARGRLLGAATHLFCKNGINATGIDAIISEAGTA 64

Query: 55 KTTLYKLFGSKTNLVHAVLESEGRQWREW 83
          KTTLYKLFGSKT LV AVLESEGRQWREW
Sbjct: 65 KTTLYKLFGSKTALVTAVLESEGRQWREW 93


>ref|YP_001241297.1| TetR family transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gb|ABQ37391.1| transcriptional regulator, TetR family [Bradyrhizobium sp. BTAi1]
          Length = 257

 Score =  124 bits (312), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 65/89 (73%), Positives = 70/89 (78%), Gaps = 6/89 (6%)

Query: 1   MAKSLAKKKTAA------AFTAGDDESARGRLLNAATHLFCKNGINATGIDAIIDEAGTA 54
           M KS A K+T+          A D++SARGRLL AAT LFCKNGINATGIDAII EAGTA
Sbjct: 32  MGKSAAGKQTSKKPAIVRTIAAVDEDSARGRLLGAATRLFCKNGINATGIDAIISEAGTA 91

Query: 55  KTTLYKLFGSKTNLVHAVLESEGRQWREW 83
           KTTLYKLFGSKT LV AVLESEG+QWREW
Sbjct: 92  KTTLYKLFGSKTALVTAVLESEGKQWREW 120


>ref|YP_004106743.1| regulatory protein TetR [Rhodopseudomonas palustris DX-1]
 gb|ADU42010.1| regulatory protein TetR [Rhodopseudomonas palustris DX-1]
          Length = 202

 Score = 94.7 bits (234), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 42/63 (66%), Positives = 52/63 (82%)

Query: 21 SARGRLLNAATHLFCKNGINATGIDAIIDEAGTAKTTLYKLFGSKTNLVHAVLESEGRQW 80
          S R RL+++A +LFC+ GIN+ G+DAII++AGTAKTTLYKLFGSK  LV AVLE EG+ W
Sbjct: 22 SPRDRLIDSARNLFCRYGINSVGVDAIIEQAGTAKTTLYKLFGSKDGLVEAVLEREGQSW 81

Query: 81 REW 83
          R W
Sbjct: 82 RSW 84


>ref|YP_004303870.1| transcriptional regulatory protein [Polymorphum gilvum
          SL003B-26A1]
 gb|ADZ70568.1| Transcriptional regulatory protein [Polymorphum gilvum
          SL003B-26A1]
          Length = 199

 Score = 92.0 bits (227), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 44/67 (65%), Positives = 51/67 (76%)

Query: 17 GDDESARGRLLNAATHLFCKNGINATGIDAIIDEAGTAKTTLYKLFGSKTNLVHAVLESE 76
          G+   AR RLL AA  LFC+ GINATG+DA++  AGTAKTTLYK FGSK  LV AVLE E
Sbjct: 15 GERAGARERLLLAACDLFCRYGINATGVDAVVAAAGTAKTTLYKAFGSKEGLVEAVLERE 74

Query: 77 GRQWREW 83
          G+ WR+W
Sbjct: 75 GQTWRDW 81