BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0084.0003.p         (148 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_771878.1| hypothetical protein bll5238 [Bradyrhizobium ja...   283   5e-75
ref|YP_002494048.1| hypothetical protein A2cp1_3655 [Anaeromyxob...    43   0.017
ref|ZP_03701998.1| hypothetical protein Flav2ADRAFT_1343 [Flavob...    43   0.017
ref|YP_002135928.1| hypothetical protein AnaeK_3586 [Anaeromyxob...    42   0.035
ref|YP_001347981.1| hypothetical protein PSPA7_2619 [Pseudomonas...    40   0.16 

>ref|NP_771878.1| hypothetical protein bll5238 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC50503.1| bll5238 [Bradyrhizobium japonicum USDA 110]
          Length = 148

 Score =  283 bits (725), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 135/148 (91%), Positives = 141/148 (95%)

Query: 1   MLRTCFSCLFLMVFSLSAMAADGDSKQKVEGIASEYAASFNKQDGAGIAALFATGGIHVN 60
           MLR CFSCLF+ + SLSAMAADGD KQKVE IASEYAASFNKQDGAGIAALFA GGIHVN
Sbjct: 1   MLRACFSCLFVAIVSLSAMAADGDPKQKVEAIASEYAASFNKQDGAGIAALFAAGGIHVN 60

Query: 61  PAGPRSDIAEFYQGAFKAGFDHEEITVDQAWPIGSDMALAIGGYRISGKNQSGAPIETGG 120
           PAGPRSDIAEFYQGAFKAGFDHEEITVDQAWP+GSDMALAIG YR++GKNQ+GAPIETGG
Sbjct: 61  PAGPRSDIAEFYQGAFKAGFDHEEITVDQAWPLGSDMALAIGAYRLAGKNQNGAPIETGG 120

Query: 121 IWTATYVTEGGKLKIRLLSAMPKPPPPK 148
           IWTATYVTEGGKLKIRLLSAMPKPPPPK
Sbjct: 121 IWTATYVTEGGKLKIRLLSAMPKPPPPK 148


>ref|YP_002494048.1| hypothetical protein A2cp1_3655 [Anaeromyxobacter dehalogenans
           2CP-1]
 gb|ACL66982.1| conserved hypothetical protein [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 173

 Score = 42.7 bits (99), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 54/138 (39%), Gaps = 12/138 (8%)

Query: 13  VFSLSAMAADGDSKQKVEGIASEYAASFNKQDGAGIAALFATGGIHVNPAGPRSDIAEFY 72
           V +L A A D      +E    E+ A+F  QD + + ALF   G  +NP G  +   E  
Sbjct: 16  VPALPAFAEDASLPPDLEKTVREFEAAFGAQDASRVGALFDEEGTFINPMGQHAVGREQI 75

Query: 73  QGAFKAGFD------HEEITVDQAWPIGSDMALAIGGYRISGKNQSGAPIETGGIWTATY 126
              F++ F+      H E+ V++   +G    L +      G    GAP      W A  
Sbjct: 76  TAQFRSDFERVLKGVHNELAVERVRLLGDLALLDVRQTLSGGHPPPGAPRP----WVAHA 131

Query: 127 VTEGGKLK--IRLLSAMP 142
           V    +     RLL   P
Sbjct: 132 VVLARRTDGAWRLLDVRP 149


>ref|ZP_03701998.1| hypothetical protein Flav2ADRAFT_1343 [Flavobacteria bacterium
           MS024-2A]
 gb|EEG42035.1| hypothetical protein Flav2ADRAFT_1343 [Flavobacteria bacterium
           MS024-2A]
          Length = 296

 Score = 42.7 bits (99), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 35/164 (21%), Positives = 69/164 (42%), Gaps = 20/164 (12%)

Query: 2   LRTCFSCLFLMVFSLS--------AMAADGDSKQKVEGIASEYAASFNKQDGAGIAALFA 53
           ++  F  L  ++F+ S         + +  D+K  +E     ++ ++N+ +   I+  F 
Sbjct: 1   MKKSFLILLSVLFTYSCSQKKQKNEIVSKPDAKTLMEESMQRFSTAWNQGNSIEISKEFT 60

Query: 54  TGGIHV--NPAGP---RSDIAEFYQGAFKAGFD----HEEITVDQAWPIGSDMALAIGGY 104
              + +  NP+ P   +  I + ++  F  G D    H E+TV +   + SD+ L  G +
Sbjct: 61  KDAVRIISNPSSPIKGQEAILKVFESTFSDGSDFKNSHMEVTVMETRSVSSDIYLGAGKF 120

Query: 105 RISGKNQSGAPIETGGIWTATYVTEGGKLKIRLLSAMPKPPPPK 148
           +I  K      I   G W   +    G++K  + SA  K    +
Sbjct: 121 KILNKEN---EILEQGKWGNVFKYNNGQIKFLMESAHRKSKETQ 161


>ref|YP_002135928.1| hypothetical protein AnaeK_3586 [Anaeromyxobacter sp. K]
 gb|ACG74799.1| conserved hypothetical protein [Anaeromyxobacter sp. K]
          Length = 174

 Score = 41.6 bits (96), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 45/109 (41%), Gaps = 6/109 (5%)

Query: 13  VFSLSAMAADGDSKQKVEGIASEYAASFNKQDGAGIAALFATGGIHVNPAGPRSDIAEFY 72
           V +L A A D      +E    E+ A+F  QD + + ALF   G  +NP G R+   E  
Sbjct: 16  VPALPAFAEDASLPPDLEKTVREFEAAFGAQDASRVGALFDEEGTFINPMGQRAVGREQI 75

Query: 73  QGAFKAGFD------HEEITVDQAWPIGSDMALAIGGYRISGKNQSGAP 115
              F+  F+      H  + V++   +G    L +      G    GAP
Sbjct: 76  TAQFRTDFERVLKGVHNALAVERVRLLGDLALLDVRQTLSGGHPPPGAP 124


>ref|YP_001347981.1| hypothetical protein PSPA7_2619 [Pseudomonas aeruginosa PA7]
 gb|ABR81728.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7]
          Length = 148

 Score = 39.7 bits (91), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 58/126 (46%), Gaps = 12/126 (9%)

Query: 8   CLFLMVFSLSAMAADG-DSKQKVEGIASEYAASFNKQDGAGIAALFATGGIHVNPAGPR- 65
           C   +V  + A A D   S ++V  +   Y   FN  D  G+A+L+      V+  G R 
Sbjct: 7   CALFLVAPICAWAQDPPRSPEEVPQVLERY---FNAGDLDGLASLYGENSAFVSAPGTRV 63

Query: 66  ---SDIAEFYQGAFKAGFDHEEITVDQAWPIGSDMALAIGGYRISGKNQSGAPIETGGIW 122
              + I    Q  F A       +V Q +  G DMAL +G +RI G+ + G+P++  G  
Sbjct: 64  LGTARIRSALQ-RFMATGAPIRFSVRQVYRAG-DMALILGDWRIEGEGRDGSPVDMRG-- 119

Query: 123 TATYVT 128
           TAT V 
Sbjct: 120 TATDVV 125