BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0082.0068.p (257 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001237514.1| hypothetical protein BBta_1375 [Bradyrhizobi... 238 8e-61 ref|YP_002218666.1| TPR repeat-containing protein [Acidithiobaci... 75 1e-11 ref|YP_004783029.1| hypothetical protein Acife_0495 [Acidithioba... 74 2e-11 ref|ZP_03131312.1| TPR repeat-containing protein [Chthoniobacter... 69 6e-10 ref|ZP_01857383.1| TPR repeat [Planctomyces maris DSM 8797] >gi|... 68 2e-09 >ref|YP_001237514.1| hypothetical protein BBta_1375 [Bradyrhizobium sp. BTAi1] gb|ABQ33608.1| hypothetical protein BBta_1375 [Bradyrhizobium sp. BTAi1] Length = 282 Score = 238 bits (606), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 130/256 (50%), Positives = 171/256 (66%) Query: 1 VVALQMGQVVEAERLAAEVLKANRTDVGAASILARALMIQNRNEEAIAPLERAVRRVEDP 60 + AL+ Q AE++AA +L+ +TD A + A AL+ Q R EA+APLE+A+ R DP Sbjct: 17 IQALRGRQFARAEQIAASILRTAKTDRAALLVHAHALLGQQRASEAVAPLEKAILRGSDP 76 Query: 61 GLETLLGAALGGAGRGSEAIDVLRRTTARRPPYLPAFQALAGQLHSAGRIDEAVAVIESA 120 LETLLGAAL + RG++ I LR+T ARRPP+LPAFQ LAG+L + + EA+ VIE A Sbjct: 77 ELETLLGAALCESRRGADGIAQLRKTAARRPPFLPAFQELAGRLAKSAELTEAIKVIEDA 136 Query: 121 LALAPGSLEFQLLLAQLLPQRNERGRARAILEKLRIAAPGHPDVLAALARVLLLDGEYAA 180 LALAP S++ +L L +L Q N+R RARA L R AAPG PD+L LA V LDG+YA Sbjct: 137 LALAPDSVDLKLDLGRLCLQANDRARARANLVAAREAAPGRPDILVELAWVQFLDGDYAE 196 Query: 181 AADLYRQVMAQRPDDPLMRLSFSASLLEMGDRAAGEANLRLALRGRPQMIGRTTAALIMS 240 AA Y+ + RP+D R + + L+EMGDRA EA LR +RGRP ++ R +++S Sbjct: 197 AAGTYKHALGLRPEDTQTRANLAMCLMEMGDRAGAEAALRTVVRGRPHLLSRAAYTMVVS 256 Query: 241 SHGRFFFRRSAFAEFL 256 SHGRFFFR S A+FL Sbjct: 257 SHGRFFFRPSDAAKFL 272 >ref|YP_002218666.1| TPR repeat-containing protein [Acidithiobacillus ferrooxidans ATCC 53993] gb|ACH82459.1| TPR repeat-containing protein [Acidithiobacillus ferrooxidans ATCC 53993] Length = 505 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 58/205 (28%), Positives = 92/205 (44%), Gaps = 1/205 (0%) Query: 7 GQVVEAERLAAEVLKANRTDVGAASILARALMIQNRNEEAIAPLERAVRRVEDPGLET-L 65 G++ +AER+ ++ L N +V A L+ L+ NR EA + + + + D + Sbjct: 167 GKLSDAERVLSDALNINENNVAALHNLSVLLLYLNRYSEAEHAIMKVLSLMPDNAESIFI 226 Query: 66 LGAALGGAGRGSEAIDVLRRTTARRPPYLPAFQALAGQLHSAGRIDEAVAVIESALALAP 125 LGA G R SE R+ + +P Y A L L GR+DEA+ AL + P Sbjct: 227 LGAISVGKKRLSEGEIAFRKALSIKPAYPEALMNLGAILSDQGRVDEAIGTFRKALTIKP 286 Query: 126 GSLEFQLLLAQLLPQRNERGRARAILEKLRIAAPGHPDVLAALARVLLLDGEYAAAADLY 185 LE + L L +++ A +L K P +P+ L L L +G + L Sbjct: 287 DYLEALMRLGVALGRQDRMDEAETVLRKALAIKPDYPEALMNLGVTLGHEGRWEETETLL 346 Query: 186 RQVMAQRPDDPLMRLSFSASLLEMG 210 RQ + +PD P ++ A+L G Sbjct: 347 RQALTIKPDYPEALMNLGAALSRQG 371 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/103 (33%), Positives = 50/103 (48%) Query: 66 LGAALGGAGRGSEAIDVLRRTTARRPPYLPAFQALAGQLHSAGRIDEAVAVIESALALAP 125 LGA L GR +EA +LR+ A +P + A L L GR+DEA ++ AL + P Sbjct: 398 LGATLNKQGRWNEAETILRQAVAIKPEHADALINLGAVLSKQGRLDEAETILRQALTIMP 457 Query: 126 GSLEFQLLLAQLLPQRNERGRARAILEKLRIAAPGHPDVLAAL 168 + + L +L QR A+ ++ A P HP+ L L Sbjct: 458 DQADALVNLGVILRQRGCPEEAKTAFQQALTANPNHPEALVNL 500 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 54/172 (31%), Positives = 73/172 (42%), Gaps = 4/172 (2%) Query: 33 LARALMIQNRNEEAIAPLERAVRRVED-PGLETLLGAALGGAGRGSEAIDVLRRTTARRP 91 L AL Q+R +EA L +A+ D P LG LG GR E +LR+ +P Sbjct: 295 LGVALGRQDRMDEAETVLRKALAIKPDYPEALMNLGVTLGHEGRWEETETLLRQALTIKP 354 Query: 92 PYLPAFQALAGQLHSAGR-IDEAVAVIESALALAPGSLEFQLLLAQLLPQRNERGRARAI 150 Y A L L GR +DEA ++ LA+ P + + L L ++ A I Sbjct: 355 DYPEALMNLGAALSRQGRCLDEAENILRRTLAIQPDHPDALVNLGATLNKQGRWNEAETI 414 Query: 151 LEKLRIAAPGHPDVLAALARVLLLDGEYAAAADLYRQVMAQRPD--DPLMRL 200 L + P H D L L VL G A + RQ + PD D L+ L Sbjct: 415 LRQAVAIKPEHADALINLGAVLSKQGRLDEAETILRQALTIMPDQADALVNL 466 >ref|YP_004783029.1| hypothetical protein Acife_0495 [Acidithiobacillus ferrivorans SS3] gb|AEM46703.1| Tetratricopeptide TPR_2 repeat-containing protein [Acidithiobacillus ferrivorans SS3] Length = 545 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 69/228 (30%), Positives = 104/228 (45%), Gaps = 12/228 (5%) Query: 7 GQVVEAERLAAEVLKANRTDVGAASILARALMIQNRNEEAIAPLERAVRRV-----EDPG 61 G +++AER+ + L N +V A L+ L+ QNR EA E A+R+V ++ Sbjct: 207 GNLLDAERVLYDALNINENNVAALHNLSVLLLYQNRYSEA----EDAIRKVLSLMPDNAE 262 Query: 62 LETLLGAALGGAGRGSEAIDVLRRTTARRPPYLPAFQALAGQLHSAGRIDEAVAVIESAL 121 +LGA G SEA R+ + +P Y A L L GR+DEA+ AL Sbjct: 263 SIFVLGAISVGKKCLSEAEMAFRKALSIKPAYPEALMNLGVMLSDQGRMDEAIGTFRKAL 322 Query: 122 ALAPGSLEFQLLLAQLLPQRNERGRARAILEKLRIAAPGHPDVLAALARVLLLDGEYAAA 181 + PG E + L L + A + L K +P+ + L +L +G + Sbjct: 323 IIKPGYREALMRLGVALGYQGRMDEAESTLRKALAIKSDYPEAIMNLGVILGHEGRWEET 382 Query: 182 ADLYRQVMAQRPDDPLMRLSFSASLLEMGDRAAGEAN--LRLALRGRP 227 L RQ +A +PD P ++ A+L + G R EA LR AL +P Sbjct: 383 ETLLRQALAIKPDYPEALMNLGAALSKQG-RCLDEAETILRQALAIQP 429 Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 61/198 (30%), Positives = 84/198 (42%), Gaps = 2/198 (1%) Query: 33 LARALMIQNRNEEAIAPLERAVRRVED-PGLETLLGAALGGAGRGSEAIDVLRRTTARRP 91 L AL Q R +EA + L +A+ D P LG LG GR E +LR+ A +P Sbjct: 335 LGVALGYQGRMDEAESTLRKALAIKSDYPEAIMNLGVILGHEGRWEETETLLRQALAIKP 394 Query: 92 PYLPAFQALAGQLHSAGR-IDEAVAVIESALALAPGSLEFQLLLAQLLPQRNERGRARAI 150 Y A L L GR +DEA ++ ALA+ P + + L L ++ A I Sbjct: 395 DYPEALMNLGAALSKQGRCLDEAETILRQALAIQPDHADALVNLGATLNKQGRWDEAETI 454 Query: 151 LEKLRIAAPGHPDVLAALARVLLLDGEYAAAADLYRQVMAQRPDDPLMRLSFSASLLEMG 210 L + P H D L L VL G A + RQ +A +PD ++ L + G Sbjct: 455 LRQAVAIKPEHADALINLGAVLSKQGRLDEAETILRQAIAIKPDQVDALVNLGVILRQRG 514 Query: 211 DRAAGEANLRLALRGRPQ 228 EA + AL P Sbjct: 515 CLEEAEAAFQQALTANPN 532 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 61/195 (31%), Positives = 84/195 (43%), Gaps = 6/195 (3%) Query: 40 QNRNEEAIAPLERAVRRVEDPGL-ETL--LGAALGGAGRGSEAIDVLRRTTARRPPYLPA 96 Q R +EAI +A+ + PG E L LG ALG GR EA LR+ A + Y A Sbjct: 308 QGRMDEAIGTFRKAL--IIKPGYREALMRLGVALGYQGRMDEAESTLRKALAIKSDYPEA 365 Query: 97 FQALAGQLHSAGRIDEAVAVIESALALAPGSLEFQLLL-AQLLPQRNERGRARAILEKLR 155 L L GR +E ++ ALA+ P E + L A L Q A IL + Sbjct: 366 IMNLGVILGHEGRWEETETLLRQALAIKPDYPEALMNLGAALSKQGRCLDEAETILRQAL 425 Query: 156 IAAPGHPDVLAALARVLLLDGEYAAAADLYRQVMAQRPDDPLMRLSFSASLLEMGDRAAG 215 P H D L L L G + A + RQ +A +P+ ++ A L + G Sbjct: 426 AIQPDHADALVNLGATLNKQGRWDEAETILRQAVAIKPEHADALINLGAVLSKQGRLDEA 485 Query: 216 EANLRLALRGRPQMI 230 E LR A+ +P + Sbjct: 486 ETILRQAIAIKPDQV 500 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 68/155 (43%), Gaps = 16/155 (10%) Query: 14 RLAAEVLKANRTDVGAASILARALMIQNRNEEAIAPLERAVRRVEDPGLETLLGAALGGA 73 L A + K R A +IL +AL IQ + +A+ L GA L Sbjct: 402 NLGAALSKQGRCLDEAETILRQALAIQPDHADALVNL----------------GATLNKQ 445 Query: 74 GRGSEAIDVLRRTTARRPPYLPAFQALAGQLHSAGRIDEAVAVIESALALAPGSLEFQLL 133 GR EA +LR+ A +P + A L L GR+DEA ++ A+A+ P ++ + Sbjct: 446 GRWDEAETILRQAVAIKPEHADALINLGAVLSKQGRLDEAETILRQAIAIKPDQVDALVN 505 Query: 134 LAQLLPQRNERGRARAILEKLRIAAPGHPDVLAAL 168 L +L QR A A ++ A P H + L L Sbjct: 506 LGVILRQRGCLEEAEAAFQQALTANPNHSEALVNL 540 >ref|ZP_03131312.1| TPR repeat-containing protein [Chthoniobacter flavus Ellin428] gb|EDY18048.1| TPR repeat-containing protein [Chthoniobacter flavus Ellin428] Length = 672 Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 73/246 (29%), Positives = 97/246 (39%), Gaps = 18/246 (7%) Query: 1 VVALQMGQVVEAERLAAEVLKANRTDVGAASILARALMIQNRNEEAIAPLERAVR-RVED 59 V+A Q+GQ A L E ++ N D A L A + R EEAI RA+ + Sbjct: 45 VIAHQVGQHEGAIELIGEAVQLNPNDAAALCNLGEAYRVSGRLEEAIVAYRRALCIQPGQ 104 Query: 60 PGLETLLGAALGGAGRGSEAIDVLRRTTARRPPYLPAFQALAGQLHSAGRIDEAVAVIES 119 P + LG L GR EAID RR T RP Y+ A LA L GR +EA+A Sbjct: 105 PEACSNLGNVLRSVGRMDEAIDACRRATQLRPGYVEAHLNLANALSEHGRSEEALAEYRC 164 Query: 120 ALALAPGSLEFQLLLAQLLPQRNERGRARAILEKLRIAAPGHPDVLAALARVLLLDGEYA 179 AL + P E L A A + P H + L VL G + Sbjct: 165 ALEIDPHHAEAWNSYGSALVGMQRLVEAEAAFRQAIQWQPQHAGAWSNLGGVLAECGRHD 224 Query: 180 AAADLYRQVMAQRPDDPLMRLSFSASLLEMGDRAAGEANLRLALRGRPQMIGRTTAALIM 239 A YR+ + P D A+ ++NL L+ P + T A Sbjct: 225 EAVAAYRRALEINPAD-----------------ASVQSNLICTLQFHPTVEWETIAEERR 267 Query: 240 SSHGRF 245 + +GRF Sbjct: 268 AWNGRF 273 Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust. Identities = 44/170 (25%), Positives = 66/170 (38%), Gaps = 6/170 (3%) Query: 65 LLGAALGGAGRGSEAIDVLRRTTARRPPYLPAFQALAGQLHSAGRIDEAVAVIESALALA 124 LLG G+ AI+++ P A L +GR++EA+ AL + Sbjct: 42 LLGVIAHQVGQHEGAIELIGEAVQLNPNDAAALCNLGEAYRVSGRLEEAIVAYRRALCIQ 101 Query: 125 PGSLEFQLLLAQLLPQRNERGRARAILEKLRIAA---PGHPDVLAALARVLLLDGEYAAA 181 PG E L +L GR ++ R A PG+ + LA L G A Sbjct: 102 PGQPEACSNLGNVL---RSVGRMDEAIDACRRATQLRPGYVEAHLNLANALSEHGRSEEA 158 Query: 182 ADLYRQVMAQRPDDPLMRLSFSASLLEMGDRAAGEANLRLALRGRPQMIG 231 YR + P S+ ++L+ M EA R A++ +PQ G Sbjct: 159 LAEYRCALEIDPHHAEAWNSYGSALVGMQRLVEAEAAFRQAIQWQPQHAG 208 >ref|ZP_01857383.1| TPR repeat [Planctomyces maris DSM 8797] gb|EDL56725.1| TPR repeat [Planctomyces maris DSM 8797] Length = 591 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 59/208 (28%), Positives = 90/208 (43%), Gaps = 1/208 (0%) Query: 5 QMGQVVEAERLAAEVLKANRTDVGAASILARALMIQNRNEEAIAPLERAVR-RVEDPGLE 63 Q G++ +A + VL N A L + + +++I + V+ + E P + Sbjct: 16 QAGELDQAATIYQHVLDTNARQWEARYYLGTLQLQRGDLDQSIRTFLQVVQLQPELPDVH 75 Query: 64 TLLGAALGGAGRGSEAIDVLRRTTARRPPYLPAFQALAGQLHSAGRIDEAVAVIESALAL 123 LG A AG+ EA + P Y A+ L S G EAV + A L Sbjct: 76 NNLGVAYHAAGKWQEAGQSFEQAIRLNPHYERAYFNLGSLFESRGVFSEAVKCYQKAHDL 135 Query: 124 APGSLEFQLLLAQLLPQRNERGRARAILEKLRIAAPGHPDVLAALARVLLLDGEYAAAAD 183 +PG+L+ LA L E RA I +L +A PG D+ LA VL+L +Y A Sbjct: 136 SPGNLDTHQKLADALKSAGEWARAEDIYRELLVAKPGDFDLSMKLAYVLVLQRQYQEAIM 195 Query: 184 LYRQVMAQRPDDPLMRLSFSASLLEMGD 211 LY ++ PD + +S S +G+ Sbjct: 196 LYESMLKISPDHYQILVSLSYVYEAVGN 223 Score = 43.5 bits (101), Expect = 0.034, Method: Compositional matrix adjust. Identities = 54/232 (23%), Positives = 89/232 (38%), Gaps = 5/232 (2%) Query: 1 VVALQMGQVVEAERLAAEVLKANRTDVGAASILARALMIQNRNEEAIAPLERAVRRVEDP 60 + LQ G + ++ R +V++ + L A + +EA E+A+R +P Sbjct: 46 TLQLQRGDLDQSIRTFLQVVQLQPELPDVHNNLGVAYHAAGKWQEAGQSFEQAIRL--NP 103 Query: 61 GLETL---LGAALGGAGRGSEAIDVLRRTTARRPPYLPAFQALAGQLHSAGRIDEAVAVI 117 E LG+ G SEA+ ++ P L Q LA L SAG A + Sbjct: 104 HYERAYFNLGSLFESRGVFSEAVKCYQKAHDLSPGNLDTHQKLADALKSAGEWARAEDIY 163 Query: 118 ESALALAPGSLEFQLLLAQLLPQRNERGRARAILEKLRIAAPGHPDVLAALARVLLLDGE 177 L PG + + LA +L + + A + E + +P H +L +L+ V G Sbjct: 164 RELLVAKPGDFDLSMKLAYVLVLQRQYQEAIMLYESMLKISPDHYQILVSLSYVYEAVGN 223 Query: 178 YAAAADLYRQVMAQRPDDPLMRLSFSASLLEMGDRAAGEANLRLALRGRPQM 229 AA + + + P P + + D N R A+ RP Sbjct: 224 IDAAIEAAERSIQVAPTQPEGYNNLGNAFKLKHDLENASENFRKAISLRPDF 275