BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0082.0061.p (203 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_773178.1| transcriptional regulator [Bradyrhizobium japon... 318 4e-85 ref|YP_001103150.1| TetR family transcriptional regulator [Sacch... 98 9e-19 ref|YP_480225.1| TetR family transcriptional regulator [Frankia ... 94 9e-18 ref|ZP_06851929.1| TetR family transcriptional regulator [Mycoba... 94 2e-17 ref|ZP_02379504.1| transcriptional regulator, TetR family protei... 92 3e-17 >ref|NP_773178.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC51803.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 203 Score = 318 bits (814), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 167/203 (82%), Positives = 183/203 (90%) Query: 1 MSRVRTRPTRDDTCEKLFEAAARVFEEQGIGGASIEAIAAAAGFTRGAFYSNFKSKDELI 60 MSRVRTRPTRDDT +KLFEAAARVFEE GIGGASIEAIAAAAGFTRGAFYSNF SKDELI Sbjct: 1 MSRVRTRPTRDDTRDKLFEAAARVFEEDGIGGASIEAIAAAAGFTRGAFYSNFNSKDELI 60 Query: 61 FAMLEDHVEQSIRRNLDLLARHRNLADFLEALRTMDRSRQDPLGRSPLLHMEMILFVARA 120 AMLEDHVEQSIRRN+D+LA+H NL DF+ ALRTMDRSRQDPLGRSPLLHMEMIL+VARA Sbjct: 61 IAMLEDHVEQSIRRNMDILAQHDNLDDFIAALRTMDRSRQDPLGRSPLLHMEMILYVARA 120 Query: 121 EKRRPELAKRLRARRKLIADIVTTAQKNSGRNGRLDPDWTGAIVLALEDGFRLHRLIDPE 180 EKRRPELAKRLRARRKLIADIV K++G+N L+P W ++VLALEDGFRLHRLIDPE Sbjct: 121 EKRRPELAKRLRARRKLIADIVEATLKSNGKNNALNPPWMASVVLALEDGFRLHRLIDPE 180 Query: 181 TTPADSCLRAITDLQRAIGVSSA 203 TTPADS LRAITDL+R G+++ Sbjct: 181 TTPADSFLRAITDLRRRTGLAAG 203 >ref|YP_001103150.1| TetR family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] ref|ZP_06562490.1| TetR family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] emb|CAM00225.1| transcriptional regulator, TetR family [Saccharopolyspora erythraea NRRL 2338] Length = 206 Score = 97.8 bits (242), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 66/201 (32%), Positives = 100/201 (49%), Gaps = 4/201 (1%) Query: 3 RVRTRPTRDDTCEKLFEAAARVFEEQGIGGASIEAIAAAAGFTRGAFYSNFKSKDELIFA 62 R+ +R +T +L E+AA +F E+G+ GAS+E IA AG++RGAFY NF K EL+ Sbjct: 5 RLTREESRQETRARLLESAAELFAERGVNGASVEQIAERAGYSRGAFYGNFADKHELVVE 64 Query: 63 MLEDHVEQSIRRNLDLLARHRNLADFLEALRTMDRSRQDPLGRSPLLHMEMILFVARAEK 122 +L Q R LD + + ALR + R + L L E++L+ R Sbjct: 65 LL----RQRTLRELDEVTAIAREPEPFAALREWHKERAEHLVGWLSLRAELLLYALRTPS 120 Query: 123 RRPELAKRLRARRKLIADIVTTAQKNSGRNGRLDPDWTGAIVLALEDGFRLHRLIDPETT 182 RP++A+R R R A + + G DP + IV ALEDG + RL+ P+ Sbjct: 121 FRPQMAERERIARDAHAGSIEATFASLGVEPPADPAFLALIVHALEDGLLVQRLLSPDEV 180 Query: 183 PADSCLRAITDLQRAIGVSSA 203 + + A+ L R+ + A Sbjct: 181 SDEVVVDAVELLMRSWSAAGA 201 >ref|YP_480225.1| TetR family transcriptional regulator [Frankia sp. CcI3] gb|ABD10496.1| transcriptional regulator, TetR family [Frankia sp. CcI3] Length = 209 Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 65/192 (33%), Positives = 98/192 (51%), Gaps = 6/192 (3%) Query: 9 TRDDTCEKLFEAAARVFEEQGIGGASIEAIAAAAGFTRGAFYSNFKSKDELIFAMLEDHV 68 +R+ T EKL +AA +F E+G+ G S+E I AGFTRGAFY NF K EL+ A+LE Sbjct: 6 SRELTREKLLRSAAELFAERGLAGTSVEQIVERAGFTRGAFYGNFDGKHELVLALLEKRT 65 Query: 69 EQSIRRNLDLLARHRNLADF---LEALRTMDRSRQDPLGRSPLLHMEMILFVARAEKRRP 125 E+ + +L A R+ F +E R R R L +L E+ L+ R P Sbjct: 66 ERELE---ELRALGRDAGSFEGMVEQFRAWHRERDRHLASWLVLRTELWLYGLRNPGVLP 122 Query: 126 ELAKRLRARRKLIADIVTTAQKNSGRNGRLDPDWTGAIVLALEDGFRLHRLIDPETTPAD 185 L R R +IA+ + + + + IV AL+DG + R++ PE++P D Sbjct: 123 TLTDREARTRTIIAEALARDFTSRDASPPAPVEVLALIVHALDDGLAIQRVLSPESSPDD 182 Query: 186 SCLRAITDLQRA 197 + + A+ L R+ Sbjct: 183 AAVDAVDLLLRS 194 >ref|ZP_06851929.1| TetR family transcriptional regulator [Mycobacterium parascrofulaceum ATCC BAA-614] gb|EFG74780.1| TetR family transcriptional regulator [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 208 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 71/204 (34%), Positives = 107/204 (52%), Gaps = 10/204 (4%) Query: 4 VRTRPTRDDTCEKLFEAAARVFEEQGIGGASIEAIAAAAGFTRGAFYSNFKSKDELIFAM 63 +RTRPTR + +++ +AA++VF +G GA+I+AI AAGFT+GA YSNF+SKDEL A+ Sbjct: 11 LRTRPTRGEVRDRILDAASKVFAAEGFAGATIDAIGQAAGFTKGAVYSNFESKDELFLAL 70 Query: 64 LEDHVEQSIRRNLDLLARHRNLADFLEALRTMDRSRQDPLGRSPLLHMEMILFVARAEKR 123 L+ E +R +A R+ D A R + RS D + ++ ++ + RA+ R Sbjct: 71 LDREFE--LRGEQIAIALDRSDGDTAAAAREVSRSVLDSVRDHSDYYVLLVEYWLRAQ-R 127 Query: 124 RPELAKRLRARRKLIA----DIVTTAQKNSGRNGRLDPDWTGAIVLALEDGFRLHRLIDP 179 P+L RL RR+ A IV + G D +V+ L G + ++ P Sbjct: 128 DPQLRDRLIERRRAAAGQALHIVESTDTVPGDRRLTD---IAQLVVTLNLGVAMEEVLRP 184 Query: 180 ETTPADSCLRAITDLQRAIGVSSA 203 T D + IT L +I VS A Sbjct: 185 GTINPDLLAQLITALLESIPVSGA 208 >ref|ZP_02379504.1| transcriptional regulator, TetR family protein [Burkholderia ubonensis Bu] Length = 201 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 66/179 (36%), Positives = 96/179 (53%), Gaps = 3/179 (1%) Query: 9 TRDDTCEKLFEAAARVFEEQGIGGASIEAIAAAAGFTRGAFYSNFKSKDELIFAMLE-DH 67 ++D T E+L AA +F E+G AS+E IAAAAGFTRGAFYSNF+SK EL+F +LE DH Sbjct: 6 SKDQTRERLLSAAQSIFLEKGFVAASVEDIAAAAGFTRGAFYSNFRSKAELLFELLERDH 65 Query: 68 VEQSIRRNLDLLARHRNLADFLEALRTMDRSRQDPLGRSPLLHMEMILFVARAEKRRPEL 127 S++ L + + +EA R R LL +E L AR K R Sbjct: 66 A--SVQAELRQIFEGGGTREQMEATALAYYRRMHIDDRCHLLWVEAKLQAARDAKFRVRF 123 Query: 128 AKRLRARRKLIADIVTTAQKNSGRNGRLDPDWTGAIVLALEDGFRLHRLIDPETTPADS 186 + L+ R +ADI+ ++SG RL + +++L DG + + DP+ A++ Sbjct: 124 NQFLQESRTRMADIIRAFSEHSGTPLRLPAETLALGLMSLCDGVQSYYTADPQHVSAEA 182