BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0082.0057.p         (977 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001207954.1| putative adenylate cyclase [Bradyrhizobium s...   925   0.0  
ref|ZP_02380857.1| adenylate/guanylate cyclase [Burkholderia ubo...   404   e-110
ref|YP_841036.1| ATP synthase beta subunit/transription terminat...   401   e-109
ref|YP_002007959.1| adenylate cyclase; with tetratricopeptide tp...   398   e-108
ref|YP_004681716.1| ATP synthase beta subunit/transription termi...   396   e-107

>ref|YP_001207954.1| putative adenylate cyclase [Bradyrhizobium sp. ORS 278]
 emb|CAL79739.1| putative Adenylate cyclase [Bradyrhizobium sp. ORS 278]
          Length = 1076

 Score =  925 bits (2391), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 507/985 (51%), Positives = 656/985 (66%), Gaps = 25/985 (2%)

Query: 1    MRRLQPVLDLMNEAVHRYGGVVNKAQGDGVMAMFGAPQPHEDHAVRGCLAALAMQDDVKR 60
            M+RL PVL+LM EAVHR+ GVVNK QGDGVMA+FGAP PHEDHAVRGCL ALAMQD + R
Sbjct: 101  MQRLDPVLNLMKEAVHRFDGVVNKTQGDGVMALFGAPVPHEDHAVRGCLGALAMQDSIGR 160

Query: 61   LHDVDLQIRVGVHTGEVVFQAIEHGIYQTYDAAGANVHLASRLEHLAEPGTILVSRETYA 120
            L D  LQ+RVG+HTGEV+ Q +E+ +YQTYDAAGANVHLA+RLEH+AEPGTILVS+ETY 
Sbjct: 161  LGDPHLQVRVGLHTGEVIVQVVENSMYQTYDAAGANVHLANRLEHMAEPGTILVSKETYT 220

Query: 121  VAKQFVEVEALGEQAIRGLAAPVEVLRLRGLQHAPSSGVFRTGRRLSPLTGRADEFATLT 180
             A+QFVE E LG   +RG+A+PV + +L G  +AP+S VFR+G+RL PL GR  +F  L 
Sbjct: 221  GARQFVEAEPLGTHTVRGIASPVSIYKLIGRLNAPASDVFRSGQRLLPLIGRKAQFDVLE 280

Query: 181  AELENTRKGDGRVIGVVGEAGIGKSRLCFEFAESCRSKGIRVFEARVLAHGRATPFQPVL 240
             EL+N     G V+G+VGEAGIGKSRLCFEFAE CR +GIRV+EARVLAHGR TPFQPVL
Sbjct: 281  RELDNVLAARGAVVGIVGEAGIGKSRLCFEFAEHCRRQGIRVYEARVLAHGRTTPFQPVL 340

Query: 241  ALLRDIFGLRIKEEPPDVSRRRVFDRLAAMPVSDHLAPVLLEFLGLADPHRPAPKLDPKA 300
             LLRD FG+R KE P +VSR+RV ++L A+ + D    +LL+F+GLADP RPA +LDP  
Sbjct: 341  ELLRDFFGIRPKE-PVEVSRQRVVEKLEAIGLPDTALVLLLDFMGLADPARPALRLDPGV 399

Query: 301  RKAQLLDFVGELVRAAPRDNVTVVLIDDLHWIDPASEEFVEALADAVVGTTTMLLVNFRA 360
             K++LL+    L RAAP D  +V++I+DLHWID ASEEFVEALA+A +GT T+L+VN+R 
Sbjct: 400  FKSRLLNVFRTLFRAAPADGGSVIMIEDLHWIDEASEEFVEALAEATIGTKTLLVVNYRP 459

Query: 361  GLTAPLMQRSHYRQINMAPLGPAEAQSILRDHFGTDPSLALLSRNIVERAHGNPFFLEEL 420
            G  A  MQR+ + ++++ PL  AEA+ +LR  FG DPSL  L+ +IVERA GNPFFLEEL
Sbjct: 460  GFAASFMQRAAFHELHIVPLASAEARELLRGVFGDDPSLQALAGDIVERAQGNPFFLEEL 519

Query: 421  MSALVERGDFEGEKGAYRLKGGIDTIPLPTTVQAVVAARIDRLDEHAKRALEVASVAGRE 480
             SA+ E  DFEGE+GAYRLKGGI  IPLP TV AVVAARIDRL E AK  LE A+V GR 
Sbjct: 520  ASAVSESSDFEGERGAYRLKGGIGPIPLPPTVHAVVAARIDRLGETAKNVLETAAVIGRS 579

Query: 481  ISLPVLDAVAGLAKPELLEAVGHLRRAELLYDVPPFEQRLIAFRHPLIQEVAYLSLLHER 540
            ++L VL  V GL   EL +A+  LR A+LLYD+PPF+  ++AFRHPLIQEVAY   L  R
Sbjct: 580  VALSVLKPVTGLVDAELFDALAQLRNADLLYDLPPFDMGVLAFRHPLIQEVAYAMQLRSR 639

Query: 541  RRELHAAVAQAIEKLFKDRAEERASLLAYHWEHAGEHLKAAQQHMRAAVWVGANDPSQAL 600
               +HAAVA+AIE L     +E A+L+A H+E AG+ +++ +   RAA W+G  + ++AL
Sbjct: 640  LSTVHAAVAKAIEALDWGSQDEFAALIASHYEFAGQTIQSVEHLQRAARWIGRTNTAEAL 699

Query: 601  RSWKKVRELLMHQPPSQMTDYLKMMACGQIVNFGWREGISAADAQVYFEEARGLALAMGD 660
            R WKK+R +L   P S+  + L+ +A  QI+NFGWREGISA + + + EEA   A +  D
Sbjct: 700  RLWKKIRAMLQAMPESEHVERLRSLASAQILNFGWREGISAEEVKPFAEEALRYARS-SD 758

Query: 661  LRANTLIHAAYGRILANGGSADEYVQRVLEAKALADTGTDTSVQVTLKAILCHALRLSGR 720
                 L+  AYGR+LA+ G+AD+YV  V  A  L     D     T+ A+L  A  LSGR
Sbjct: 759  KMHEPLVLGAYGRVLASTGAADDYVTLVQNAVKLTSEEGDVGRYATVNAMLSQAYLLSGR 818

Query: 721  MSEAL---QMNMEAAARASEIVK------SDRETLGFDVEIWLTAMRGQTLVMLGRGSEA 771
            + EAL   +  +EA AR S          +  + +GFDVE W+  +R +TL+ LGR  E 
Sbjct: 819  VREALSAAETALEAMARQSGFESNVTLGLNPNQIMGFDVEYWIKCLRARTLIQLGRFGEL 878

Query: 772  RPLLDRVLQLDGSQVDAIHYVIPSLAYVDLAWSEGDVGLAQHHADRAFALAVKSGNPYLR 831
            +  L  +L+    Q   +   IP  A ++ A  EG    A  H+     +A  +G PYLR
Sbjct: 879  QIQLTELLETPPDQAAPVVRFIPHFAAIEFARCEGRAEDAAMHSAELHQIAEAAGMPYLR 938

Query: 832  VYAQASRGLSHLVAGRITSSIEDLSAALDFARTRKAGLENEARILADLANAYRLKGDAAA 891
            V A A  G++  +AG +T +  D   A+D+AR  +AG+E EAR+L DLA+A    GD   
Sbjct: 939  VQALAGAGIARAIAGDVTHAAYDFREAIDYARRARAGMEFEARMLGDLADALYRAGDMQG 998

Query: 892  ALSAVNEAIAVAVKRHARIPE-------CLARSVRADLLLRSGRGDEAEEGTKELDRATA 944
            AL    EAI+VA +R  RI E       CL R+  A       R D  EE  + L  A  
Sbjct: 999  ALDTAGEAISVARRRTDRIGELHATLLRCLIRTSHAGF-----RND--EEAFQSLLDAER 1051

Query: 945  LLHETGAMIFAPFVGGAGKTVKASR 969
            LL  +GA I+ P +     +++ +R
Sbjct: 1052 LLEVSGAEIYKPMLIECRSSLEGTR 1076


>ref|ZP_02380857.1| adenylate/guanylate cyclase [Burkholderia ubonensis Bu]
          Length = 1160

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 318/967 (32%), Positives = 479/967 (49%), Gaps = 61/967 (6%)

Query: 2    RRLQPVLDLMNEAVHRYGGVVNKAQGDGVMAMFGAPQPHEDHAVRGCLAALAMQ------ 55
            R ++PV+ LM EAVH Y G V K+ GDG++A+FGAP  HEDH  R   AAL MQ      
Sbjct: 132  RLIEPVVALMMEAVHYYEGYVAKSLGDGILALFGAPIAHEDHPQRALFAALRMQQAMRSH 191

Query: 56   -DDVKRLHDVDLQIRVGVHTGEVVFQAIE-HGIYQTYDAAGANVHLASRLEHLAEPGTIL 113
             D ++    + LQIRVGVHTGEVV ++I    ++  YD  G  +H+ASR+E +A P +IL
Sbjct: 192  GDRIRLESGIPLQIRVGVHTGEVVVRSIRTDDLHTDYDPVGHTIHIASRMEGIATPSSIL 251

Query: 114  VSRETYAVAKQFVEVEALGEQAIRGLAAPVEVLRLRGLQHAPSSGVFRTGRRLSPLTGRA 173
            VS  T+ +A+ + E +ALG   ++G+  P+ V  + GL    +       R L+   GR 
Sbjct: 252  VSESTHKLAEGYFEFKALGATRVKGVPEPLPVYEVLGLGALRTRLQLAAHRGLARFVGRD 311

Query: 174  DEFATLTAELENTRKGDGRVIGVVGEAGIGKSRLCFEFAESCRSKGIRVFEARVLAHGRA 233
             E A L   L+  R G G+++GV GEAG+GKSRL  EF E  R +G  + E   ++HG+A
Sbjct: 312  AELAHLNRSLDEVRAGRGQIVGVRGEAGVGKSRLFHEFKERTR-RGCLLLETFSVSHGKA 370

Query: 234  TPFQPVLALLRDIFGLRIKEEPPDVSRRRVFDRLAAMPVS-DHLAPVLLEFLGLADPHRP 292
              + P++ LL++ F +  +++     R +V  ++  +  S + L P LL  LG+ +P   
Sbjct: 371  FAYLPLIELLKNYFQITAQDDERRC-REKVMGKVLTLERSFEDLVPYLLYLLGIGEPGAA 429

Query: 293  APKLDPKARKAQLLDFVGELVRAAPRDNVTVVLIDDLHWIDPASEEFVEALADAVVGTTT 352
              ++DP+ R+ +  D + +L+    RD    +L +DL W+D  +E F+  L + V  T  
Sbjct: 430  LAEMDPRIRRERTFDAITQLLARESRDQPVELLFEDLQWLDRETEAFLAHLGERVPATRI 489

Query: 353  MLLVNFRAGLTAPLMQRSHYRQINMAPLGPAEAQSILRDHFGTDPSLALLSRNIVERAHG 412
            +LLVN+R          +H  Q+ + PLG  EA+ +L    G DP+LA L + I+E+  G
Sbjct: 490  LLLVNYRPEYQPVWTHAAHGSQLRLEPLGSTEARGLLAALLGDDPTLAPLEQLILEKTEG 549

Query: 413  NPFFLEELMSALVERGDFEGEKGAYRLKGGIDTIPLPTTVQAVVAARIDRLDEHAKRALE 472
            NPFF+EE++  L E     G+ G YRL      + +PTTVQ V+AARIDRL    K  L+
Sbjct: 550  NPFFMEEVVQTLAEEQSLLGDPGRYRLGRTPAALHIPTTVQGVLAARIDRLPVAEKELLQ 609

Query: 473  VASVAGREISLP----VLDAVAGLAKPELLEAVGHLRRAELLYDVPPFEQRLIAFRHPLI 528
            + +V G+E        + D     A   L E + HL  AE +Y+ P F +   +F+H L 
Sbjct: 610  MLAVIGKEFPYSLIRRICDGRVAYADDALRELLAHLAAAEFIYERPAFPEVEYSFKHALT 669

Query: 529  QEVAYLSLLHERRRELHAAVAQAIEKLFKDRAEERASLLAYHWEHAG------EHL-KAA 581
            QEVA  SLL +RR  LH   AQAIE LF  R  +  S LA+H+  +G      E+L +AA
Sbjct: 670  QEVAGHSLLTQRRSALHERTAQAIEALFPTRIADYCSELAHHYSLSGNIPKAVEYLYQAA 729

Query: 582  QQHMRAAVWVGANDPSQALRSWKKVRELLMHQPPSQMTDYLKMMACGQIVNFGWREGISA 641
            QQ +R A      D    L +  K+ E L   P     +   ++A G  +      G  A
Sbjct: 730  QQALRHAAH---PDAMHHLGAALKLLERLPDTPERAHRELTLLLALGPALMD--VRGYGA 784

Query: 642  ADAQVYFEEARGLALAMGD----------LRANTLIHAAYGRILANGGSADEYVQRVLE- 690
             +    +  A  L    GD          LR + L  A Y        +A E  +++L+ 
Sbjct: 785  PEVAATYTRALALCEQTGDTSQRFAAQLGLRIHHLTRAEY-------ATARELGKQMLDV 837

Query: 691  AKALADTGTDTSVQVTLKAILCHALRLSGRMSEALQMNMEAAARASEIVKSDRETLGFDV 750
            A+  AD G        L A L     L G +  A + + E A    +  +         V
Sbjct: 838  ARQAADPGLLMEAHGALGACLF----LQGNLDTA-RNHQEQALAIYDPERHQAHVFAHGV 892

Query: 751  EIWLTAMRGQTLVMLGRGSEARPLLDRVLQLDGSQVDAIHYVIPSLAYV-----DLAWSE 805
            +  + A+   TL +  +G   + L   +  L  +Q  A     P+LA+      +L    
Sbjct: 893  DPGIRALNFLTLTLWLQGYPDKALKRSLEALALAQKLAYG---PTLAFTLAYAAELHQLR 949

Query: 806  GDVGLAQHHADRAFALAVKSGNPYLRVYAQASRGLSHLVAGRITSSIEDLSAALDFARTR 865
             +  LA+ HAD   ALA + G PY   +    RG S    G + + I  +S  L  A  R
Sbjct: 950  RESSLAREHADALIALATEHGLPYWLAWGTIFRGWSLTEQGSLQAGIAQMSEGL--AADR 1007

Query: 866  KAGLENE-ARILADLANAYRLKGDAAAALSAVNEAIAVAVKRHARIPECLARSVRADLLL 924
             AG E++ +  LA LA+++R  GD    L   ++A+A+  +   R  E     ++  +LL
Sbjct: 1008 AAGGEDQRSYFLALLADSHRRAGDRETGLRLFDDALAIMDRAGERCFEAELHRLKGIVLL 1067

Query: 925  RSGRGDE 931
                GD+
Sbjct: 1068 GEPSGDD 1074


>ref|YP_841036.1| ATP synthase beta subunit/transription termination factor Rho
            [Ralstonia eutropha H16]
 emb|CAJ96306.1| ATP synthase beta subunit/transription termination factor rho
            [Ralstonia eutropha H16]
          Length = 1155

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 324/987 (32%), Positives = 477/987 (48%), Gaps = 59/987 (5%)

Query: 2    RRLQPVLDLMNEAVHRYGGVVNKAQGDGVMAMFGAPQPHEDHAVRGCLAALAMQDDVKRL 61
            R + PV+ LM EAVH Y G V K  GDG++A+FGAP  HEDHA+R   AAL MQD + R 
Sbjct: 124  RLIDPVVTLMMEAVHHYEGYVAKFLGDGILALFGAPIAHEDHALRALYAALRMQDAMHRH 183

Query: 62   HD-------VDLQIRVGVHTGEVVFQAI-EHGIYQTYDAAGANVHLASRLEHLAEPGTIL 113
             D       + LQIR+GVHTGEVV ++I +  ++  YD  G  +H+ASR+E +A P +IL
Sbjct: 184  SDRVRLEQGIPLQIRIGVHTGEVVVRSIRKDDLHTDYDPVGHTIHIASRMEGIATPASIL 243

Query: 114  VSRETYAVAKQFVEVEALGEQAIRGLAAPVEVLRLRGLQHAPSSGVFRT------GRRLS 167
            VS  T+ + + + E  ALG   ++G+  P+ V  + GL      G  RT       R L+
Sbjct: 244  VSESTHKLTEGYFEFTALGTTHVKGVRDPLAVYEVVGL------GALRTRLQVAAHRGLA 297

Query: 168  PLTGRADEFATLTAELENTRKGDGRVIGVVGEAGIGKSRLCFEFAESCRSK-GIRVFEAR 226
               GR DE A L A L   + G GR++ VVGEAG+GKSRL  EF    RS+ G    E  
Sbjct: 298  RFVGRQDELAHLHAALGQAKAGHGRIVAVVGEAGVGKSRLFHEF--KVRSQQGCLALETF 355

Query: 227  VLAHGRATPFQPVLALLRDIFGLRIKEEPPDVS-RRRVFDRLAAM--PVSDHLAPVLLEF 283
             ++HG+A  + P++ +L+  F  +I  +  D S R +V  RL  +   + +HL P LL  
Sbjct: 356  SVSHGKAFAYLPLIEMLKSYF--QITAQDGDRSCREKVTGRLLTLDRSLEEHL-PYLLYL 412

Query: 284  LGLADPHRPAPKLDPKARKAQLLDFVGELVRAAPRDNVTVVLIDDLHWIDPASEEFVEAL 343
            LG  +P  P P +DP  R+ +  + +  L+     +    V+ +DL W+D  +E F+  L
Sbjct: 413  LGTIEPDSPLPTMDPTIRRQRTFEAIARLLVRESLNQPLEVIFEDLQWLDGETEAFLNML 472

Query: 344  ADAVVGTTTMLLVNFRAGLTAPLMQRSHYRQINMAPLGPAEAQSILRDHFGTDPSLALLS 403
             D V G   +LLVN+R   +       HY Q+ + PLG AEAQ +L    G D SL  L 
Sbjct: 473  IDHVPGARILLLVNYRPEYSHRWNADGHYSQLQLQPLGQAEAQELLTALLGDDRSLVPLK 532

Query: 404  RNIVERAHGNPFFLEELMSALVERGDFEGEKGAYRLKGGIDTIPLPTTVQAVVAARIDRL 463
            R I+++  GNPFF+EE++  L E G   G+ G YR++     + +PTTVQ V+AARIDRL
Sbjct: 533  RLILDKTEGNPFFMEEVVQTLAEEGALLGQPGCYRIETAPALLHIPTTVQGVLAARIDRL 592

Query: 464  DEHAKRALEVASVAGREISLPVLDAVAGLAKPELLEAVGHLRRAELLYDVPPFEQRLIAF 523
                K  L+  +V G+E  L ++  V GL +  L   +  L+ A+ +Y+ P F +   AF
Sbjct: 593  PLAQKELLQTLAVIGKEFPLSLVLRVTGLPEDHLHPLLSDLQAADFIYERPAFPEVEYAF 652

Query: 524  RHPLIQEVAYLSLLHERRRELHAAVAQAIEKLFKDRAEERASLLAYHWEHAGEHLKAAQQ 583
            +H L QEVA  SLL ERR  LH + AQAIE LF  R ++  S LA+H+ ++G   KA + 
Sbjct: 653  KHALTQEVAGSSLLTERRSALHESSAQAIEALFHGRLKDYCSELAHHYSNSGNIPKAVEY 712

Query: 584  -HMRAAVWVGANDPSQALRSWKKVRELLMHQPPS-----QMTDYLKMMACGQIVNFGWRE 637
             H      +  +  ++A+R      +LL  QP S     Q    L  +    I   G   
Sbjct: 713  LHCAGQQALLRSAQAEAIRHLSMAIDLLKRQPDSAERARQELTLLLALGPALIAARG--- 769

Query: 638  GISAADAQVYFEEARGLALAMGDLRANTLIHAAYGRILANGGSADEYVQRVLEAKALA-- 695
                A  +V     R LAL     +   L  A  G        A   V   L  + LA  
Sbjct: 770  ---QASPEVEGNYRRALALCEQGQQTPYLFSAQLGLWAFYQLRAQYEVSLPLGKRLLALA 826

Query: 696  -DTGTDTSVQVTLKAILCHALRLSGRMSEALQMNMEAAARASEIVKSDRETL---GFDVE 751
              +     +    +AI     RL   M +A + ++EA        +   + L   G D  
Sbjct: 827  MKSQKPKQLAEGHRAIGATLFRLG--MLDAARKHVEAVLAVPHPEQPAYDFLTGYGRDPA 884

Query: 752  IWLTAMRGQTLVMLGRGSEARPLLDRVLQLDGSQVDAIHYVIPSLAYVDLAWSEGDVGLA 811
            +  T+  G  L   G   +A       L +  ++ DA +  +  +   +      +V L 
Sbjct: 885  VHATSTLGWILWYQGLADQALARCQEALAMARARPDAYNLALCLVFAAEQHQCRHEVRLT 944

Query: 812  QHHADRAFALAVKSGNPYLRVYAQASRGLSHLVAGRITSSIEDL--SAALDFARTRKAGL 869
            Q +A+ A A++ + G P    +    +G +    G     +  +    A   A   + G+
Sbjct: 945  QEYAEAAIAISGEQGFPIYLAWGTVLQGWAMAALGSHQEGVALMRQGVAAYEATGGRLGM 1004

Query: 870  ENEARILADLANAYRLKGDAAAALSAVNEAIAVAVKRHARIPECLARSVRADLLL----- 924
             N   +LA +A A    G   AAL  + +A A+  +   R+ E     +RA++LL     
Sbjct: 1005 PN---LLALVAEACGKAGQTTAALDVLTQAQALVEETGERLDEATVYRLRAEMLLQLSAE 1061

Query: 925  RSGRGDEAEEGTKELDRATALLHETGA 951
            R       EE    L RA  + HE GA
Sbjct: 1062 RPAPPAAQEEAEACLHRAITVAHEQGA 1088


>ref|YP_002007959.1| adenylate cyclase; with tetratricopeptide tpr_4 motifs for
           protein-protein interaction [Cupriavidus taiwanensis LMG
           19424]
 emb|CAQ71903.1| putative adenylate cyclase; with Tetratricopeptide TPR_4 motifs for
           protein-protein interaction [Cupriavidus taiwanensis LMG
           19424]
          Length = 1156

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 246/634 (38%), Positives = 358/634 (56%), Gaps = 30/634 (4%)

Query: 2   RRLQPVLDLMNEAVHRYGGVVNKAQGDGVMAMFGAPQPHEDHAVRGCLAALAMQDDVKRL 61
           R + PV+ LM EAVH Y G V K  GDG++A+FGAP  HEDHA+R   AAL MQD + R 
Sbjct: 126 RLIDPVVTLMMEAVHHYEGYVAKFLGDGILALFGAPIAHEDHALRALYAALRMQDAMHRH 185

Query: 62  HD-------VDLQIRVGVHTGEVVFQAI-EHGIYQTYDAAGANVHLASRLEHLAEPGTIL 113
            D       + LQ+R+G+HTGEVV ++I +  ++  YD  G  +H+ASR+E +A P +IL
Sbjct: 186 SDRVRLEQGIPLQVRIGIHTGEVVVRSIRKDDLHTDYDPVGHTIHIASRMEGIATPASIL 245

Query: 114 VSRETYAVAKQFVEVEALGEQAIRGLAAPVEVLRLRGLQHAPSSGVFRT------GRRLS 167
           VS  T+ + + + E  ALG   ++G+  P+ V  + G       G  RT       R L+
Sbjct: 246 VSESTHKLTEGYFEFTALGTTNVKGVREPLAVYEVIG------PGPLRTRLQVAAHRGLA 299

Query: 168 PLTGRADEFATLTAELENTRKGDGRVIGVVGEAGIGKSRLCFEFAESCRSK-GIRVFEAR 226
              GR DE A L A LE  + G GR++ VVGEAG+GKSRL  EF    RS+ G    E  
Sbjct: 300 RFVGRQDELAHLNAALEQAKAGRGRIVAVVGEAGVGKSRLFHEF--KVRSQQGCLALETF 357

Query: 227 VLAHGRATPFQPVLALLRDIFGLRIKEEPPDVS-RRRVFDRLAAM--PVSDHLAPVLLEF 283
            ++HG+A  + P++ +L++ F  +I     D S R ++  RL  +   + +HL P LL  
Sbjct: 358 SVSHGKAFAYLPLIEMLKNYF--QITAHDGDRSCREKLTGRLLTLDRSLEEHL-PYLLYL 414

Query: 284 LGLADPHRPAPKLDPKARKAQLLDFVGELVRAAPRDNVTVVLIDDLHWIDPASEEFVEAL 343
           LG+ +P  P P +DP  R+ +  D +  L+    ++    V+ +DL W+D  +E F+  L
Sbjct: 415 LGVVEPDSPLPTMDPALRRQRTFDAIARLLVRESQNQPLEVIFEDLQWLDGETEAFLNML 474

Query: 344 ADAVVGTTTMLLVNFRAGLTAPLMQRSHYRQINMAPLGPAEAQSILRDHFGTDPSLALLS 403
            D V G   +LLVN+R   +      +HY Q+ + PLG AEAQ +L    G DPSLA L 
Sbjct: 475 VDHVPGARIVLLVNYRPEYSHRWEAGAHYSQLRLQPLGQAEAQELLTALLGDDPSLAPLK 534

Query: 404 RNIVERAHGNPFFLEELMSALVERGDFEGEKGAYRLKGGIDTIPLPTTVQAVVAARIDRL 463
           R I+++  GNPFF+EE++  L E G   G+ G+YR++     + +PTTVQ V+AARIDRL
Sbjct: 535 RLILDKTEGNPFFMEEVVQTLAEEGALLGQPGSYRIEKAPALLHIPTTVQGVLAARIDRL 594

Query: 464 DEHAKRALEVASVAGREISLPVLDAVAGLAKPELLEAVGHLRRAELLYDVPPFEQRLIAF 523
               K  L+  +V G+E  L ++  V GL +  L   +  L+ A+ +Y+ P F +   AF
Sbjct: 595 PLAQKELLQTLAVIGKEFPLGLVLRVTGLPEERLHPLLRDLQSADFIYERPAFPEVEYAF 654

Query: 524 RHPLIQEVAYLSLLHERRRELHAAVAQAIEKLFKDRAEERASLLAYHWEHAGEHLKAAQQ 583
           +H L QEVA  SLL ERR  LH + AQAIE +F+ R ++  S LA+H+  +G   KA + 
Sbjct: 655 KHALTQEVAGSSLLTERRSALHESSAQAIEAMFQGRLKDYCSELAHHYSLSGNVPKAVEY 714

Query: 584 -HMRAAVWVGANDPSQALRSWKKVRELLMHQPPS 616
            H      +  +   +A+R   +   LL  QP S
Sbjct: 715 LHCAGQQALQRSAQEEAIRHLSEAIALLKRQPDS 748


>ref|YP_004681716.1| ATP synthase beta subunit/transription termination factor rho
            [Cupriavidus necator N-1]
 gb|AEI80484.1| ATP synthase beta subunit/transription termination factor rho
            [Cupriavidus necator N-1]
          Length = 1155

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 314/956 (32%), Positives = 470/956 (49%), Gaps = 54/956 (5%)

Query: 2    RRLQPVLDLMNEAVHRYGGVVNKAQGDGVMAMFGAPQPHEDHAVRGCLAALAMQDDVKRL 61
            R + PV+ LM EAVH Y G V K  GDG++A+FGAP  HEDHA+R   AAL MQD + R 
Sbjct: 124  RLIDPVVTLMMEAVHHYEGYVAKFLGDGILALFGAPIAHEDHALRALYAALRMQDAMHRH 183

Query: 62   HD-------VDLQIRVGVHTGEVVFQAI-EHGIYQTYDAAGANVHLASRLEHLAEPGTIL 113
             D       + LQIR+GVHTGEVV ++I +  ++  YD  G  +H+ASR+E +A P +IL
Sbjct: 184  SDRVRLEQGIPLQIRIGVHTGEVVVRSIRKDDLHTDYDPVGHTIHIASRMEGIATPASIL 243

Query: 114  VSRETYAVAKQFVEVEALGEQAIRGLAAPVEVLRLRGLQHAPSSGVFRT------GRRLS 167
            VS  T+ + + + E  ALG   ++G+  P+ V  + GL      G  RT       R L+
Sbjct: 244  VSESTHRLTEGYFEFTALGTTHVKGVRDPLAVYEVVGL------GALRTRLQVAAHRGLA 297

Query: 168  PLTGRADEFATLTAELENTRKGDGRVIGVVGEAGIGKSRLCFEFAESCRSK-GIRVFEAR 226
               GR DE A L A LE  + G GR++ VVGEAG+GKSRL  EF    RS+ G    E  
Sbjct: 298  RFVGRQDELAHLHAALEQAKAGHGRIVAVVGEAGVGKSRLFHEF--KVRSQQGCLALETF 355

Query: 227  VLAHGRATPFQPVLALLRDIFGLRIKEEPPDVS-RRRVFDRLAAM--PVSDHLAPVLLEF 283
             ++HG+A  + P++ +L+  F  +I  +  D S R +V  RL  +   + +HL P LL  
Sbjct: 356  SVSHGKAFAYLPLIEMLKSYF--QITAQDGDRSCREKVTGRLLTLDRSLEEHL-PYLLYL 412

Query: 284  LGLADPHRPAPKLDPKARKAQLLDFVGELVRAAPRDNVTVVLIDDLHWIDPASEEFVEAL 343
            LG  +P  P P +DP  R+ +  D +  L+     +    V+ +DL W+D  +E F+  L
Sbjct: 413  LGTIEPDSPLPTMDPTIRRQRTFDAIARLLVRESLNQPLEVIFEDLQWLDGETEAFLNML 472

Query: 344  ADAVVGTTTMLLVNFRAGLTAPLMQRSHYRQINMAPLGPAEAQSILRDHFGTDPSLALLS 403
             D V G   +LLVN+R   +       HY Q+ + PLG AEAQ +L    G D SL  L 
Sbjct: 473  IDHVPGARILLLVNYRPEYSHHWNADGHYSQLQLQPLGQAEAQELLTALLGDDRSLVPLK 532

Query: 404  RNIVERAHGNPFFLEELMSALVERGDFEGEKGAYRLKGGIDTIPLPTTVQAVVAARIDRL 463
            R ++++  GNPFF+EE++  L E G   G+ G YR++     + +PTTVQ V+AARIDRL
Sbjct: 533  RLVLDKTEGNPFFMEEVVQTLAEEGALLGQPGCYRIETAPALLHIPTTVQGVLAARIDRL 592

Query: 464  DEHAKRALEVASVAGREISLPVLDAVAGLAKPELLEAVGHLRRAELLYDVPPFEQRLIAF 523
                K  L+  +V G+E  L ++  V GL +  L   +  L+ A+ +Y+ P F +   AF
Sbjct: 593  PLAQKELLQTLAVIGKEFPLSLVLRVTGLPEDHLHPLLADLQAADFVYERPAFPEVEYAF 652

Query: 524  RHPLIQEVAYLSLLHERRRELHAAVAQAIEKLFKDRAEERASLLAYHWEHAGEHLKAAQQ 583
            +H L QEVA  SLL ERR  LH + AQAIE LF  R ++  S LA+H+  +G   KA + 
Sbjct: 653  KHALTQEVAGSSLLTERRSALHESSAQAIEALFHGRLKDYCSELAHHYSLSGNIPKAVEY 712

Query: 584  -HMRAAVWVGANDPSQALRSWKKVRELLMHQPPS-----QMTDYLKMMACGQIVNFGWRE 637
             H      +  +  ++A+R      +L+  QP S     Q    L  +    I   G   
Sbjct: 713  LHCAGQQALLRSAQAEAIRHLSTAIDLIKRQPDSAERARQELTLLLALGPALIAARG--- 769

Query: 638  GISAADAQVYFEEARGLALAMGDLRANTLIHAAYGRILANGGSADEYVQRVLEAKALA-- 695
                A  +V     R LAL     +   L  A  G        A   V   L  + LA  
Sbjct: 770  ---QASPEVEGNYRRALALCEQGQQTPYLFSAQLGLWAFYQLRAQYQVSLPLGKRLLALA 826

Query: 696  -DTGTDTSVQVTLKAILCHALRLSGRMSEALQMNMEAAARASEIVKSDRETL---GFDVE 751
              +     +    +AI     RL   M +A + ++EA        +   + L   G D  
Sbjct: 827  MKSQKPKQLAEGHRAIGATLFRLG--MLDAARKHVEAVLAVPHPEQPAYDFLTGYGRDPA 884

Query: 752  IWLTAMRGQTLVMLGRGSEARPLLDRVLQLDGSQVDAIHYVIPSLAYVDLAWSEGDVGLA 811
            +  T+  G  L   G   +A       L +  ++ DA +  +  +   +      +V L 
Sbjct: 885  VHATSTLGWILWYQGLADQALARCQEALAMARARPDAYNLALCLVFAAEQHRCRHEVRLT 944

Query: 812  QHHADRAFALAVKSGNPYLRVYAQASRG--LSHLVAGRITSSIEDLSAALDFARTRKAGL 869
            Q +A+ A A++ + G P    +    +G  ++ L + +   ++     A   A   + G+
Sbjct: 945  QEYAEAAIAISGEQGFPIYLSWGTVLQGWAMAELGSHQEGVALTRQGVAAYEATGGRLGM 1004

Query: 870  ENEARILADLANAYRLKGDAAAALSAVNEAIAVAVKRHARIPECLARSVRADLLLR 925
             N   +LA +A A    G   AAL  + +A A+  +   R+ E     +RA++LL+
Sbjct: 1005 PN---LLALVAEACGRAGQTTAALDVLTQAQALVEETGERLDESTVYRLRAEMLLQ 1057