BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0082.0053.p (383 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001631905.1| hypothetical protein Bpet3295 [Bordetella pe... 332 6e-89 ref|YP_998736.1| extracellular ligand-binding receptor [Verminep... 295 1e-77 ref|ZP_01881281.1| Twin-arginine translocation pathway signal [R... 136 7e-30 ref|YP_001189316.1| extracellular ligand-binding receptor [Pseud... 135 1e-29 ref|YP_001642292.1| extracellular ligand-binding receptor [Methy... 126 8e-27 >ref|YP_001631905.1| hypothetical protein Bpet3295 [Bordetella petrii DSM 12804] emb|CAP43637.1| putative exported protein [Bordetella petrii] Length = 394 Score = 332 bits (851), Expect = 6e-89, Method: Compositional matrix adjust. Identities = 164/369 (44%), Positives = 236/369 (63%) Query: 12 AIAQSEPIKIGCLAAITGPSSAPTVGFNRGVNFAVDAINGAGGVKGRKIELVMRDTQGDP 71 A AQ EPI+IG L+++TGP S+ + N+GV FAV+ IN AGG+KGRK+EL+ RDT GDP Sbjct: 25 ADAQGEPIRIGWLSSLTGPLSSAAIAENQGVQFAVEEINKAGGIKGRKLELLTRDTAGDP 84 Query: 72 TKAVNATQELISQAKVHAIWGPLNSGEALATTPIMARAKMPDLHPCVVETLIDPVKFPNA 131 TKAVN ++L + KV + GP+NSGE+LAT PI+ARA +P+L V+TL DP K+P A Sbjct: 85 TKAVNYAKQLAYEDKVAYVIGPVNSGESLATVPILARAGIPNLIIGTVDTLTDPKKYPLA 144 Query: 132 FRIAPSNNQWDDAVRNYCLKILKVKKVAVIGDTTGYGVTAVGASVAAFKKDGAEVAYQAN 191 FR+ +N QW + Y L+ LK KK+AVIGDTTGYG ++ + A + G + Y Sbjct: 145 FRVINTNEQWISSANKYALETLKRKKIAVIGDTTGYGASSAKRAAALLEDAGIKPVYSVL 204 Query: 192 IDATQPDMTPDMLRAKNAGAEAIVVWSVSTGMEARMFNTRAAMNWDVPFVGHPSMASGEL 251 ID + +T ++ +A++AGA+ I+ WS +TG+ AR+ N R + WDVP VGHP++ + Sbjct: 205 IDPNKTSVTDEIQKARDAGADVIMPWSAATGLLARILNARGNLQWDVPVVGHPALMGLPI 264 Query: 252 ASLVAKPENWKKVYAIGYKSCSYDGAGKLPPKSADLVARLTKANIALNDTLLWWVAGGID 311 L+ KPE W YA GY S +YD GKLP ++ L+ ++ D WWVA G D Sbjct: 265 RDLLNKPEYWDNTYAAGYASTTYDANGKLPERTQALMDAISPKLGGKIDFTFWWVALGYD 324 Query: 312 CIELIAKAVAESGSTDSAGIIKYWNTLSTYPGYFGNYRFSPTEHNGYLTEEIVMSEASTA 371 +++I AV ++G TD+ K PG + +Y ++P +HNG+ +V++ A+T Sbjct: 325 TVKIIEHAVQQTGGTDAQAFRKTLEGTRNMPGVYADYTWTPDDHNGFPDSAMVLNRANTF 384 Query: 372 KDGTFALAP 380 KDG+F LAP Sbjct: 385 KDGSFQLAP 393 >ref|YP_998736.1| extracellular ligand-binding receptor [Verminephrobacter eiseniae EF01-2] gb|ABM59718.1| Extracellular ligand-binding receptor [Verminephrobacter eiseniae EF01-2] Length = 391 Score = 295 bits (754), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 148/366 (40%), Positives = 215/366 (58%), Gaps = 1/366 (0%) Query: 16 SEPIKIGCLAAITGPSSAPTVGFNRGVNFAVDAINGAGGVKGRKIELVMRDTQGDPTKAV 75 S PI+IG +A++TGP + +G + GV FAV+ IN AGG+ GRKIEL+ RDT GDP KA Sbjct: 25 SAPIRIGWMASLTGPLATAAIGIDTGVRFAVEEINAAGGIDGRKIELLTRDTAGDPNKAA 84 Query: 76 NATQELISQAKVHAIWGPLNSGEALATTPIMARAKMPDLHPCVVETLIDPVKFPNAFRIA 135 Q+LI K I GP+NSGEALAT P++AR P++ VE L D K+P FR+ Sbjct: 85 TFAQQLIHSDKAQIILGPVNSGEALATVPLVARTGTPNIVTGAVEELTDARKYPRTFRVI 144 Query: 136 PSNNQWDDAVRNYCLKILKVKKVAVIGDTTGYGVTAVGASVAAFKKDGAEVAYQANIDAT 195 + QW A +Y L +K +K+A+IGDTTGYG +V + KK G Y +D Sbjct: 145 NTTTQWVSAADDYVLDAMKRRKIALIGDTTGYGTVSVRTATEDLKKKGVTPVYTVLVDPN 204 Query: 196 QPDMTPDMLRAKNAGAEAIVVWSVSTGMEARMFNTRAAMNWDVPFVGHPSMASGELASLV 255 + D++ ++ +A+ AGAE ++ WS +TG+ AR+ N R WDVP +GHPS+ + L L+ Sbjct: 205 KTDLSDEIGKARAAGAEVLMPWSAATGVLARLLNARGDAGWDVPVIGHPSLMALALKQLL 264 Query: 256 AKPENWKKVYAIGYKSCSYDGAGKLPPKSADLVARLT-KANIALNDTLLWWVAGGIDCIE 314 KP W+ VY GY + SYD +GKLP ++ L+ ++ K LLWW+ G D ++ Sbjct: 265 NKPSYWENVYGAGYAATSYDASGKLPQRTQALLDKIRPKLGGKEVGILLWWIGLGYDAVK 324 Query: 315 LIAKAVAESGSTDSAGIIKYWNTLSTYPGYFGNYRFSPTEHNGYLTEEIVMSEASTAKDG 374 L A+ ++GSTD A I K + ++P + +G+ + ++ A+T KDG Sbjct: 325 LAEHAIRKAGSTDPAAIQKALEGTVEFKAMLSTLSYAPDQRDGFPDGGMAINIANTFKDG 384 Query: 375 TFALAP 380 F AP Sbjct: 385 CFKRAP 390 >ref|ZP_01881281.1| Twin-arginine translocation pathway signal [Roseovarius sp. TM1035] gb|EDM30246.1| Twin-arginine translocation pathway signal [Roseovarius sp. TM1035] Length = 394 Score = 136 bits (342), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 102/365 (27%), Positives = 177/365 (48%), Gaps = 8/365 (2%) Query: 7 SFPAPAIAQSEPIKIGCLAAITGPSSAPTVGFNRGVNFAVDAINGAGGVKGRKIELVMRD 66 +F P +AQ + IKIG +A+++GPS+ RG+ A+D IN AGG+ G+++E++ RD Sbjct: 24 AFATPGLAQ-DTIKIGLIASLSGPSAKSGEAITRGMALAIDEINAAGGLLGKQVEMIRRD 82 Query: 67 TQGDPTKAVNATQELISQAKVHAIWGPLNSGEALATTPIMARAKMPDLHPCVVETLI--D 124 + +P K + A +EL+ + V ++G L + +LA P M +AK+P + P T I + Sbjct: 83 DEDNPGKGLTAARELVQREGVVVLFGGLQTPVSLALVPYMNQAKVPFMGPWAAGTPITQN 142 Query: 125 PVKFPNAFRIAPSNNQWDDAVRNYCLKILKVKKVAVIGDTTGYGVTAVGASVAAFKKDGA 184 + FR++ + D A+ + + K ++ +G + AA + G Sbjct: 143 GAEENYVFRVSAVDEMVDVALVERAVTVHGSKNPGMMLINNPWGESNEKGLTAALEAKGM 202 Query: 185 EVAYQANIDATQPDMTPDMLRAKNAGAEAIVVWSVSTGMEARMFNTRAAMNWDVPFVGHP 244 A ++A D+ P + R K AGA+AI + + + G A++ + M WDVP + H Sbjct: 203 PTAGIERVEANDIDVVPQLTRLKEAGADAIFMVA-NVGPSAQVMKSLERMGWDVPVISHW 261 Query: 245 SMASGELASLVAKPENWKKVYAIGYKSCSYDGAGKLPPKSADLVARLTKANIALNDTLLW 304 A G + L A P K V I + S + + K L+A+ + + T Sbjct: 262 GPAGGRFSEL-AGPRA-KDVEMIQTFTFSGNDSPKAAATLDALMAKFPEIKGPADVTPAV 319 Query: 305 WVAGGIDCIELIAKAVAESGSTDSAGIIKYWNTLSTYPGYFGNYR--FSPTEHNGYLTEE 362 +A D + L A A+ +GSTD I + + + +Y G Y F+P +H+ E+ Sbjct: 320 GIANAYDAMHLTALAIQNAGSTDGPAIRQGFYDIDSYDGLIKTYSTPFTPEQHDALGAED 379 Query: 363 IVMSE 367 V + Sbjct: 380 YVFTR 384 >ref|YP_001189316.1| extracellular ligand-binding receptor [Pseudomonas mendocina ymp] gb|ABP86584.1| amino acid/amide ABC transporter substrate-binding protein, HAAT family [Pseudomonas mendocina ymp] Length = 395 Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 106/369 (28%), Positives = 175/369 (47%), Gaps = 16/369 (4%) Query: 6 FSFPAPAIAQSEPIKIGCLAAITGPSSAPTVGFNRGVNFAVDAINGAGGVKGRKIELVMR 65 FS A A +EPIK+G +AA++G S+ RG+ A+D +N GGV GR ++LV R Sbjct: 25 FSLSAQA---AEPIKVGLVAALSGQSAKSGEALTRGLTIAIDEVNAQGGVLGRPLQLVRR 81 Query: 66 DTQGDPTKAVNATQELISQAKVHAIWGPLNSGEALATTPIMARAKMPDLHPCVVETLIDP 125 D + +P+K + A +ELI + KV ++G L++ +LA P+ + KMP + T P Sbjct: 82 DDESNPSKGLLAARELIQREKVAVLFGGLDTPVSLAIVPLANQMKMPFMGVWAAGT---P 138 Query: 126 VKFPNA-----FRIAPSNNQWDDAVRNYCLKILKVKKVAVIGDTTGYGVTAVGASVAAFK 180 + A FR++ + D+A+ +Y K +K +I +G + A Sbjct: 139 ITRNGAADNYVFRVSAVDELVDEALVSYAQKHFATQKPGMILINNPWGESNEQGFRKALA 198 Query: 181 KDGAEVAYQANIDATQPDMTPDMLRAKNAGAEAIVVWSVSTGMEARMFNTRAAMNWDVPF 240 G VA I+ + D+ P + R K AGA+ +++ + + A++ + M WDVP Sbjct: 199 ARGMPVAGVERIEGSDLDVVPQLSRLKQAGADTLLLVA-NVAPSAQVVKSLDRMGWDVPV 257 Query: 241 VGHPSMASGELASLVAKPENWKKVYAIGYKSCSYDGAGKLPPKSADLVARLTKANIALND 300 V H A G L A P N +V+ I + S +G + A L R + + Sbjct: 258 VSHWGPAGGRFGEL-AGP-NAGRVHFIQTYTFSQEGDARGEAIFAALQKRYPEIKSLADV 315 Query: 301 TLLWWVAGGIDCIELIAKAVAESGSTDSAGIIKYWNTLSTYPGYFGNYR--FSPTEHNGY 358 T +A D + L A+A+A +GST+ I + + Y G Y FS +H+ Sbjct: 316 TPAVGIANAYDALHLTAQAIAAAGSTEGPAIRDGYYGIQRYEGLIKTYEKPFSAEQHDAL 375 Query: 359 LTEEIVMSE 367 ++ V + Sbjct: 376 GVDDYVFTR 384 >ref|YP_001642292.1| extracellular ligand-binding receptor [Methylobacterium extorquens PA1] gb|ABY33221.1| Extracellular ligand-binding receptor [Methylobacterium extorquens PA1] Length = 396 Score = 126 bits (316), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 103/363 (28%), Positives = 173/363 (47%), Gaps = 15/363 (4%) Query: 12 AIAQSEPIKIGCLAAITGPSSAPTVGFNRGVNFAVDAINGAGGVKGRKIELVMRDTQGDP 71 A+ +EP+KIG + A++G S+ +RG+ A++ IN GGV GR +ELV RD + +P Sbjct: 29 AVRAAEPVKIGLVTALSGQSAKSGEAISRGIGLAIEEINRNGGVLGRPLELVARDDEANP 88 Query: 72 TKAVNATQELISQAKVHAIWGPLNSGEALATTPIMARAKMPDLHPCVVETLIDPVKFPN- 130 +K V A +ELI +A V A+ G L++ ++A PI + K+P + P T I + Sbjct: 89 SKGVLAARELIQRAGVVALIGGLDTPVSMAIVPIANQMKVPFVGPWAAGTGITRNGAADN 148 Query: 131 -AFRIAPSNNQWDDAVRNYCLKILKVKKVAVIGDTTGYGVTAVGASVAAFKKDGAEVAYQ 189 FR++ + D+A+ Y +K KK I +G + VAA K G A Sbjct: 149 YVFRVSAVDALVDEALVAYAVKTYGAKKPGAILVNNAWGESNQQGLVAALKAAGLPSAGI 208 Query: 190 ANIDATQPDMTPDMLRAKNAGAEAIVVWSVSTGMEARMFNTRAAMNWDVPFVGHPSMASG 249 +A DM P + R + AGA+A+ + + G A++ + M W VP + H A G Sbjct: 209 EKYEANDIDMVPQLSRLREAGADALFLVG-NVGPSAQVVKSLDRMGWTVPVISHWGPAGG 267 Query: 250 ELASLVAKPENWKKVYAIGYKSCSYDGAGKLPPKSADLVARLTKANIALND----TLLWW 305 L A P +V+ + ++ AG PK+ ++ L A+ T Sbjct: 268 RFDEL-AGP-GAARVHFV----QTFTFAGNDSPKAKAVLDALKAKYPAIKSMADVTPAVG 321 Query: 306 VAGGIDCIELIAKAVAESGSTDSAGIIKYWNTLSTYPGYFGNYR--FSPTEHNGYLTEEI 363 +A D LIA A+ +G+T+ + + ++ Y G Y F+P +H+ ++ Sbjct: 322 IANAYDATHLIALAIQAAGATEGPKVRDGFYKVAPYAGLIKTYEAPFAPGQHDALKPDDY 381 Query: 364 VMS 366 + + Sbjct: 382 IFA 384