BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0082.0051.p (618 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_773190.1| ABC transporter permease [Bradyrhizobium japoni... 897 0.0 ref|ZP_02384402.1| TRAP transporter, DctM subunit subfamily, put... 488 e-135 ref|ZP_02370497.1| TRAP transporter, DctM subunit subfamily, put... 486 e-135 ref|YP_439181.1| TRAP transporter DctM family protein [Burkholde... 486 e-135 ref|YP_001863045.1| TRAP dicarboxylate transporter, DctM subunit... 483 e-134 >ref|NP_773190.1| ABC transporter permease [Bradyrhizobium japonicum USDA 110] dbj|BAC51815.1| bll6550 [Bradyrhizobium japonicum USDA 110] Length = 619 Score = 897 bits (2318), Expect = 0.0, Method: Compositional matrix adjust. Identities = 483/583 (82%), Positives = 521/583 (89%) Query: 36 VVVCVSVLARFLFNAPVEWSDDVARGLMVGSSFFGAASALARSENLGVAFFVNMLPHALR 95 VVVC SVL RF FNAPVEWSDDVARGLMVGS+FFGAASALAR EN+GV+FF ++LP LR Sbjct: 37 VVVCASVLLRFCFNAPVEWSDDVARGLMVGSAFFGAASALARGENVGVSFFRDLLPLRLR 96 Query: 96 RMVDAVGALLVTIIAGYVAFNAVKMGWLTTGQTSGSGLPLEWTFYPMGIGAAFMTVFAFE 155 +VDA A+LV +I+ YVA+NA+K+G LT GQT+GSGLPLE TFYPMGIGA FMTVFA + Sbjct: 97 TLVDAASAVLVVLISFYVAYNAIKLGSLTAGQTTGSGLPLELTFYPMGIGALFMTVFAID 156 Query: 156 TFCGRPLRDMAAAIVAPAVIVGLYLAWDAFAPSSVPSSQALMLIGFFLTLFGGLPIGFAL 215 C RPL D+ +VA AV+ GLYLAWD +PSSVPS+ LMLIGFF LFGGLPIGFAL Sbjct: 157 QLCARPLPDIVRGLVAVAVVTGLYLAWDYLSPSSVPSAGTLMLIGFFAMLFGGLPIGFAL 216 Query: 216 ALAALIFIWVEGTLPGVIFAQQMARGIDNFVLLAIPFFILVGYLMEANGMSVRLIELLQR 275 ALAALIFIWVEG LPGVIFAQQMARGIDNFVLLAIPFFILVGYLMEANGMSVRLIELLQR Sbjct: 217 ALAALIFIWVEGALPGVIFAQQMARGIDNFVLLAIPFFILVGYLMEANGMSVRLIELLQR 276 Query: 276 AVGRMRGGLNVVMVMSMVLFSGISGSKMADVAAVGSVLIPAARRSRQSPGGAVALLAASA 335 VGRMRGGLNVVMV SMVLFSGISGSKMADVAAVGSVLIPAARRS+Q+PGGAVALLAASA Sbjct: 277 GVGRMRGGLNVVMVASMVLFSGISGSKMADVAAVGSVLIPAARRSKQNPGGAVALLAASA 336 Query: 336 VMAETIPPCINLIILGFVANLSIGGLFVAGMLPAALMALALIAVSIIFGKRPAANVEAEP 395 VMAETIPPCINLIILGFVANLSIGGLFVAG+LPAALMAL LIAVSIIFGKRPA + P Sbjct: 337 VMAETIPPCINLIILGFVANLSIGGLFVAGLLPAALMALVLIAVSIIFGKRPAEAEDVAP 396 Query: 396 RAAVSGLWTGAIASFGLIFMIFFGFKSGFATATEISAFAAVYAIAVGSLLFRELGVKSLA 455 + VSGLW+GAIASFGLIFMIFFGFKSGFATATEISAFA YA+ VGSL+FREL KS A Sbjct: 397 QMPVSGLWSGAIASFGLIFMIFFGFKSGFATATEISAFAVAYALVVGSLVFRELSFKSAA 456 Query: 456 HCFVQSAVRSGLVLFIVAAAQSLAFILTLQQVPHAVGDLMLAISGSHGVWLFMLLSILVL 515 H FVQ+A R+GLVLFIVAAAQSLAF LTLQQVPHAVGD ML +S + GVWLF+LL+I VL Sbjct: 457 HSFVQAATRAGLVLFIVAAAQSLAFTLTLQQVPHAVGDFMLGLSKTSGVWLFILLAIAVL 516 Query: 516 VVMGSVLEGAAALIIFGPLLLPVAVKLGIDPLHFGVVLVIAMGLGLFAPPLGLGLYGACL 575 +VMGSVLEGAAALIIFGPLLLPVAV+LGIDPLHFGVVLVIAMG+GLFAPPLGLGLYGACL Sbjct: 517 IVMGSVLEGAAALIIFGPLLLPVAVQLGIDPLHFGVVLVIAMGIGLFAPPLGLGLYGACL 576 Query: 576 IGNVPIEQTIKPIAGYLGLLLLCLLVIAFVPAISTALPHALGY 618 IGNVPIEQT+KPI GYLGLL LCLLVIAFVP +STALP A GY Sbjct: 577 IGNVPIEQTVKPIMGYLGLLFLCLLVIAFVPWLSTALPRAFGY 619 >ref|ZP_02384402.1| TRAP transporter, DctM subunit subfamily, putative [Burkholderia thailandensis Bt4] Length = 631 Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust. Identities = 280/595 (47%), Positives = 398/595 (66%), Gaps = 2/595 (0%) Query: 24 DAIAALLLAADLVVVCVSVLARFLFNAPVEWSDDVARGLMVGSSFFGAASALARSENLGV 83 + + A +LAAD++VV +SV+ R+ + P +W+++VA LM+ F GAA+ LARS+++G+ Sbjct: 37 EYLCAAVLAADVLVVFLSVIYRYFLHDPFDWAEEVAAALMIVLVFLGAATVLARSQHVGI 96 Query: 84 AFFVNMLPHALRRMVDAVGALLVTIIAGYVAFNAVKMGWLTTGQTSGSGLPLEWTFYPMG 143 F M P + + G ++ +AG + ++ + + GQ + SGLP YP+ Sbjct: 97 DLFRGMFPKRWQPALVHAGHWVIAGVAGNLCVSSCLLLADSYGQMTPSGLPAWINVYPLV 156 Query: 144 IGAAFMTVFAFETFCGRPLRDMAAAIVAPAVIVGLYLAWDAFAPSSVPSSQALMLIGFFL 203 IG+ FMTVFA + + ++ ++ AW+AF P L++ GF Sbjct: 157 IGSVFMTVFALANALNGARKTVLGTLIGCVLLAAAVFAWNAFVPGHALKPGFLLMAGFIG 216 Query: 204 TLFGGLPIGFALALAALIFIWVEGTLPGVIFAQQMARGIDNFVLLAIPFFILVGYLMEAN 263 L G+PIGF LA +AL++ E +LP ++++QQ+ G D+FVLLAIPFF+L G LME N Sbjct: 217 GLVLGVPIGFVLAFSALLYFLAEPSLPMLVYSQQVMAGTDHFVLLAIPFFVLAGLLMETN 276 Query: 264 GMSVRLIELLQRAVGRMRGGLNVVMVMSMVLFSGISGSKMADVAAVGSVLIPAARRSRQS 323 GMS RLIELL R GR+RGGL ++ +M+ FSG+SGSK+AD+AAVG V++PA R SR+ Sbjct: 277 GMSSRLIELLLRIFGRVRGGLGLITIMATAFFSGVSGSKLADIAAVGGVVMPAVRLSRED 336 Query: 324 PGGAVALLAASAVMAETIPPCINLIILGFVANLSIGGLFVAGMLPAALMALALIAVSIIF 383 P A ALLA SAVMAETIPPC+N+II+GFVAN+SI GLF+AG++PAA++A L AV++I Sbjct: 337 PNEAAALLACSAVMAETIPPCVNMIIMGFVANISIAGLFLAGVVPAAVLAATLAAVAVIC 396 Query: 384 GKR-PAANVEAEPRAAVSGLWTGAIASFGLIFMIFFGFKSGFATATEISAFAAVYAIAVG 442 G+R A+ PRA + L GA+ + +I MI G SG AT+TE+SAFA VYA+ VG Sbjct: 397 GRRINLADALPHPRAWMP-LLGGALVALVMITMIGKGVTSGIATSTEVSAFAVVYALIVG 455 Query: 443 SLLFRELGVKSLAHCFVQSAVRSGLVLFIVAAAQSLAFILTLQQVPHAVGDLMLAISGSH 502 L FREL KS+ FV+SA + +LFIVAAA S++F LT++Q+P V D M+ + + Sbjct: 456 GLAFRELTPKSVVRVFVRSASMASSILFIVAAASSVSFALTIEQIPALVSDSMIVFAHQY 515 Query: 503 GVWLFMLLSILVLVVMGSVLEGAAALIIFGPLLLPVAVKLGIDPLHFGVVLVIAMGLGLF 562 G F+LLS+L+++V G+VLEGA ALIIFGPLL P+A +LGI+PLHFG V+V+AMGLGLF Sbjct: 516 GPTTFLLLSVLIMIVFGAVLEGAPALIIFGPLLTPIAAQLGINPLHFGTVIVVAMGLGLF 575 Query: 563 APPLGLGLYGACLIGNVPIEQTIKPIAGYLGLLLLCLLVIAFVPAISTALPHALG 617 APP+GLGL+ C I ++ ++P+ YL +L L+ + VP+ S LP LG Sbjct: 576 APPIGLGLFATCAITGTEMKAVVRPMLKYLLVLCTALVALILVPSFSLWLPTRLG 630 >ref|ZP_02370497.1| TRAP transporter, DctM subunit subfamily, putative [Burkholderia thailandensis TXDOH] Length = 608 Score = 486 bits (1252), Expect = e-135, Method: Compositional matrix adjust. Identities = 280/595 (47%), Positives = 398/595 (66%), Gaps = 2/595 (0%) Query: 24 DAIAALLLAADLVVVCVSVLARFLFNAPVEWSDDVARGLMVGSSFFGAASALARSENLGV 83 + + A +LAAD++VV +SV+ R+ + P +W+++VA LM+ F GAA+ LARS+++G+ Sbjct: 14 EYLCAAVLAADVLVVFLSVIYRYFLHDPFDWAEEVAAALMIVLVFLGAATVLARSQHVGI 73 Query: 84 AFFVNMLPHALRRMVDAVGALLVTIIAGYVAFNAVKMGWLTTGQTSGSGLPLEWTFYPMG 143 F M P + ++ G ++ +AG + ++ + + GQ + SGLP YP+ Sbjct: 74 DLFRGMFPKRWQPVLVHAGHWVIAGVAGNLCVSSCLLLADSYGQMTPSGLPAWINVYPLV 133 Query: 144 IGAAFMTVFAFETFCGRPLRDMAAAIVAPAVIVGLYLAWDAFAPSSVPSSQALMLIGFFL 203 IG+ FMTVFA + + ++ ++ AW+AF P L++ GF Sbjct: 134 IGSVFMTVFALANALNGARKTVLGTLIGCVLLAAAVFAWNAFVPGHALKPGFLLMAGFIG 193 Query: 204 TLFGGLPIGFALALAALIFIWVEGTLPGVIFAQQMARGIDNFVLLAIPFFILVGYLMEAN 263 L G+PIGF LA +AL++ E +LP ++++QQ+ G D+FVLLAIPFF+L G LME N Sbjct: 194 GLVLGVPIGFVLAFSALLYFLAEPSLPMLVYSQQVMAGTDHFVLLAIPFFVLAGLLMETN 253 Query: 264 GMSVRLIELLQRAVGRMRGGLNVVMVMSMVLFSGISGSKMADVAAVGSVLIPAARRSRQS 323 GMS RLIELL R GR+RGGL ++ +M+ FSG+SGSK+AD+AAVG V++PA R SR+ Sbjct: 254 GMSSRLIELLLRIFGRVRGGLGLITIMATAFFSGVSGSKLADIAAVGGVVMPAVRLSRED 313 Query: 324 PGGAVALLAASAVMAETIPPCINLIILGFVANLSIGGLFVAGMLPAALMALALIAVSIIF 383 P A ALLA SAVMAETIPPC+N+II+GFVAN+SI GLF+AG++PAA++A L AV++I Sbjct: 314 PNEAAALLACSAVMAETIPPCVNMIIMGFVANISIAGLFLAGVVPAAVLAATLAAVAVIC 373 Query: 384 GKR-PAANVEAEPRAAVSGLWTGAIASFGLIFMIFFGFKSGFATATEISAFAAVYAIAVG 442 G+R A+ PRA + L GA+ + +I MI G SG AT+TE+SAFA VYA+ VG Sbjct: 374 GRRINLADALPHPRAWMP-LLGGALVALVMITMIGKGVTSGIATSTEVSAFAVVYALIVG 432 Query: 443 SLLFRELGVKSLAHCFVQSAVRSGLVLFIVAAAQSLAFILTLQQVPHAVGDLMLAISGSH 502 L FREL KS+ FV+SA + +LFIVAAA S++F LT++Q+P V D M+ + + Sbjct: 433 GLAFRELTPKSVVRVFVRSASMASSILFIVAAASSVSFALTIEQIPALVSDSMIVFAHQY 492 Query: 503 GVWLFMLLSILVLVVMGSVLEGAAALIIFGPLLLPVAVKLGIDPLHFGVVLVIAMGLGLF 562 G F+LLS+L+++V G+VLEGA ALIIFGPLL P+A +LGI+PLHFG V+V+AMGLGLF Sbjct: 493 GPTTFLLLSVLIMIVFGAVLEGAPALIIFGPLLTPIAAQLGINPLHFGTVIVVAMGLGLF 552 Query: 563 APPLGLGLYGACLIGNVPIEQTIKPIAGYLGLLLLCLLVIAFVPAISTALPHALG 617 APP+GLGL+ C I ++ +P+ YL +L L+ + VP+ S LP LG Sbjct: 553 APPIGLGLFATCAITGTEMKAVARPMLKYLLVLCTALVALILVPSFSLWLPTRLG 607 >ref|YP_439181.1| TRAP transporter DctM family protein [Burkholderia thailandensis E264] ref|ZP_05590564.1| TRAP transporter DctM family protein [Burkholderia thailandensis E264] gb|ABC35695.1| TRAP transporter, DctM subunit subfamily, putative [Burkholderia thailandensis E264] Length = 631 Score = 486 bits (1251), Expect = e-135, Method: Compositional matrix adjust. Identities = 280/595 (47%), Positives = 397/595 (66%), Gaps = 2/595 (0%) Query: 24 DAIAALLLAADLVVVCVSVLARFLFNAPVEWSDDVARGLMVGSSFFGAASALARSENLGV 83 + + A +LAAD++VV +SV+ R+ + P +W+++VA LM+ F GAA+ LARS+++G+ Sbjct: 37 EYLCAAVLAADVLVVFLSVIYRYFLHDPFDWAEEVAAALMIVLVFLGAATVLARSQHVGI 96 Query: 84 AFFVNMLPHALRRMVDAVGALLVTIIAGYVAFNAVKMGWLTTGQTSGSGLPLEWTFYPMG 143 F M P + + G ++ +AG + ++ + + GQ + SGLP YP+ Sbjct: 97 DLFRGMFPKRWQPALVHAGHWVIAGVAGNLCVSSCLLLADSYGQMTPSGLPAWINVYPLV 156 Query: 144 IGAAFMTVFAFETFCGRPLRDMAAAIVAPAVIVGLYLAWDAFAPSSVPSSQALMLIGFFL 203 IG+ FMTVFA + + ++ ++ AW+AF P L++ GF Sbjct: 157 IGSVFMTVFALANALNGARKTVLGTLIGCVLLAAAVFAWNAFVPGHALKPGFLLMAGFIG 216 Query: 204 TLFGGLPIGFALALAALIFIWVEGTLPGVIFAQQMARGIDNFVLLAIPFFILVGYLMEAN 263 L G+PIGF LA +AL++ E +LP ++++QQ+ G D+FVLLAIPFF+L G LME N Sbjct: 217 GLVLGVPIGFVLAFSALLYFLAEPSLPMLVYSQQVMAGTDHFVLLAIPFFVLAGLLMETN 276 Query: 264 GMSVRLIELLQRAVGRMRGGLNVVMVMSMVLFSGISGSKMADVAAVGSVLIPAARRSRQS 323 GMS RLIELL R GR+RGGL ++ +M+ FSG+SGSK+AD+AAVG V++PA R SR+ Sbjct: 277 GMSSRLIELLLRIFGRVRGGLGLITIMATAFFSGVSGSKLADIAAVGGVVMPAVRLSRED 336 Query: 324 PGGAVALLAASAVMAETIPPCINLIILGFVANLSIGGLFVAGMLPAALMALALIAVSIIF 383 P A ALLA SAVMAETIPPC+N+II+GFVAN+SI GLF+AG++PAA++A L AV++I Sbjct: 337 PNEAAALLACSAVMAETIPPCVNMIIMGFVANISIAGLFLAGVVPAAVLAATLAAVAVIC 396 Query: 384 GKR-PAANVEAEPRAAVSGLWTGAIASFGLIFMIFFGFKSGFATATEISAFAAVYAIAVG 442 G+R A+ PRA + L GA+ + +I MI G SG AT+TE+SAFA VYA+ VG Sbjct: 397 GRRINLADALPHPRAWMP-LLGGALVALVMITMIGKGVTSGIATSTEVSAFAVVYALIVG 455 Query: 443 SLLFRELGVKSLAHCFVQSAVRSGLVLFIVAAAQSLAFILTLQQVPHAVGDLMLAISGSH 502 L FREL KS+ FV+SA + +LFIVAAA S++F LT++Q+P V D M+ + + Sbjct: 456 GLAFRELTPKSVVRVFVRSASMASSILFIVAAASSVSFALTIEQIPALVSDSMIVFAHQY 515 Query: 503 GVWLFMLLSILVLVVMGSVLEGAAALIIFGPLLLPVAVKLGIDPLHFGVVLVIAMGLGLF 562 G F+LLS+L+++V G+VLEGA ALIIFGPLL P+A +LGI+PLHFG V+V+AMGLGLF Sbjct: 516 GPTTFLLLSVLIMIVFGAVLEGAPALIIFGPLLTPIAAQLGINPLHFGTVIVVAMGLGLF 575 Query: 563 APPLGLGLYGACLIGNVPIEQTIKPIAGYLGLLLLCLLVIAFVPAISTALPHALG 617 APP+GLGL+ C I ++ +P+ YL +L L+ + VP+ S LP LG Sbjct: 576 APPIGLGLFATCAITGTEMKAVARPMLKYLLVLCTALVALILVPSFSLWLPTRLG 630 >ref|YP_001863045.1| TRAP dicarboxylate transporter, DctM subunit [Burkholderia phymatum STM815] gb|ACC75999.1| TRAP dicarboxylate transporter, DctM subunit [Burkholderia phymatum STM815] Length = 631 Score = 483 bits (1243), Expect = e-134, Method: Compositional matrix adjust. Identities = 282/595 (47%), Positives = 404/595 (67%), Gaps = 2/595 (0%) Query: 24 DAIAALLLAADLVVVCVSVLARFLFNAPVEWSDDVARGLMVGSSFFGAASALARSENLGV 83 + + A +LAAD++VV +SV+ R+ + P +W+++VA LMV FFGAA+ LARS+++GV Sbjct: 37 EYLCAAVLAADVLVVFLSVIYRYFLHDPFDWAEEVAGALMVVLVFFGAATVLARSQHVGV 96 Query: 84 AFFVNMLPHALRRMVDAVGALLVTIIAGYVAFNAVKMGWLTTGQTSGSGLPLEWTFYPMG 143 F MLP + + +G ++ +AG + ++ + + GQ + SGLP YP+ Sbjct: 97 DLFRGMLPRRWQPALVHLGHWVIAGVAGNLCVSSCLLLVDSYGQMTPSGLPAWIKVYPLV 156 Query: 144 IGAAFMTVFAFETFCGRPLRDMAAAIVAPAVIVGLYLAWDAFAPSSVPSSQALMLIGFFL 203 IG+ FM VFA R + ++ ++ W+AF P L++ GF Sbjct: 157 IGSVFMAVFALANALNGARRTVLGTLIGCVLLAAAVFGWNAFVPGHAIKPGILLMAGFIG 216 Query: 204 TLFGGLPIGFALALAALIFIWVEGTLPGVIFAQQMARGIDNFVLLAIPFFILVGYLMEAN 263 L G+P+GF LA +AL++ E +LP ++++QQ+ G D+FVLLAIPFF+L G LME N Sbjct: 217 GLVLGVPVGFVLAFSALLYFLAEPSLPMLVYSQQVMAGTDHFVLLAIPFFVLAGLLMETN 276 Query: 264 GMSVRLIELLQRAVGRMRGGLNVVMVMSMVLFSGISGSKMADVAAVGSVLIPAARRSRQS 323 GMS RLIELL R GR+RGGL ++ +M+ FSG+SGSK+AD+AAVG V++PA R+S++ Sbjct: 277 GMSSRLIELLLRIFGRVRGGLGLITIMATAFFSGVSGSKLADIAAVGGVVMPAVRQSKED 336 Query: 324 PGGAVALLAASAVMAETIPPCINLIILGFVANLSIGGLFVAGMLPAALMALALIAVSIIF 383 P A ALLA SAVMAETIPPC+N+II+GFVAN+SI GLF+AG++PAA++A AL V++IF Sbjct: 337 PNEAAALLACSAVMAETIPPCVNMIIMGFVANISIAGLFLAGVVPAAVLAAALAIVAVIF 396 Query: 384 GKR-PAANVEAEPRAAVSGLWTGAIASFGLIFMIFFGFKSGFATATEISAFAAVYAIAVG 442 G+R A+ PRA + L GA+ + +I MI G SG AT+TE+SAFA VYA+ VG Sbjct: 397 GRRINLADALTNPRAWMP-LLGGALVALVMISMIGKGVTSGIATSTEVSAFAVVYALIVG 455 Query: 443 SLLFRELGVKSLAHCFVQSAVRSGLVLFIVAAAQSLAFILTLQQVPHAVGDLMLAISGSH 502 L FREL +S+ FV+SA + +LFIVAAA S++F LT++Q+P V D M+A + + Sbjct: 456 WLAFRELTPQSVTRVFVRSASMASSILFIVAAASSVSFALTVEQIPALVSDSMIAFAHQY 515 Query: 503 GVWLFMLLSILVLVVMGSVLEGAAALIIFGPLLLPVAVKLGIDPLHFGVVLVIAMGLGLF 562 G +F+LLS+L+++V G+VLEGA ALIIFGPLL P+A +LGI+PLHFG V+V+AMG+GLF Sbjct: 516 GPTMFLLLSVLIMIVFGAVLEGAPALIIFGPLLTPIATQLGINPLHFGTVIVVAMGMGLF 575 Query: 563 APPLGLGLYGACLIGNVPIEQTIKPIAGYLGLLLLCLLVIAFVPAISTALPHALG 617 APP+GLGL+ C I ++ +P+ YL +L + L+V+ VP+ S LP LG Sbjct: 576 APPVGLGLFATCAITGTEMKAVARPMLKYLLVLCIALVVLILVPSFSLWLPTRLG 630