BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0082.0034.p (271 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_774060.1| hypothetical protein blr7420 [Bradyrhizobium ja... 347 1e-93 ref|YP_578148.1| hypothetical protein Nham_2921 [Nitrobacter ham... 343 1e-92 ref|YP_319098.1| hypothetical protein Nwi_2493 [Nitrobacter wino... 295 3e-78 ref|ZP_01046986.1| hypothetical protein NB311A_14370 [Nitrobacte... 287 1e-75 ref|ZP_08863312.1| two-component hybrid sensor and regulator [Ru... 89 9e-16 >ref|NP_774060.1| hypothetical protein blr7420 [Bradyrhizobium japonicum USDA 110] dbj|BAC52685.1| blr7420 [Bradyrhizobium japonicum USDA 110] Length = 267 Score = 347 bits (889), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 176/271 (64%), Positives = 210/271 (77%), Gaps = 4/271 (1%) Query: 1 MRFDWRAISGPALTTITASAAFLLDRLVVAVPNPAPLFVCIVALASSISGITSGLISAAI 60 MR+ WRAI GP LT T A L DR A+P+PAPL VCIVALA ++SG S + SAA Sbjct: 1 MRYGWRAICGPVLTAATLLLAILFDR---AIPSPAPLLVCIVALAGALSGFASAITSAAF 57 Query: 61 AVAASALFFLDHRALPGYDTADVARMLMLAATAAGTAVITGMLRQKWIDAFAADQQHHAT 120 AV + L HRA+P TAD+ ++ +LA T AGTA I+G++R++ + FAA++Q HAT Sbjct: 58 AVTGTVLLLFFHRAMP-LATADLVQLGLLAVTTAGTAAISGLMRERLLGTFAAERQSHAT 116 Query: 121 AERLAAALDQVDIGIVLLDADTRAEFINRAFRDYFALSDAQAESKPPFVALMYHGRDTGA 180 A RL+AALDQVDIGIVLLDA+TRAEFINRAFRDYFA+ D A+ KPPFVALMYHGRDTGA Sbjct: 117 AARLSAALDQVDIGIVLLDAETRAEFINRAFRDYFAVPDDIADGKPPFVALMYHGRDTGA 176 Query: 181 FELPEDELSAFIAERIAMMRAGDSTPINLNLADGQVLRFSCTALPDGGRMLSYTPVTDLV 240 FELPEDEL+ FIA+R+ M+R GD+TPIN+ L G+VLRF C ALPDGGRMLSYTPVTDLV Sbjct: 177 FELPEDELATFIAQRMEMVRIGDATPINIALRSGEVLRFVCAALPDGGRMLSYTPVTDLV 236 Query: 241 RHTDDPAKADEYRAQRAGRERRLARLLRAAE 271 RHTD P++AD YR+ R RRL R LRAAE Sbjct: 237 RHTDAPSRADYYRSLRDPTGRRLIRHLRAAE 267 >ref|YP_578148.1| hypothetical protein Nham_2921 [Nitrobacter hamburgensis X14] gb|ABE63688.1| conserved hypothetical protein [Nitrobacter hamburgensis X14] Length = 266 Score = 343 bits (881), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 182/271 (67%), Positives = 212/271 (78%), Gaps = 5/271 (1%) Query: 1 MRFDWRAISGPALTTITASAAFLLDRLVVAVPNPAPLFVCIVALASSISGITSGLISAAI 60 MRFDWR I GPAL T+ A A+ +DR VVA+P+ L+VC+VALA+S+SG TSGLISA I Sbjct: 1 MRFDWRTIIGPALATLVAIASIFVDRNVVAIPSA--LYVCVVALAASLSGTTSGLISAGI 58 Query: 61 AVAASALFFLDHRALPGYDTADVARMLMLAATAAGTAVITGMLRQKWIDAFAADQQHHAT 120 AV ASAL H A + +++LA TA GTAVITG+LR++ + A ++ HAT Sbjct: 59 AVLASALLMTGHDA--AATLPSLLHLVLLALTAGGTAVITGLLRRRMVSALRW-RERHAT 115 Query: 121 AERLAAALDQVDIGIVLLDADTRAEFINRAFRDYFALSDAQAESKPPFVALMYHGRDTGA 180 A RL+AALDQ+DIG+VLLDADTRAEFINRAFR YF+L D +A+SKPPF+ALMYHGRDTGA Sbjct: 116 AARLSAALDQIDIGVVLLDADTRAEFINRAFRTYFSLPDEKADSKPPFIALMYHGRDTGA 175 Query: 181 FELPEDELSAFIAERIAMMRAGDSTPINLNLADGQVLRFSCTALPDGGRMLSYTPVTDLV 240 +ELPEDELS FIAER MMRAGD TPIN+ L DGQVLRFSCTALPDGGRMLSYTPVT+LV Sbjct: 176 YELPEDELSHFIAERTRMMRAGDQTPINIKLRDGQVLRFSCTALPDGGRMLSYTPVTELV 235 Query: 241 RHTDDPAKADEYRAQRAGRERRLARLLRAAE 271 RHTDDPA AD Y + R G R R LRAAE Sbjct: 236 RHTDDPADADYYLSLRGGGHRPRIRHLRAAE 266 >ref|YP_319098.1| hypothetical protein Nwi_2493 [Nitrobacter winogradskyi Nb-255] gb|ABA05746.1| conserved hypothetical protein [Nitrobacter winogradskyi Nb-255] Length = 270 Score = 295 bits (756), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 164/271 (60%), Positives = 200/271 (73%), Gaps = 1/271 (0%) Query: 1 MRFDWRAISGPALTTITASAAFLLDRLVVAVPNPAPLFVCIVALASSISGITSGLISAAI 60 MR DWR + GPAL + A A+ D + AVPN + L++C+VALA S+ G SGLISA I Sbjct: 1 MRIDWRMMLGPALAMLIAGASIYADHELAAVPNLSALYICVVALAGSLGGTASGLISAGI 60 Query: 61 AVAASALFFLDHRALPGYDTADVARMLMLAATAAGTAVITGMLRQKWIDAFAADQQHHAT 120 AV ASA F D A + + + + +LA A G A+ITG+LR + ++A +++ HAT Sbjct: 61 AVLASAGFLGDDNAAVA-EGSTLLHLGLLAPAAGGAALITGLLRSRMMNALERERERHAT 119 Query: 121 AERLAAALDQVDIGIVLLDADTRAEFINRAFRDYFALSDAQAESKPPFVALMYHGRDTGA 180 A RL AALDQ IGIV+LDADTRAEFINRAFR YF+L D +A+S+PPF+ALMYHGRDTGA Sbjct: 120 AARLTAALDQTGIGIVMLDADTRAEFINRAFRHYFSLPDEKADSRPPFIALMYHGRDTGA 179 Query: 181 FELPEDELSAFIAERIAMMRAGDSTPINLNLADGQVLRFSCTALPDGGRMLSYTPVTDLV 240 +ELP+DELS FIAER+ M+RAGD TPIN+ L +GQVLRF CTALPDGGRMLSYTPVTDL+ Sbjct: 180 YELPQDELSHFIAERVRMVRAGDPTPINIKLRNGQVLRFICTALPDGGRMLSYTPVTDLI 239 Query: 241 RHTDDPAKADEYRAQRAGRERRLARLLRAAE 271 R TDDPA AD Y + R G R LRAAE Sbjct: 240 RRTDDPADADYYLSLRGGDRRLPVHRLRAAE 270 >ref|ZP_01046986.1| hypothetical protein NB311A_14370 [Nitrobacter sp. Nb-311A] gb|EAQ35088.1| hypothetical protein NB311A_14370 [Nitrobacter sp. Nb-311A] Length = 270 Score = 287 bits (735), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 159/271 (58%), Positives = 194/271 (71%), Gaps = 1/271 (0%) Query: 1 MRFDWRAISGPALTTITASAAFLLDRLVVAVPNPAPLFVCIVALASSISGITSGLISAAI 60 MR DWR + GPAL + A A+ R + A PN + L+VCIVA A S+ G SGLISAAI Sbjct: 1 MRIDWRMMLGPALAMLLAGASTYAGRDLAAFPNLSALYVCIVAFAGSLGGTASGLISAAI 60 Query: 61 AVAASALFFLDHRALPGYDTADVARMLMLAATAAGTAVITGMLRQKWIDAFAADQQHHAT 120 A+ ASA F + A D + V + +L A GTA+ITG+LR + ++ +++ HAT Sbjct: 61 AILASAGFLREDNAAVA-DGSIVLHLGLLTLAAVGTALITGLLRLRMANSLKQERERHAT 119 Query: 121 AERLAAALDQVDIGIVLLDADTRAEFINRAFRDYFALSDAQAESKPPFVALMYHGRDTGA 180 A RL+AAL+ DIGIV+LDADTRAEFINRAFR YF+L D +A+SKPPF+ALMYHGRDTGA Sbjct: 120 AARLSAALNLTDIGIVMLDADTRAEFINRAFRHYFSLPDEKADSKPPFIALMYHGRDTGA 179 Query: 181 FELPEDELSAFIAERIAMMRAGDSTPINLNLADGQVLRFSCTALPDGGRMLSYTPVTDLV 240 +ELP+DELS FIAER+ M+RAGD TPIN+ L G VLRF CTALPDG RMLSYTPVTDL+ Sbjct: 180 YELPQDELSHFIAERVGMVRAGDPTPINIKLRTGAVLRFVCTALPDGSRMLSYTPVTDLI 239 Query: 241 RHTDDPAKADEYRAQRAGRERRLARLLRAAE 271 R TD+PA D Y + R R LRAAE Sbjct: 240 RRTDNPADTDYYLSLRGNGRRLPIHRLRAAE 270 >ref|ZP_08863312.1| two-component hybrid sensor and regulator [Ruegeria sp. TW15] Length = 1194 Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 45/129 (34%), Positives = 69/129 (53%) Query: 113 ADQQHHATAERLAAALDQVDIGIVLLDADTRAEFINRAFRDYFALSDAQAESKPPFVALM 172 AD+ A A +D VD GI+ + D RA INRAF + + + +P L+ Sbjct: 774 ADEALKAALAEFNAVIDHVDYGILFMGPDLRARIINRAFARIWNIDQKFIDQRPTMQELI 833 Query: 173 YHGRDTGAFELPEDELSAFIAERIAMMRAGDSTPINLNLADGQVLRFSCTALPDGGRMLS 232 + + TG +++ + +++ R+ +RAG+ P L ADG L F C LPDGGRML+ Sbjct: 834 EYNKGTGVYDVAPKDWDDWLSMRVEAIRAGNMPPGELCRADGMTLSFQCVDLPDGGRMLT 893 Query: 233 YTPVTDLVR 241 Y +T+L R Sbjct: 894 YFDITELKR 902 Score = 44.7 bits (104), Expect = 0.017, Method: Compositional matrix adjust. Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 11/131 (8%) Query: 123 RLAAALDQVDIGIVLLDADTRAEFINRAFRDYFA-------LSDAQAESKPPFVALMYHG 175 RL A++ + G++L+ + R E N + F+ LS+ E + F ++ +G Sbjct: 395 RLLGAIETIADGLLLVGPENRVELFNDRYVQIFSDAAGGADLSNLIYEGRE-FFDMIRNG 453 Query: 176 RDTGAFELPEDELSAFIA-ERIAMMRAGDSTPINLNLADGQVLRFSCTALPDGGRMLSYT 234 + G F D + +IA R+A + L L +G + + LPDGGR++ Y Sbjct: 454 YELGMFTEHPDGVDGWIAARRVAWEKP--KANWELELGNGVWIMLNERRLPDGGRIMVYN 511 Query: 235 PVTDLVRHTDD 245 +T+ R D Sbjct: 512 DITEFKRREAD 522 Score = 43.5 bits (101), Expect = 0.034, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 52/122 (42%), Gaps = 1/122 (0%) Query: 118 HATAERLAAALDQVDIGIVLLDADTRAEFINRAFRDYFALSDAQAESKPPFVALMYHGRD 177 A +R A++ + G L DA+ R N +R Y + + F ++ G Sbjct: 524 QAARQRFEDAIEAISSGFALWDAEDRLAVCNERYRTYMSELADKVVPGVKFEEIIGAGIK 583 Query: 178 TGAFELPEDELSAFIAERIAMMRAGDSTPINLNLADGQVLRFSCTALPDGGRMLSYTPVT 237 G F L E E+ ++ ERIA R S L G L+ + DGG + YT +T Sbjct: 584 RGLFPLSEGEVEGYL-ERIAEKRMKASGEPREQLVAGYWLQITDHRTSDGGIVSIYTDIT 642 Query: 238 DL 239 +L Sbjct: 643 EL 644 Score = 35.8 bits (81), Expect = 7.9, Method: Compositional matrix adjust. Identities = 30/126 (23%), Positives = 52/126 (41%), Gaps = 4/126 (3%) Query: 112 AADQQHHATAERLAAALDQVDIGIVLLDADTRAEFINRAFRDYFALSDAQAESKPPFVAL 171 ADQ+ + A+R + +D+G+ + + R + N AFR+ L Sbjct: 3 GADQK--SQADRYEEGIALLDVGVGIFNDALRLVYCNPAFREMRRYPQELCRRGVSLEDL 60 Query: 172 MYHGRDTGAFELPEDELSAFIAERIAMMRAGDSTPINLNLADGQVLRFSCTALPDGGRML 231 ++ + G F +A+R+ + A + +ADGQVL S GG M+ Sbjct: 61 LHFNAERGDF--GAGNTDRLVADRMNEIGASGERALEHEMADGQVLAISYRRTASGGTMV 118 Query: 232 SYTPVT 237 +Y T Sbjct: 119 TYQDRT 124