BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0082.0020.p (280 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_774052.1| shikimate 5-dehydrogenase [Bradyrhizobium japon... 429 e-118 ref|YP_576416.1| shikimate 5-dehydrogenase [Nitrobacter hamburge... 406 e-111 ref|YP_001207832.1| shikimate dehydrogenase [Bradyrhizobium sp. ... 405 e-111 ref|YP_319579.1| shikimate/quinate 5-dehydrogenase [Nitrobacter ... 402 e-110 ref|YP_001237921.1| shikimate dehydrogenase [Bradyrhizobium sp. ... 400 e-109 >ref|NP_774052.1| shikimate 5-dehydrogenase [Bradyrhizobium japonicum USDA 110] dbj|BAC52677.1| shikimate 5-dehydrogenase [Bradyrhizobium japonicum USDA 110] Length = 329 Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust. Identities = 213/276 (77%), Positives = 233/276 (84%), Gaps = 6/276 (2%) Query: 11 SKTRAACLIGWPAAHSRSPLIHHYWLRTLGIEGGYVIEAVPPEDFKDFLFRLSLRGFVGA 70 +K AACLIGWPAAHSRSPLIHHYWLRTLGI GGYVIEAVPPED +DF+ RLSLRGFVGA Sbjct: 54 TKAPAACLIGWPAAHSRSPLIHHYWLRTLGIAGGYVIEAVPPEDLRDFVLRLSLRGFVGA 113 Query: 71 NVTLPHKERALALSAPDERARAVGAANTLWFADGELRSTNTDVEGFINNLDACAPGWDKT 130 NVT+PHKE LALS PD RA+AVGAANTLWF DGELRSTNTDVEGFINNLDA APGWD Sbjct: 114 NVTIPHKEGVLALSTPDARAKAVGAANTLWFEDGELRSTNTDVEGFINNLDASAPGWDTA 173 Query: 131 EDX------GAARAVVFGLIERGIARVHLVNRTIDRARALADQFDARVHPATWDTVSELL 184 E+ G+ARAVVFGL ERGI R+HL NRTI RA LA QF V P TWD + ++L Sbjct: 174 EEALVLGAGGSARAVVFGLRERGIKRIHLANRTIARAETLAKQFGPNVQPVTWDGIDDVL 233 Query: 185 PRAGLLVNATSLGQHGQPALEVDVGLLPQNAVVSDIVYVPLVTPLLAAAEARGLKTADGL 244 PRA LLVN TSLG GQP+L+VDV LPQ AVV+D+VYVPLVTPLLAAA+ARGL+TADGL Sbjct: 234 PRAKLLVNTTSLGMRGQPSLDVDVARLPQAAVVADLVYVPLVTPLLAAAKARGLRTADGL 293 Query: 245 GMLLHQAVRGFELWFGQRPQVTAELRGLVEADLTKT 280 GMLLHQAVRGFELWFG+RP+VT ELR LVEADLTK+ Sbjct: 294 GMLLHQAVRGFELWFGRRPRVTDELRALVEADLTKS 329 >ref|YP_576416.1| shikimate 5-dehydrogenase [Nitrobacter hamburgensis X14] sp|Q1QP91.1|AROE_NITHX RecName: Full=Shikimate dehydrogenase gb|ABE61956.1| shikimate dehydrogenase [Nitrobacter hamburgensis X14] Length = 285 Score = 406 bits (1043), Expect = e-111, Method: Compositional matrix adjust. Identities = 200/278 (71%), Positives = 230/278 (82%), Gaps = 6/278 (2%) Query: 6 IMTSSSKTRAACLIGWPAAHSRSPLIHHYWLRTLGIEGGYVIEAVPPEDFKDFLFRLSLR 65 +MT+ +K RAACLIGWPAAHSRSPLIHHYWLR GI GGY IEA+PPE +F+ LS Sbjct: 1 MMTAETKGRAACLIGWPAAHSRSPLIHHYWLRLHGIAGGYNIEAIPPEGLAEFIMHLSTH 60 Query: 66 GFVGANVTLPHKERALALSAPDERARAVGAANTLWFADGELRSTNTDVEGFINNLDACAP 125 GFVGANVT+PHKERAL L+APDERARA+GAANTL++ LRSTNTDVEGFI NLDA AP Sbjct: 61 GFVGANVTIPHKERALQLTAPDERARAIGAANTLYYDGKTLRSTNTDVEGFIGNLDAAAP 120 Query: 126 GWDKTEDX------GAARAVVFGLIERGIARVHLVNRTIDRARALADQFDARVHPATWDT 179 GWD+T D G++RAVVFGLIERGI R+HLVNRT++RA+ALADQF A V P W Sbjct: 121 GWDRTGDALVLGAGGSSRAVVFGLIERGIKRIHLVNRTMERAQALADQFGATVMPLAWSG 180 Query: 180 VSELLPRAGLLVNATSLGQHGQPALEVDVGLLPQNAVVSDIVYVPLVTPLLAAAEARGLK 239 + ++LPRAGLLVN TSLG GQP L++++ LLP +AVV+D+VYVPL TPLLAAA ARGL+ Sbjct: 181 LGDVLPRAGLLVNTTSLGMKGQPPLDIELPLLPLDAVVADLVYVPLETPLLAAARARGLR 240 Query: 240 TADGLGMLLHQAVRGFELWFGQRPQVTAELRGLVEADL 277 TADGLGMLLHQAVRGFELWFGQRP V+ ELR LVEADL Sbjct: 241 TADGLGMLLHQAVRGFELWFGQRPAVSPELRALVEADL 278 >ref|YP_001207832.1| shikimate dehydrogenase [Bradyrhizobium sp. ORS 278] emb|CAL79617.1| Shikimate dehydrogenase [Bradyrhizobium sp. ORS 278] Length = 288 Score = 405 bits (1042), Expect = e-111, Method: Compositional matrix adjust. Identities = 204/285 (71%), Positives = 229/285 (80%), Gaps = 6/285 (2%) Query: 1 LADVTIMTSSSKTRAACLIGWPAAHSRSPLIHHYWLRTLGIEGGYVIEAVPPEDFKDFLF 60 L+DVT MT+++K AACLIGWPAAHSRSPLIHH+WL LGI GGY IEAVPPE+ +F+ Sbjct: 3 LSDVTAMTAAAKIPAACLIGWPAAHSRSPLIHHHWLHQLGISGGYTIEAVPPEELANFVM 62 Query: 61 RLSLRGFVGANVTLPHKERALALSAPDERARAVGAANTLWFADGELRSTNTDVEGFINNL 120 L RGFVGANVT+PHKER L L+ PD RARAVGAANTLW+ G LR+TNTDVEGFI NL Sbjct: 63 HLHHRGFVGANVTIPHKERVLELAEPDARARAVGAANTLWYERGVLRATNTDVEGFIGNL 122 Query: 121 DACAPGWDKTEDX------GAARAVVFGLIERGIARVHLVNRTIDRARALADQFDARVHP 174 DA APGWD+T + GAARAVVFGL+ERGI RVH++NRT RA+ALADQF +RV Sbjct: 123 DAVAPGWDRTNEALVLGSGGAARAVVFGLLERGIGRVHVINRTAARAQALADQFGSRVVA 182 Query: 175 ATWDTVSELLPRAGLLVNATSLGQHGQPALEVDVGLLPQNAVVSDIVYVPLVTPLLAAAE 234 WD V LLP AGL VN T+LG HGQP L +DV LL +AVV+DIVYVPL T LL AA Sbjct: 183 EGWDRVGALLPGAGLFVNTTALGMHGQPPLALDVDLLSPHAVVADIVYVPLETQLLGAAR 242 Query: 235 ARGLKTADGLGMLLHQAVRGFELWFGQRPQVTAELRGLVEADLTK 279 ARGL+TADGLGMLLHQAVRGFELWFG+RPQVT ELR LVEADLTK Sbjct: 243 ARGLRTADGLGMLLHQAVRGFELWFGRRPQVTPELRALVEADLTK 287 >ref|YP_319579.1| shikimate/quinate 5-dehydrogenase [Nitrobacter winogradskyi Nb-255] sp|Q3SNB4.1|AROE_NITWN RecName: Full=Shikimate dehydrogenase gb|ABA06227.1| shikimate dehydrogenase [Nitrobacter winogradskyi Nb-255] Length = 279 Score = 402 bits (1033), Expect = e-110, Method: Compositional matrix adjust. Identities = 196/278 (70%), Positives = 227/278 (81%), Gaps = 6/278 (2%) Query: 6 IMTSSSKTRAACLIGWPAAHSRSPLIHHYWLRTLGIEGGYVIEAVPPEDFKDFLFRLSLR 65 +MT+ + RAACLIGWPAAHSRSPLIHHYWLR GI GGY IEA+PPE F +F+ LS Sbjct: 1 MMTAETTGRAACLIGWPAAHSRSPLIHHYWLRLHGITGGYSIEAIPPEGFAEFVMHLSTH 60 Query: 66 GFVGANVTLPHKERALALSAPDERARAVGAANTLWFADGELRSTNTDVEGFINNLDACAP 125 GF GANVT+PHKERAL L+ PD+RARAVGAANTL++ LRSTNTDVEGFI+NLD AP Sbjct: 61 GFAGANVTIPHKERALQLTEPDDRARAVGAANTLYYEGAVLRSTNTDVEGFISNLDVAAP 120 Query: 126 GWDKTEDX------GAARAVVFGLIERGIARVHLVNRTIDRARALADQFDARVHPATWDT 179 WD+T D GA+RAVVFGL+ERGI R+HL NRT++RAR LADQF A V PA W+T Sbjct: 121 SWDRTGDALVLGAGGASRAVVFGLVERGIGRIHLANRTVERARVLADQFGATVIPAAWNT 180 Query: 180 VSELLPRAGLLVNATSLGQHGQPALEVDVGLLPQNAVVSDIVYVPLVTPLLAAAEARGLK 239 + +LLPR GLLVN TSLG GQP L++++ LLP++AVV+D+VYVPL TPLL+AA ARGL+ Sbjct: 181 LGDLLPRVGLLVNTTSLGMKGQPPLDIELALLPRDAVVADLVYVPLETPLLSAARARGLR 240 Query: 240 TADGLGMLLHQAVRGFELWFGQRPQVTAELRGLVEADL 277 TADGLGMLLHQAVRGFELWFG RP VT ELR LVEADL Sbjct: 241 TADGLGMLLHQAVRGFELWFGLRPAVTQELRALVEADL 278 >ref|YP_001237921.1| shikimate dehydrogenase [Bradyrhizobium sp. BTAi1] gb|ABQ34015.1| shikimate dehydrogenase [Bradyrhizobium sp. BTAi1] Length = 280 Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust. Identities = 199/277 (71%), Positives = 224/277 (80%), Gaps = 6/277 (2%) Query: 7 MTSSSKTRAACLIGWPAAHSRSPLIHHYWLRTLGIEGGYVIEAVPPEDFKDFLFRLSLRG 66 MT ++K RAACLIGWPAAHSRSPLIHH+WL LGI GGY IEAVPPE+ DF+ L RG Sbjct: 1 MTLAAKPRAACLIGWPAAHSRSPLIHHHWLHKLGIAGGYTIEAVPPEELADFVTHLHGRG 60 Query: 67 FVGANVTLPHKERALALSAPDERARAVGAANTLWFADGELRSTNTDVEGFINNLDACAPG 126 FVGANVT+PHKER L L+ PD RARAVGAANTLW+ G LR+TNTDVEGF+ NLDA APG Sbjct: 61 FVGANVTIPHKERVLELTKPDSRARAVGAANTLWYEHGILRATNTDVEGFVGNLDAAAPG 120 Query: 127 WDKTE------DXGAARAVVFGLIERGIARVHLVNRTIDRARALADQFDARVHPATWDTV 180 WD+T+ G+ARAVVFGL+ERGI RVH++NRT RA+ALADQF RV W+ V Sbjct: 121 WDRTDVALVLGSGGSARAVVFGLLERGIGRVHVINRTAARAQALADQFGPRVVAGGWEQV 180 Query: 181 SELLPRAGLLVNATSLGQHGQPALEVDVGLLPQNAVVSDIVYVPLVTPLLAAAEARGLKT 240 S LLP+AGLLVN TSLG HGQP L +++G LP+ AVV DIVYVPL T LL AA ARGL+T Sbjct: 181 SALLPQAGLLVNTTSLGMHGQPPLAIEIGRLPEQAVVVDIVYVPLETQLLVAARARGLRT 240 Query: 241 ADGLGMLLHQAVRGFELWFGQRPQVTAELRGLVEADL 277 ADGLGMLLHQAVRGFELWFG+RPQVT ELR LVEADL Sbjct: 241 ADGLGMLLHQAVRGFELWFGERPQVTPELRALVEADL 277