BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0082.0012.p (291 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001237928.1| hypothetical protein BBta_1819 [Bradyrhizobi... 305 4e-81 ref|NP_774045.1| hypothetical protein bll7405 [Bradyrhizobium ja... 270 2e-70 ref|YP_533955.1| hypothetical protein RPC_4110 [Rhodopseudomonas... 184 2e-44 ref|YP_576424.1| hypothetical protein Nham_1117 [Nitrobacter ham... 182 5e-44 ref|YP_783070.1| hypothetical protein RPE_4165 [Rhodopseudomonas... 181 1e-43 >ref|YP_001237928.1| hypothetical protein BBta_1819 [Bradyrhizobium sp. BTAi1] gb|ABQ34022.1| putative exported protein of unknown function [Bradyrhizobium sp. BTAi1] Length = 302 Score = 305 bits (782), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 153/292 (52%), Positives = 199/292 (68%), Gaps = 3/292 (1%) Query: 1 LVLAAMMIGTVTGAQAADLPDFPILRGSYVDAPSRS-GNWEGWYVGGQIGYTSGDIDFSH 59 LV+A + G V+ AQAAD+PD P+LRG + + + NW+G+YVGGQ GY + D+DFS Sbjct: 13 LVMAVSVFGMVSAAQAADMPDLPVLRGGLTEGLNGARANWDGYYVGGQFGYGTSDMDFSR 72 Query: 60 APSAMTSFMLRESVLADPVSGWALLPKNHAQSNGFGAFVGRNWQWDDVVLGVEANYNYLN 119 + +++T+F+ R SVL P S W++L KNH Q + FG +VGRN+QW+D V G+E NYNY+N Sbjct: 73 SAASLTNFIFRNSVLQTPTSTWSVLNKNHVQGSSFGVYVGRNFQWEDTVWGIEVNYNYMN 132 Query: 120 GLESSAGDSMTRQIVNPKGETPPSGHTYTYNTTLSGSAALQVKDVTTFRGRAGWAAGNFL 179 + SS+G SM IVNP GET + T TY+T++ +AALQ+KDV T RGR GWAA NFL Sbjct: 133 RMVSSSGSSMALNIVNPSGETVAANETRTYSTSVQAAAALQIKDVVTLRGRVGWAADNFL 192 Query: 180 PYMFGGVAVGRMSVSRSATVSFDKYDAWAETQTVGNNTVTIQHNDYLGSGSAAQTEQRVN 239 PY+FGG+AVGRM SR AT + D + QT G ++ YL S S E R N Sbjct: 193 PYVFGGLAVGRMETSRVATTNVYLTDTFVN-QTTG-AIISQTGPSYLPSVSRTYGESRTN 250 Query: 240 NYAIGWTAGLGLEYCVVGGLFLRGEWEYVRFAAVKNIAVDMNSFRVGAGYKF 291 ++ GWT GLG EY + GGLF RGEWEYV+F VK+ AV +NSFR G GYKF Sbjct: 251 SFVGGWTGGLGFEYMMWGGLFARGEWEYVKFMTVKDTAVTLNSFRAGVGYKF 302 >ref|NP_774045.1| hypothetical protein bll7405 [Bradyrhizobium japonicum USDA 110] dbj|BAC52670.1| bll7405 [Bradyrhizobium japonicum USDA 110] Length = 298 Score = 270 bits (690), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 139/295 (47%), Positives = 188/295 (63%), Gaps = 4/295 (1%) Query: 1 LVLAAMMIGTVTGAQAADLPDFPILRGSYVDAPSR-SGNWEGWYVGGQIGYTSGDIDFSH 59 L L A + G+V+ A AAD+PD P+LRG + D S+ S W+G YVG GYT+ DFS Sbjct: 4 LWLVAAVFGSVSAAHAADMPDLPVLRGGFTDGLSKTSHRWDGAYVGVNGGYTADATDFSQ 63 Query: 60 APSAMTSFMLRESVLADPVSGWALLPKNHAQSNGFGAFVGRNWQWDDVVLGVEANYNYLN 119 + +T+F+ R+SVL P + W+L+ K + QS FGAFVGRNWQW D +LG+E Y+Y N Sbjct: 64 SVVGLTNFIFRDSVLQQPTANWSLMNKTNTQSTNFGAFVGRNWQWYDAILGLEGTYSYFN 123 Query: 120 GLESSAGDSMTRQIVNPKGETPPSGHTYTYNTTLSGSAALQVKDVTTFRGRAGWAAGNFL 179 L + + + IVNP G+ + T Y+ TL+G+AA +VKD+ T RGR GW G+F+ Sbjct: 124 NLSTLTSGTNSLTIVNPPGDAHAANVTDNYDVTLTGTAAAKVKDMITLRGRVGWDGGDFM 183 Query: 180 PYMFGGVAVGRMSVSRSATVSFDKYDAWAETQTVGNNTVTIQH---NDYLGSGSAAQTEQ 236 PY F G AVGRM VSRS T D T VG T+T + + S +QT++ Sbjct: 184 PYAFMGAAVGRMDVSRSVTSIVDLRQDVTNTIVVGGATLTTTTFGAPQAVPAQSQSQTQR 243 Query: 237 RVNNYAIGWTAGLGLEYCVVGGLFLRGEWEYVRFAAVKNIAVDMNSFRVGAGYKF 291 R N +A+GWTAGLG+EYC+ GLF R E+EYV+F+ V N +V +N+ RVG GYKF Sbjct: 244 RTNAFAVGWTAGLGVEYCIWDGLFARVEYEYVKFSPVMNTSVTLNNARVGLGYKF 298 >ref|YP_533955.1| hypothetical protein RPC_4110 [Rhodopseudomonas palustris BisB18] gb|ABD89636.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18] Length = 274 Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 112/295 (37%), Positives = 170/295 (57%), Gaps = 28/295 (9%) Query: 1 LVLAAMMIGTVTGAQAADLPDFPILRGSYVDAPSRSGNWEGWYVGGQIGYTSGDIDFSHA 60 +V+ AM++ T AQ A D P LRGS +D PSR NWEG+Y+GGQ Y + D++F+ A Sbjct: 4 VVVGAMLL---TVAQEAYAADMPFLRGSVLDGPSRVVNWEGFYIGGQASYGTSDMNFTDA 60 Query: 61 PSAMTSFMLRESVL--ADPVSGWALLPKNHAQSNGFGAFVGRNWQWDDVVLGVEANYNY- 117 + + +++ A VS W L K A G+G FVG NWQW DVVLG+EANY + Sbjct: 61 TRGLAEQAMTNTLVNSAMQVSDWPTLGKQSAHGQGYGGFVGYNWQWTDVVLGLEANYIHG 120 Query: 118 -LNGLESSAGDSMTRQIVNPKGETPPSGHTYTYNTTLSGSAALQVKDVTTFRGRAGWAAG 176 +G +S+ + MTR + G + H Y + +A++ + D+ + R RAGW+ G Sbjct: 121 KFDGSDSNVANPMTRCM----GLSDSLYHCAGYRS----AASIVINDLGSARARAGWSVG 172 Query: 177 NFLPYMFGGVAVGRMSVSRSATVSFDKYDAWAETQTVGNNTVTIQHNDYLGSGSAAQTEQ 236 +FLPYMFGGV++G+ + RSA++ Y A + +G Y+G + + Sbjct: 173 SFLPYMFGGVSLGQADIVRSASIRDTLYTA---SPALGGT--------YVGYNQFDRAKV 221 Query: 237 RVNNYAIGWTAGLGLEYCVVGGLFLRGEWEYVRFAAVKNIAVDMNSFRVGAGYKF 291 + ++ G+ GLG++ V GGLF+R EWEY++FAA + +V ++ R G GYKF Sbjct: 222 QNGHFIYGYGGGLGVDMMVFGGLFVRAEWEYLKFAAPVDTSV--STVRAGVGYKF 274 >ref|YP_576424.1| hypothetical protein Nham_1117 [Nitrobacter hamburgensis X14] gb|ABE61964.1| conserved hypothetical protein [Nitrobacter hamburgensis X14] Length = 274 Score = 182 bits (463), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 115/294 (39%), Positives = 166/294 (56%), Gaps = 26/294 (8%) Query: 1 LVLAAMMIGTVTGAQAADLPDFPILRGSYVDA-PSRSGNWEGWYVGGQIGYTSGDIDFSH 59 L+LAA+M GT GA AAD+PD PILRGS D + W+G+YVGGQ G D++F+ Sbjct: 4 LLLAAVMCGTAHGAYAADMPDLPILRGSLSDGFGTVRTVWQGYYVGGQAGVGESDMNFTG 63 Query: 60 APSAMTSFMLRESVLADP--VSGWALLPKNHAQSNGFGAFVGRNWQWDDVVLGVEANYNY 117 A + + +L + + + VS W L K + +G+G FVG N QWDDVV+GVEANY + Sbjct: 64 ATRNVAARLLSGTAIENSGQVSSWPLGGKASVRGDGWGGFVGYNSQWDDVVIGVEANYMH 123 Query: 118 LNGLESSAGDSMTRQIVNPKGETPPSGHTYTYNTTLSGSAALQVKDVTTFRGRAGWAAGN 177 S DSM+R + G YT T +A + + D+ T R RAG+ G Sbjct: 124 -GKFGGSRSDSMSRFFTDSLG--------YTDGVTYQSTATMSISDMGTLRARAGYVVGA 174 Query: 178 FLPYMFGGVAVGRMSVSRSATVSFDKYDAWAETQTVGNNTVTIQHNDYLGSGSAAQTEQR 237 FLPYMFGGVA+G+ + RSA + + + A G V + + T+ + Sbjct: 175 FLPYMFGGVALGQADIVRSAHIFGTQVNPAAAP---GFTNVPF---------NVSGTDGK 222 Query: 238 VNNYAIGWTAGLGLEYCVVGGLFLRGEWEYVRFAAVKNIAVDMNSFRVGAGYKF 291 ++ G++AG+GL+ ++GGLF R EWEY+RF + +I ++N+ R G GYKF Sbjct: 223 YSHLIYGYSAGVGLDVNLIGGLFARVEWEYIRFTS--SIDTNVNTVRAGVGYKF 274 >ref|YP_783070.1| hypothetical protein RPE_4165 [Rhodopseudomonas palustris BisA53] gb|ABJ08090.1| conserved hypothetical protein [Rhodopseudomonas palustris BisA53] Length = 263 Score = 181 bits (459), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 113/293 (38%), Positives = 166/293 (56%), Gaps = 35/293 (11%) Query: 1 LVLAAMMIGTVTGAQAADLPDFPILRGSYVDAPSRSGNWEGWYVGGQIGYTSGDIDFSHA 60 L AA+ +G AQ A+ D P LRG+ D P R NWEG+YVGG GY + D++F++A Sbjct: 4 LAGAAVALGLGLAAQGAEAADMPFLRGALFDGPRRHVNWEGFYVGGHAGYGTSDMNFTNA 63 Query: 61 PSAMTSFMLRESVLAD--PVSGWALLPKNHAQSNGFGAFVGRNWQWDDVVLGVEANYNYL 118 + + +L +V+ VS W +L K A +G+G FVG N QWD VVLG+EANY + Sbjct: 64 TEGVVAKLLDNTVVESLLGVSSWPVLDKRSAHGHGYGGFVGYNAQWDSVVLGIEANYLHG 123 Query: 119 NGLESSAGDSMTRQIVNPKGETPPSGHTYTYNTTLSGSAALQVKDVTTFRGRAGWAAGNF 178 N ++ G SM R++++ Y T + SA++ V+DV + R RAG+A F Sbjct: 124 NFGGATTG-SMARELISGG---------INYGATNTSSASINVRDVGSARLRAGYAWKGF 173 Query: 179 LPYMFGGVAVGRMSVSRSATVSFDKYDAWAETQTVGNNTVTIQHNDYLGSGSAAQTEQRV 238 LPYMFGGV++G+ + R+AT+ + G V SAAQ + Sbjct: 174 LPYMFGGVSLGQADIIRAATI---------RGRDAGGTWVL----------SAAQAQH-- 212 Query: 239 NNYAIGWTAGLGLEYCVVGGLFLRGEWEYVRFAAVKNIAVDMNSFRVGAGYKF 291 ++ G+ G+G++ +VGGLFLR EWEY++FAA + +V ++ R G GYKF Sbjct: 213 GHFIYGYAGGVGIDMMLVGGLFLRAEWEYLKFAAPVDTSV--STVRAGLGYKF 263