BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0081.0011.p (314 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value sp|P50323.1|NODD1_BRAEL RecName: Full=Nodulation protein D 1 >gi... 631 e-179 sp|P04682.1|NODD_BRASP RecName: Full=Nodulation protein D >gi|77... 583 e-164 dbj|BAB70606.1| nodulation regulator protein [Bradyrhizobium elk... 581 e-164 ref|NP_768663.1| transcriptional regulator [Bradyrhizobium japon... 577 e-163 dbj|BAB70602.1| nodulation regulator protein [Bradyrhizobium sp.... 543 e-153 >sp|P50323.1|NODD1_BRAEL RecName: Full=Nodulation protein D 1 gb|AAA63598.1| NodD1 [Bradyrhizobium elkanii USDA 94] Length = 314 Score = 631 bits (1628), Expect = e-179, Method: Compositional matrix adjust. Identities = 314/314 (100%), Positives = 314/314 (100%) Query: 1 MRFKGLDLNLLVALDALMTERNLTAAARQINLSQPAMSAAIARLRSYFRDELFTMRGREL 60 MRFKGLDLNLLVALDALMTERNLTAAARQINLSQPAMSAAIARLRSYFRDELFTMRGREL Sbjct: 1 MRFKGLDLNLLVALDALMTERNLTAAARQINLSQPAMSAAIARLRSYFRDELFTMRGREL 60 Query: 61 VPTPGAEALAGPVREALLHIQLSIISRDAFDPTLSSRRFRVILSDFMTIVFFRRIVDRIA 120 VPTPGAEALAGPVREALLHIQLSIISRDAFDPTLSSRRFRVILSDFMTIVFFRRIVDRIA Sbjct: 61 VPTPGAEALAGPVREALLHIQLSIISRDAFDPTLSSRRFRVILSDFMTIVFFRRIVDRIA 120 Query: 121 QEAPAVRFELLPFSDEPGELLRRGEVDFLILPELFMSSAHPKATLFDETLVCVGCRTNKQ 180 QEAPAVRFELLPFSDEPGELLRRGEVDFLILPELFMSSAHPKATLFDETLVCVGCRTNKQ Sbjct: 121 QEAPAVRFELLPFSDEPGELLRRGEVDFLILPELFMSSAHPKATLFDETLVCVGCRTNKQ 180 Query: 181 LLRPLTFEKYNSMGHVTAKFGRALRPNLEEWFLLEHGLKRRIEVVVQGFSLIPPILFDTG 240 LLRPLTFEKYNSMGHVTAKFGRALRPNLEEWFLLEHGLKRRIEVVVQGFSLIPPILFDTG Sbjct: 181 LLRPLTFEKYNSMGHVTAKFGRALRPNLEEWFLLEHGLKRRIEVVVQGFSLIPPILFDTG 240 Query: 241 RIGTMPLRLARHFEKWMPLRIVEPPLPLPTFTEAVQWPAFHNTDPASIWMRRILLEEASN 300 RIGTMPLRLARHFEKWMPLRIVEPPLPLPTFTEAVQWPAFHNTDPASIWMRRILLEEASN Sbjct: 241 RIGTMPLRLARHFEKWMPLRIVEPPLPLPTFTEAVQWPAFHNTDPASIWMRRILLEEASN 300 Query: 301 MGSADRKLPTRRRC 314 MGSADRKLPTRRRC Sbjct: 301 MGSADRKLPTRRRC 314 >sp|P04682.1|NODD_BRASP RecName: Full=Nodulation protein D pir||D26813 nodulation protein nodD - Bradyrhizobium sp emb|CAA27346.1| unnamed protein product [Bradyrhizobium sp.] Length = 338 Score = 583 bits (1502), Expect = e-164, Method: Compositional matrix adjust. Identities = 293/310 (94%), Positives = 297/310 (95%) Query: 1 MRFKGLDLNLLVALDALMTERNLTAAARQINLSQPAMSAAIARLRSYFRDELFTMRGREL 60 MRFKGLDLNLLVALDALMTERNLTAAAR+INLSQPAMSAAIARLRSYFRDELFTMRGREL Sbjct: 1 MRFKGLDLNLLVALDALMTERNLTAAARKINLSQPAMSAAIARLRSYFRDELFTMRGREL 60 Query: 61 VPTPGAEALAGPVREALLHIQLSIISRDAFDPTLSSRRFRVILSDFMTIVFFRRIVDRIA 120 V TPGAEALAGPVREALLHIQLSIISRDAFDP SSRRFRVILSDFMTIVFFRRIVDRIA Sbjct: 61 VLTPGAEALAGPVREALLHIQLSIISRDAFDPAQSSRRFRVILSDFMTIVFFRRIVDRIA 120 Query: 121 QEAPAVRFELLPFSDEPGELLRRGEVDFLILPELFMSSAHPKATLFDETLVCVGCRTNKQ 180 QEAPAVRFELLPFSDEP ELLRRGEVDFLILPELFMSSAHPKATLFDETLVCVGC TNKQ Sbjct: 121 QEAPAVRFELLPFSDEPSELLRRGEVDFLILPELFMSSAHPKATLFDETLVCVGCPTNKQ 180 Query: 181 LLRPLTFEKYNSMGHVTAKFGRALRPNLEEWFLLEHGLKRRIEVVVQGFSLIPPILFDTG 240 L RPLTFEKYNSMGHVTA+FGRALRPNLEEWFLLEHGLKRRIEVVVQGFSLIPPIL DT Sbjct: 181 LSRPLTFEKYNSMGHVTAQFGRALRPNLEEWFLLEHGLKRRIEVVVQGFSLIPPILLDTS 240 Query: 241 RIGTMPLRLARHFEKWMPLRIVEPPLPLPTFTEAVQWPAFHNTDPASIWMRRILLEEASN 300 RIGTMPLRLARHFEK MPL+IVEPPLPLPTFTEAVQWPAFHNTDPASIWMRRILLEEASN Sbjct: 241 RIGTMPLRLARHFEKRMPLQIVEPPLPLPTFTEAVQWPAFHNTDPASIWMRRILLEEASN 300 Query: 301 MGSADRKLPT 310 M S R+ PT Sbjct: 301 MASEHREPPT 310 >dbj|BAB70606.1| nodulation regulator protein [Bradyrhizobium elkanii] dbj|BAB70607.1| nodulation regulator protein [Bradyrhizobium elkanii] Length = 289 Score = 581 bits (1497), Expect = e-164, Method: Compositional matrix adjust. Identities = 289/289 (100%), Positives = 289/289 (100%) Query: 13 ALDALMTERNLTAAARQINLSQPAMSAAIARLRSYFRDELFTMRGRELVPTPGAEALAGP 72 ALDALMTERNLTAAARQINLSQPAMSAAIARLRSYFRDELFTMRGRELVPTPGAEALAGP Sbjct: 1 ALDALMTERNLTAAARQINLSQPAMSAAIARLRSYFRDELFTMRGRELVPTPGAEALAGP 60 Query: 73 VREALLHIQLSIISRDAFDPTLSSRRFRVILSDFMTIVFFRRIVDRIAQEAPAVRFELLP 132 VREALLHIQLSIISRDAFDPTLSSRRFRVILSDFMTIVFFRRIVDRIAQEAPAVRFELLP Sbjct: 61 VREALLHIQLSIISRDAFDPTLSSRRFRVILSDFMTIVFFRRIVDRIAQEAPAVRFELLP 120 Query: 133 FSDEPGELLRRGEVDFLILPELFMSSAHPKATLFDETLVCVGCRTNKQLLRPLTFEKYNS 192 FSDEPGELLRRGEVDFLILPELFMSSAHPKATLFDETLVCVGCRTNKQLLRPLTFEKYNS Sbjct: 121 FSDEPGELLRRGEVDFLILPELFMSSAHPKATLFDETLVCVGCRTNKQLLRPLTFEKYNS 180 Query: 193 MGHVTAKFGRALRPNLEEWFLLEHGLKRRIEVVVQGFSLIPPILFDTGRIGTMPLRLARH 252 MGHVTAKFGRALRPNLEEWFLLEHGLKRRIEVVVQGFSLIPPILFDTGRIGTMPLRLARH Sbjct: 181 MGHVTAKFGRALRPNLEEWFLLEHGLKRRIEVVVQGFSLIPPILFDTGRIGTMPLRLARH 240 Query: 253 FEKWMPLRIVEPPLPLPTFTEAVQWPAFHNTDPASIWMRRILLEEASNM 301 FEKWMPLRIVEPPLPLPTFTEAVQWPAFHNTDPASIWMRRILLEEASNM Sbjct: 241 FEKWMPLRIVEPPLPLPTFTEAVQWPAFHNTDPASIWMRRILLEEASNM 289 >ref|NP_768663.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] sp|Q45264.1|NOD11_BRAJA RecName: Full=Nodulation protein D 1 gb|AAG60994.1|AF322013_113 NodD1 [Bradyrhizobium japonicum] gb|AAA26234.1| nodulation protein [Bradyrhizobium japonicum] dbj|BAC47288.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 314 Score = 577 bits (1487), Expect = e-163, Method: Compositional matrix adjust. Identities = 284/314 (90%), Positives = 299/314 (95%) Query: 1 MRFKGLDLNLLVALDALMTERNLTAAARQINLSQPAMSAAIARLRSYFRDELFTMRGREL 60 MRFKGLDLNLLVALDA+MT RNLTAAAR+INLSQPAMSAAIARLR+YFRDELFTMRGREL Sbjct: 1 MRFKGLDLNLLVALDAVMTARNLTAAARKINLSQPAMSAAIARLRTYFRDELFTMRGREL 60 Query: 61 VPTPGAEALAGPVREALLHIQLSIISRDAFDPTLSSRRFRVILSDFMTIVFFRRIVDRIA 120 VPTPGAEALAGPVREALLHIQLSIISRDA DP SSRRFRVILSDFMTIVFFRRIVDR+A Sbjct: 61 VPTPGAEALAGPVREALLHIQLSIISRDALDPAQSSRRFRVILSDFMTIVFFRRIVDRMA 120 Query: 121 QEAPAVRFELLPFSDEPGELLRRGEVDFLILPELFMSSAHPKATLFDETLVCVGCRTNKQ 180 QEAPAVRFELLPFSDEP +LLRRGEVDFLILPELFMSSAHPKATLFDE+LVCVGCR NKQ Sbjct: 121 QEAPAVRFELLPFSDEPDDLLRRGEVDFLILPELFMSSAHPKATLFDESLVCVGCRANKQ 180 Query: 181 LLRPLTFEKYNSMGHVTAKFGRALRPNLEEWFLLEHGLKRRIEVVVQGFSLIPPILFDTG 240 L R LTFE+Y SMGHVTAKFGRALRPNLEEWFLLEHGL+RRIEVVVQGFSLIPP+L DT Sbjct: 181 LSRQLTFEQYISMGHVTAKFGRALRPNLEEWFLLEHGLRRRIEVVVQGFSLIPPLLLDTS 240 Query: 241 RIGTMPLRLARHFEKWMPLRIVEPPLPLPTFTEAVQWPAFHNTDPASIWMRRILLEEASN 300 RIGTMPLRLARHFEK MPLRI++PPLPLPTFTEA+QWP+FHNTDPASIWMRRILLEEASN Sbjct: 241 RIGTMPLRLARHFEKRMPLRIIQPPLPLPTFTEALQWPSFHNTDPASIWMRRILLEEASN 300 Query: 301 MGSADRKLPTRRRC 314 M S D++ PTRRRC Sbjct: 301 MASGDQEPPTRRRC 314 >dbj|BAB70602.1| nodulation regulator protein [Bradyrhizobium sp. TARC 112] Length = 289 Score = 543 bits (1400), Expect = e-153, Method: Compositional matrix adjust. Identities = 269/289 (93%), Positives = 278/289 (96%) Query: 13 ALDALMTERNLTAAARQINLSQPAMSAAIARLRSYFRDELFTMRGRELVPTPGAEALAGP 72 ALDA+MTERNLTAAAR+INLSQPAMSAAIARLR+YFRDELFTM+GRELVPTPGAEALAGP Sbjct: 1 ALDAVMTERNLTAAARKINLSQPAMSAAIARLRTYFRDELFTMKGRELVPTPGAEALAGP 60 Query: 73 VREALLHIQLSIISRDAFDPTLSSRRFRVILSDFMTIVFFRRIVDRIAQEAPAVRFELLP 132 VREALLHIQLSIISRDAFDPT SSRRFRVILSDFMTIVFFRRIVDRIAQEAPAVRFELLP Sbjct: 61 VREALLHIQLSIISRDAFDPTQSSRRFRVILSDFMTIVFFRRIVDRIAQEAPAVRFELLP 120 Query: 133 FSDEPGELLRRGEVDFLILPELFMSSAHPKATLFDETLVCVGCRTNKQLLRPLTFEKYNS 192 FSDEP ELLRRGEVDFLILPELFMSSAHPKATLFD+TLVCVGCR NKQL R LTF+KY S Sbjct: 121 FSDEPDELLRRGEVDFLILPELFMSSAHPKATLFDKTLVCVGCRANKQLSRQLTFDKYIS 180 Query: 193 MGHVTAKFGRALRPNLEEWFLLEHGLKRRIEVVVQGFSLIPPILFDTGRIGTMPLRLARH 252 MGHV AKFGRALRPNLEEWFLLEHGL+RRIEVVVQGFSLIPPIL DT RIGTMPLRLARH Sbjct: 181 MGHVAAKFGRALRPNLEEWFLLEHGLRRRIEVVVQGFSLIPPILLDTSRIGTMPLRLARH 240 Query: 253 FEKWMPLRIVEPPLPLPTFTEAVQWPAFHNTDPASIWMRRILLEEASNM 301 FEK MPLRI+EPPLPLP FTEAVQWP+FHNTDPASIWMRRILLEEASNM Sbjct: 241 FEKRMPLRIIEPPLPLPIFTEAVQWPSFHNTDPASIWMRRILLEEASNM 289