BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0081.0007.p (379 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_766789.1| cytochrome O ubiquinol oxidase subunit II [Brad... 587 e-166 ref|YP_483864.1| ubiquinol oxidase, subunit II [Rhodopseudomonas... 557 e-156 ref|YP_567734.1| ubiquinol oxidase subunit II [Rhodopseudomonas ... 555 e-156 ref|YP_001238126.1| cytochrome o ubiquinol oxidase subunit II [B... 524 e-147 ref|YP_001203833.1| cytochrome o ubiquinol oxidase subunit II [B... 514 e-143 >ref|NP_766789.1| cytochrome O ubiquinol oxidase subunit II [Bradyrhizobium japonicum USDA 110] dbj|BAC45414.1| cytochrome O ubiquinol oxidase subunit II [Bradyrhizobium japonicum USDA 110] Length = 386 Score = 587 bits (1514), Expect = e-166, Method: Compositional matrix adjust. Identities = 279/371 (75%), Positives = 311/371 (83%), Gaps = 2/371 (0%) Query: 9 GCDFVVLAPAGDIAAQQRDLVVISTVLMLIIVLPVMALTVFFAWRYRQSNAAAPYEPEWD 68 GC++VVLAPAGDIAAQQRDLV+ISTVLML+IV+PVMALTV FAWRYRQSN +A YEP+WD Sbjct: 18 GCNYVVLAPAGDIAAQQRDLVIISTVLMLLIVVPVMALTVLFAWRYRQSNTSARYEPDWD 77 Query: 69 HSTQLELVIWSAPLLIIICLGALTWMGTHLLDPYRSLGRIAADKPIESKDAPLNVEVVAL 128 HST+LELVIWSAPLLIIICLGALTWMGTHLLDPYR+LGRI AD+ ++ APL V+VVAL Sbjct: 78 HSTKLELVIWSAPLLIIICLGALTWMGTHLLDPYRTLGRIHADRAVDQSKAPLEVDVVAL 137 Query: 129 DWKWLFIYPDYGVAAVNELAAPVDRPIRFRITASSVMNSFYIPALAGQIYAMPGMETKLH 188 DWKWLFIYPDYG+A VN+LAAPVDRPI FRITASSVMNSFYIPALAGQIYAMPGMETKLH Sbjct: 138 DWKWLFIYPDYGIATVNDLAAPVDRPINFRITASSVMNSFYIPALAGQIYAMPGMETKLH 197 Query: 189 AVANKEGTYRGFSANYSGAGFSGMHFDFKSLSATDFDKWIGSAKASSNMLGRTDYLQLER 248 AV N GTY+GFSANYSGAGFSGMHFDF+ L FD WI SAK++ LGR +YLQLE+ Sbjct: 198 AVVNHTGTYKGFSANYSGAGFSGMHFDFQGLDDKGFDAWIASAKSAGGSLGRAEYLQLEK 257 Query: 249 PSQNDPIRLYRSVDRDLYKAILNMCVEPGKMCMSEMMAIDAKGGLGREGFNNTLPLTYDK 308 PSQN+P+R Y ++D DLY+ ILNMCVE GKMC SEMMAIDAKGG G EG NNTLPL YDK Sbjct: 258 PSQNEPVRRYGTIDTDLYRLILNMCVETGKMCQSEMMAIDAKGGRGHEGLNNTLPLAYDK 317 Query: 309 YARRGAPLGSEPTFVAGICSMDEIKDAPSHEITAPLDLTPLRGFGLKRPPFSPAHPSSTS 368 YARRG LG EPTFVAG C+ D + + I AP D PL G GLKRP F+P S+S Sbjct: 318 YARRGTALGPEPTFVAGTCTPDAPQGQTTASIKAPADTAPLLGAGLKRPTFTPL--KSSS 375 Query: 369 LLLGQRPKSES 379 LGQRPKS+S Sbjct: 376 FFLGQRPKSDS 386 >ref|YP_483864.1| ubiquinol oxidase, subunit II [Rhodopseudomonas palustris HaA2] gb|ABD04953.1| ubiquinol oxidase, subunit II [Rhodopseudomonas palustris HaA2] Length = 385 Score = 557 bits (1436), Expect = e-156, Method: Compositional matrix adjust. Identities = 272/372 (73%), Positives = 305/372 (81%), Gaps = 5/372 (1%) Query: 9 GCDFVVLAPAGDIAAQQRDLVVISTVLMLIIVLPVMALTVFFAWRYRQSNAAAPYEPEWD 68 GC+FVV+APAGDIA QQRDL+VISTVLML+IVLPVMALTV+FAWRYR SN AA Y+P+WD Sbjct: 18 GCNFVVMAPAGDIAVQQRDLIVISTVLMLLIVLPVMALTVWFAWRYRHSNDAAKYDPDWD 77 Query: 69 HSTQLELVIWSAPLLIIICLGALTWMGTHLLDPYRSLGRIAADKPIESKDAPLNVEVVAL 128 HST LELVIWSAPL IIICLGA+TWMGTHLLDPYRSL RIA D+PI+ APL V+VVAL Sbjct: 78 HSTGLELVIWSAPLAIIICLGAITWMGTHLLDPYRSLDRIAHDRPIDRAKAPLEVDVVAL 137 Query: 129 DWKWLFIYPDYGVAAVNELAAPVDRPIRFRITASSVMNSFYIPALAGQIYAMPGMETKLH 188 DWKWLFIYP+YG+A++NELAAPVDRPI FRITASSVMNSFYIPALAG IYAMPGMETKLH Sbjct: 138 DWKWLFIYPEYGIASLNELAAPVDRPISFRITASSVMNSFYIPALAGMIYAMPGMETKLH 197 Query: 189 AVANKEGTYRGFSANYSGAGFSGMHFDFKSLSATDFDKWIGSAKASSNMLGRTDYLQLER 248 AV N GTY+GFSANYSGAGFSGM FDF L F++W+ KASS+ LGRT+YL LE+ Sbjct: 198 AVVNHAGTYKGFSANYSGAGFSGMRFDFHGLDDAGFEQWVAKTKASSDTLGRTEYLALEK 257 Query: 249 PSQNDPIRLYRSVDRDLYKAILNMCVEPGKMCMSEMMAIDAKGGLGREGFNNTLPLTYDK 308 PS N+P R + +VD DLY+AILNMCVEPGKMCMSEMMAIDA+GG G G NTLPL YDK Sbjct: 258 PSANEPARGFGTVDADLYRAILNMCVEPGKMCMSEMMAIDARGGNGMAGLRNTLPLAYDK 317 Query: 309 YARRGAPLGSEPTFVAGICSMDEIKDAPSHEITAPL-DLTPLRGFGLKRPPFSPAHPSST 367 YARRG LG EP+FVAG C++DE P +TA + D +PL G GLKRPP SST Sbjct: 318 YARRGTALGPEPSFVAGTCTIDE----PQGRVTAQVRDSSPLLGAGLKRPPLFTPLGSST 373 Query: 368 SLLLGQRPKSES 379 SLL KSES Sbjct: 374 SLLFAPASKSES 385 >ref|YP_567734.1| ubiquinol oxidase subunit II [Rhodopseudomonas palustris BisB5] gb|ABE37833.1| ubiquinol oxidase, subunit II [Rhodopseudomonas palustris BisB5] Length = 385 Score = 555 bits (1431), Expect = e-156, Method: Compositional matrix adjust. Identities = 272/373 (72%), Positives = 304/373 (81%), Gaps = 5/373 (1%) Query: 8 GGCDFVVLAPAGDIAAQQRDLVVISTVLMLIIVLPVMALTVFFAWRYRQSNAAAPYEPEW 67 GGCDFVVLAPAGD+AAQQRDL+VISTVLML+IVLPVMALTV+FAWRYR SN AA Y+P+W Sbjct: 17 GGCDFVVLAPAGDVAAQQRDLIVISTVLMLLIVLPVMALTVWFAWRYRHSNEAARYDPDW 76 Query: 68 DHSTQLELVIWSAPLLIIICLGALTWMGTHLLDPYRSLGRIAADKPIESKDAPLNVEVVA 127 DHST LELVIWSAPL IIICLGA+TWMGTHLLDPYRSL RIAAD+PI+ PL V VVA Sbjct: 77 DHSTGLELVIWSAPLAIIICLGAITWMGTHLLDPYRSLDRIAADRPIDRAKTPLEVNVVA 136 Query: 128 LDWKWLFIYPDYGVAAVNELAAPVDRPIRFRITASSVMNSFYIPALAGQIYAMPGMETKL 187 LDWKWLFIYP+YG+A++NELAAPVDRPI FRITASSVMNSFYIPALAGQIYAMPGMETKL Sbjct: 137 LDWKWLFIYPEYGIASLNELAAPVDRPINFRITASSVMNSFYIPALAGQIYAMPGMETKL 196 Query: 188 HAVANKEGTYRGFSANYSGAGFSGMHFDFKSLSATDFDKWIGSAKASSNMLGRTDYLQLE 247 HAV N G Y+GFSANYSGAGFSGM F F + + F++W+ +AS N LGRT+YL LE Sbjct: 197 HAVVNHAGKYKGFSANYSGAGFSGMQFAFHGVDDSGFEQWVARTRASGNSLGRTEYLALE 256 Query: 248 RPSQNDPIRLYRSVDRDLYKAILNMCVEPGKMCMSEMMAIDAKGGLGREGFNNTLPLTYD 307 RPS N+P R + SVD DLY+AILNMCV+PGKMCMSEMMAIDA+GGLG G NNTLP+ YD Sbjct: 257 RPSSNEPARGFGSVDSDLYRAILNMCVDPGKMCMSEMMAIDARGGLGLAGLNNTLPIAYD 316 Query: 308 KYARRGAPLGSEPTFVAGICSMDEIKDAPSHEITAPL-DLTPLRGFGLKRPPFSPAHPSS 366 KYARRG LG +P FVAG C++ E P ITA + TPL G GLKRP SS Sbjct: 317 KYARRGTALGPQPAFVAGTCTIAE----PQGRITAQARESTPLLGAGLKRPSLFTPPGSS 372 Query: 367 TSLLLGQRPKSES 379 TSL LG KS+S Sbjct: 373 TSLPLGATSKSDS 385 >ref|YP_001238126.1| cytochrome o ubiquinol oxidase subunit II [Bradyrhizobium sp. BTAi1] gb|ABQ34220.1| cytochrome bo3 quinol oxidase subunit 2 [Bradyrhizobium sp. BTAi1] Length = 390 Score = 524 bits (1350), Expect = e-147, Method: Compositional matrix adjust. Identities = 257/375 (68%), Positives = 299/375 (79%), Gaps = 8/375 (2%) Query: 10 CDFVVLAPAGDIAAQQRDLVVISTVLMLIIVLPVMALTVFFAWRYRQSNAAAPYEPEWDH 69 C+ VVLAP+GD+AAQQRDLV+I+TVLML+IV+PVMA T AWRYRQSN AA Y P+WDH Sbjct: 19 CNLVVLAPSGDVAAQQRDLVIIATVLMLLIVVPVMAATAIVAWRYRQSNEAATYTPDWDH 78 Query: 70 STQLELVIWSAPLLIIICLGALTWMGTHLLDPYRSLGRIAADKPIESKDAPLNVEVVALD 129 STQLEL+IW+APLLIIICLGA+TWMGTHLLDPYR+LGRIAAD+P+ +D PL V VVALD Sbjct: 79 STQLELLIWAAPLLIIICLGAVTWMGTHLLDPYRTLGRIAADRPVTPQDKPLEVNVVALD 138 Query: 130 WKWLFIYPDYGVAAVNELAAPVDRPIRFRITASSVMNSFYIPALAGQIYAMPGMETKLHA 189 WKWLFIYP+YGVA+VNELAAPV+RP+ FRIT+SSVMNSFYIPALAGQIYAMPGM+++LHA Sbjct: 139 WKWLFIYPEYGVASVNELAAPVNRPLDFRITSSSVMNSFYIPALAGQIYAMPGMQSRLHA 198 Query: 190 VANKEGTYRGFSANYSGAGFSGMHFDFKSLSATDFDKWIGSAKASSNMLGRTDYLQLERP 249 V NK G YRGFSANYSGAGFSGM F F LS +F W+ AKAS L + DYL LERP Sbjct: 199 VINKPGVYRGFSANYSGAGFSGMRFAFHGLSDAEFAGWVDKAKASGQQLTKPDYLVLERP 258 Query: 250 SQNDPIRLYRSVDRDLYKAILNMCVEPGKMCMSEMMAIDAKGGLGREGFNNTLPLTYDKY 309 S N+P+R Y SVD DL++AILNMCVE GKMCMSEMMAIDA+GG+G G NTLPL YDK+ Sbjct: 259 SANEPVRYYASVDSDLFRAILNMCVETGKMCMSEMMAIDARGGMGMAGVRNTLPLAYDKF 318 Query: 310 ARRGAPLGSEPTFVA-GIC----SMDEIKDAPSHEITAPLDLTPLRGFGLKRPPFSPAHP 364 A RGA G+EP+FVA G+C + + + S + APLD TPL+G GL+RP S P Sbjct: 319 AGRGAVFGAEPSFVAGGVCLPGDQVTRMAEDSSPTVLAPLDWTPLQGRGLERP--SLMRP 376 Query: 365 SSTSLLLGQRPKSES 379 S S G KS S Sbjct: 377 SKAS-FTGPTSKSNS 390 >ref|YP_001203833.1| cytochrome o ubiquinol oxidase subunit II [Bradyrhizobium sp. ORS 278] emb|CAL75596.1| cytochrome o ubiquinol oxidase subunit II (Ubiquinol oxidase chain B) [Bradyrhizobium sp. ORS 278] Length = 391 Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust. Identities = 248/375 (66%), Positives = 298/375 (79%), Gaps = 9/375 (2%) Query: 10 CDFVVLAPAGDIAAQQRDLVVISTVLMLIIVLPVMALTVFFAWRYRQSNAAAPYEPEWDH 69 C+ VVL+P+GD+AAQQRDLV+I+TVLML+IV+PVM T AWRYRQSN +A Y P+WDH Sbjct: 19 CNLVVLSPSGDVAAQQRDLVIIATVLMLLIVVPVMVATAMIAWRYRQSNQSATYTPDWDH 78 Query: 70 STQLELVIWSAPLLIIICLGALTWMGTHLLDPYRSLGRIAADKPIESKDAPLNVEVVALD 129 STQLEL+IW+APLLIIICLGA+TWMGTHLLDPYR+LGRI+AD+ + +D PL V VVALD Sbjct: 79 STQLELLIWAAPLLIIICLGAVTWMGTHLLDPYRTLGRISADRAVTPQDKPLEVNVVALD 138 Query: 130 WKWLFIYPDYGVAAVNELAAPVDRPIRFRITASSVMNSFYIPALAGQIYAMPGMETKLHA 189 WKWLFIYP+YG+A++NELAAPV+RP+ FRIT+SSVMNSFYIPALAGQIYAMPGM+++LHA Sbjct: 139 WKWLFIYPEYGIASLNELAAPVNRPLDFRITSSSVMNSFYIPALAGQIYAMPGMQSRLHA 198 Query: 190 VANKEGTYRGFSANYSGAGFSGMHFDFKSLSATDFDKWIGSAKASSNMLGRTDYLQLERP 249 V NK G YRGFSANYSGAGFS M F F LS +F WI AKA N LG+ +YL LERP Sbjct: 199 VINKPGVYRGFSANYSGAGFSHMRFAFHGLSDAEFAGWIEKAKAGGNALGKPEYLTLERP 258 Query: 250 SQNDPIRLYRSVDRDLYKAILNMCVEPGKMCMSEMMAIDAKGGLGREGFNNTLPLTYDKY 309 S N+P+R Y SVD DL++AILNMCVE GKMCMSEMMAIDAKGG+G G NTLPL YDK+ Sbjct: 259 SVNEPVRYYASVDGDLFRAILNMCVETGKMCMSEMMAIDAKGGMGMAGVRNTLPLAYDKF 318 Query: 310 ARRGAPLGSEPTFVA-GIC----SMDEIKDAPSHEITAPLDLTPLRGFGLKRPPFSPAHP 364 A RGA G++P+FV+ G+C + + + S + APLD TPL+G GL+RP P Sbjct: 319 AGRGAVFGADPSFVSGGVCLPGDQVTRMAEDTSPTVLAPLDWTPLQGRGLERPGL--MRP 376 Query: 365 SSTSLLLGQRPKSES 379 S S + RP S+S Sbjct: 377 SKASFI--TRPSSKS 389