BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0081.0005.p (269 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001020137.1| hypothetical protein Mpe_A0940 [Methylibium ... 82 6e-14 ref|ZP_02735842.1| hypothetical protein GobsU_28790 [Gemmata obs... 82 8e-14 ref|YP_363681.1| putative secreted protein [Xanthomonas campestr... 78 1e-12 ref|ZP_06485678.1| putative secreted protein [Xanthomonas campes... 77 3e-12 ref|ZP_06703065.1| secreted protein [Xanthomonas fuscans subsp. ... 77 3e-12 >ref|YP_001020137.1| hypothetical protein Mpe_A0940 [Methylibium petroleiphilum PM1] gb|ABM93902.1| conserved hypothetical protein [Methylibium petroleiphilum PM1] Length = 291 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 72/243 (29%), Positives = 114/243 (46%), Gaps = 18/243 (7%) Query: 39 GDEIATDRPDVTNSSIVVPVGSLQNENGI--NLTGRSSGR--SIDGSNSRWRLGIAPCLE 94 GD I+TDRPD SS VV G Q E G+ +G ++G +D + + RLG++ LE Sbjct: 48 GDGISTDRPDFVESSQVVGKGRFQLETGLARERSGDAAGNRLRVDSTPTLLRLGVSETLE 107 Query: 95 VLVDLPSYV-STVKSPGAS------GFSDVAPGIKWQIS---PLPGKLDLSITAGVALPT 144 + ++ ++ S ++P AS GF+D + G+KW + G+ ++ V + T Sbjct: 108 LRIETDGHLRSRSEAPAASRVTRERGFADTSLGVKWHMQDGDEAAGRPAVAWLLHVDVDT 167 Query: 145 GAAEIAGRGAQPYVQLPWSWELHDGWGVSGMFTEFFRPAELTGRHMSEATFVIE-KKLTE 203 G+A G G +P +++ WEL V M +GR + V K T+ Sbjct: 168 GSAAFRGSGLRPSLRVVGEWELDGAMSVGAMGGIALDRDTDSGRFATGILAVTAGKSWTD 227 Query: 204 RISVFTEYVGDYPDGAR---PTQLINSGGLYRITPTQQVDFHVAFGLNRNSPNTIVGLGY 260 R F E G +R +++G Y ++PT QVD V+ G+ SP+ G G Sbjct: 228 RFRTFVELAGRQLAPSRHGGSVVSVDAGTAYLLSPTVQVDAVVSRGITHTSPDWEFGAGL 287 Query: 261 SFR 263 S R Sbjct: 288 SIR 290 >ref|ZP_02735842.1| hypothetical protein GobsU_28790 [Gemmata obscuriglobus UQM 2246] Length = 320 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 78/242 (32%), Positives = 116/242 (47%), Gaps = 23/242 (9%) Query: 42 IATDRPDVTNSSIVVPVGSLQNENGINLTG------RSSGRSIDGSNSRWRLGIAPCLEV 95 I T+RPD TNSS V G +Q E+G T R + S + R L +A EV Sbjct: 81 ITTERPDFTNSSRTVGRGRVQLESGYTFTTARDPVTRVTSHSFPEALLRVGL-LADWFEV 139 Query: 96 LVDLPSYVSTVKSPG------ASGFSDVAPGIKWQISPLPG-KLDLSITAGVALPTGAAE 148 V S +ST +S G A+GF D+ K+ ++ G + + ++T + +PTG E Sbjct: 140 QVG-QSALST-RSAGTDGVARATGFQDLYLATKFALTEGAGWRPETAVTLQMTVPTGRRE 197 Query: 149 IAGRGAQPYVQLPWSWELHDGWGVSGMFTEFFRPAELTGRHMSE--ATFVIEKKLTERIS 206 ++GR P + +SWEL G + + TG ++ + + LTER+ Sbjct: 198 LSGRHPLPGLLYLYSWELIPDLVSLGGTSAAAAAVDDTGGTYAQLAQSLSVGYTLTERLG 257 Query: 207 VFTEYVGDYPDGAR-----PTQLINSGGLYRITPTQQVDFHVAFGLNRNSPNTIVGLGYS 261 FTE+ P GA P +SG LYR+TP QVD FGLNR + + G+G++ Sbjct: 258 AFTEFFVLAPAGADTPRAGPQYYFDSGLLYRVTPNFQVDARFGFGLNRRAGDLFAGVGFA 317 Query: 262 FR 263 R Sbjct: 318 VR 319 >ref|YP_363681.1| putative secreted protein [Xanthomonas campestris pv. vesicatoria str. 85-10] ref|ZP_08189805.1| hypothetical protein XPE_3891 [Xanthomonas perforans 91-118] emb|CAJ23627.1| putative secreted protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gb|EGD12571.1| hypothetical protein XPE_3891 [Xanthomonas perforans 91-118] Length = 253 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 71/240 (29%), Positives = 108/240 (45%), Gaps = 14/240 (5%) Query: 34 GCPKPGDEIATDRPDVTNSSIVVPVGSLQNENGINLTGRSSGRSIDGSNSRWRLGIAPCL 93 G + D IATDRPD SS+ V +Q E + R + + R G+ Sbjct: 17 GHARAEDPIATDRPDFVESSLTVGDRRVQVETSVAWE-RDDAVDAYSTPTLLRYGLGQTW 75 Query: 94 EVLVDLPSYVSTVKSPG---ASGFSDVAPGIKWQI-SPLPGKLDLSITAGVALPTGAAEI 149 E+ ++ + + PG SG SDV+ GIK + S GK L+ V LP+GA + Sbjct: 76 ELRLETDGW-QRIDLPGDAQVSGMSDVSLGIKHHLASSDDGKTSLAWLLHVDLPSGAQAL 134 Query: 150 AGRGAQPYVQLPWSWELHDGWGVSGMFTEFFRPAELTGRHMSEATF--VIEKKLTERISV 207 G GA+P +L WEL D +GM + G + F V+ K +R+ Sbjct: 135 RGHGARPSFRLVAEWELSDSIS-AGMMPGVIWDDDGQGNRYTAGIFGAVLGKAWNDRVRS 193 Query: 208 FTEY----VGDYPDGARPTQLINSGGLYRITPTQQVDFHVAFGLNRNSPNTIVGLGYSFR 263 F E + + DG L++ G + ++ Q+D + GLN SP+ +G+G SFR Sbjct: 194 FVEVALPQIANSDDGG-TVALLDVGSAWLLSNDVQLDAVYSRGLNDRSPDHALGVGLSFR 252 >ref|ZP_06485678.1| putative secreted protein [Xanthomonas campestris pv. vasculorum NCPPB702] ref|ZP_06491693.1| putative secreted protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 253 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 71/240 (29%), Positives = 107/240 (44%), Gaps = 14/240 (5%) Query: 34 GCPKPGDEIATDRPDVTNSSIVVPVGSLQNENGINLTGRSSGRSIDGSNSRWRLGIAPCL 93 G + D IATDRPD SS+ V +Q E + R + + R G+ Sbjct: 17 GHARAEDPIATDRPDFVESSLTVGDRRVQVETSVAWE-RDDAVDAYSTPTLLRYGLGQTW 75 Query: 94 EVLVDLPSYVSTVKSPG---ASGFSDVAPGIKWQI-SPLPGKLDLSITAGVALPTGAAEI 149 E+ ++ + + PG SG SDV+ GIK + S GK L+ V LP+GA + Sbjct: 76 ELRLETDGW-QRIDLPGDAQVSGMSDVSLGIKHHLASSDDGKASLAWLLHVDLPSGAQAL 134 Query: 150 AGRGAQPYVQLPWSWELHDGWGVSGMFTEFFRPAELTGRHMSEATF--VIEKKLTERISV 207 G GA+P +L WEL D +GM + G + F V+ K +R+ Sbjct: 135 RGHGARPSFRLVAEWELSDSVS-AGMMPGVIWDDDGQGNRYAAGIFGAVLGKAWNDRVRS 193 Query: 208 FTE----YVGDYPDGARPTQLINSGGLYRITPTQQVDFHVAFGLNRNSPNTIVGLGYSFR 263 F E + DG L++ G + ++ Q+D + GLN SP+ +G+G SFR Sbjct: 194 FVEVALPQIAKSDDGG-TMALLDVGSAWLLSNDVQLDAVYSRGLNDRSPDHALGVGLSFR 252 >ref|ZP_06703065.1| secreted protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] ref|ZP_06730385.1| secreted protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gb|EFF45377.1| secreted protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gb|EFF48507.1| secreted protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 253 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 71/240 (29%), Positives = 107/240 (44%), Gaps = 14/240 (5%) Query: 34 GCPKPGDEIATDRPDVTNSSIVVPVGSLQNENGINLTGRSSGRSIDGSNSRWRLGIAPCL 93 G + D IATDRPD SS+ V +Q E + R + + R G+ Sbjct: 17 GQARAEDPIATDRPDFVESSLTVGDRRVQVETSVAWE-RDDAVDAYSTPTLLRYGLGQTW 75 Query: 94 EVLVDLPSYVSTVKSPG---ASGFSDVAPGIKWQI-SPLPGKLDLSITAGVALPTGAAEI 149 E+ ++ + + PG SG SDV+ GIK + S GK L+ V LP+GA + Sbjct: 76 ELRLETDGW-QRIDLPGDAQVSGMSDVSLGIKHHLASSDDGKTSLAWLLHVDLPSGAQAL 134 Query: 150 AGRGAQPYVQLPWSWELHDGWGVSGMFTEFFRPAELTGRHMSEATF--VIEKKLTERISV 207 G GA+P +L WEL D +GM + G + F V+ K +R+ Sbjct: 135 RGHGARPSFRLVAEWELSDSIS-AGMMPGVIWDDDGQGNRYTAGIFGAVLGKAWNDRVRS 193 Query: 208 FTEY----VGDYPDGARPTQLINSGGLYRITPTQQVDFHVAFGLNRNSPNTIVGLGYSFR 263 F E + DG L++ G + ++ Q+D + GLN SP+ +G+G SFR Sbjct: 194 FVEVALPQIAKSDDGG-TVALLDIGSAWLLSNDVQLDAVYSRGLNDRSPDHALGVGLSFR 252