BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0081.0004.p         (133 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_08210295.1| cytochrome c class I [Novosphingobium nitroge...   149   2e-34
ref|YP_004674272.1| Cytochrome c2 [Hyphomicrobium sp. MC1] >gi|3...   135   2e-30
ref|YP_745731.1| cytochrome c [Granulibacter bethesdensis CGDNIH...   110   7e-23
ref|YP_001753369.1| cytochrome c class I [Methylobacterium radio...   110   8e-23
ref|YP_001753862.1| cytochrome c class I [Methylobacterium radio...   109   1e-22

>ref|ZP_08210295.1| cytochrome c class I [Novosphingobium nitrogenifigens DSM 19370]
 gb|EGD57777.1| cytochrome c class I [Novosphingobium nitrogenifigens DSM 19370]
          Length = 123

 Score =  149 bits (375), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 70/119 (58%), Positives = 89/119 (74%), Gaps = 3/119 (2%)

Query: 16  KIAAMA-AIAILLAVNS--ARAAGDAARGATLYQGCGDCHSIEKNDVGPMHRGVVGRLAG 72
           ++AA+A A  +L+A     + ++GDAA GA LYQ C  CHSIE+ND+GP HRGVVGR AG
Sbjct: 4   RLAALAGATTVLVAATEIPSPSSGDAANGARLYQACMGCHSIEENDIGPSHRGVVGRSAG 63

Query: 73  SVAGYNYSDALKNSKIVWTEENLDKWLTGPDAMVPGTKMFYEVQDPKDRADIIAFLKEK 131
           +V GY YS A+K S +VWT  NLDKWLT P  +VPGTKM++ V DP++RADIIAFL  +
Sbjct: 64  TVPGYAYSPAIKGSGLVWTPANLDKWLTDPQVLVPGTKMYFSVSDPRERADIIAFLASQ 122


>ref|YP_004674272.1| Cytochrome c2 [Hyphomicrobium sp. MC1]
 emb|CCB63696.1| Cytochrome c2 (modular protein) [Hyphomicrobium sp. MC1]
          Length = 123

 Score =  135 bits (341), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 69/121 (57%), Positives = 85/121 (70%)

Query: 13  RQAKIAAMAAIAILLAVNSARAAGDAARGATLYQGCGDCHSIEKNDVGPMHRGVVGRLAG 72
           R AK+    A+ I + V SARAA  AA G  +YQ C DCHS++ NDVGP HRGV GR AG
Sbjct: 3   RIAKLLVAVAVGIFIIVPSARAAPSAAYGEEIYQSCQDCHSLDTNDVGPKHRGVFGRKAG 62

Query: 73  SVAGYNYSDALKNSKIVWTEENLDKWLTGPDAMVPGTKMFYEVQDPKDRADIIAFLKEKA 132
           +V  Y+YS ALK S IVWTE+ LDKWL  P  +VPG KMF+ +   +DRAD+I +LKE+A
Sbjct: 63  AVPDYSYSVALKTSGIVWTEDTLDKWLADPQKLVPGAKMFFHLDAAQDRADVIEYLKERA 122

Query: 133 K 133
           K
Sbjct: 123 K 123


>ref|YP_745731.1| cytochrome c [Granulibacter bethesdensis CGDNIH1]
 gb|ABI62808.1| cytochrome c [Granulibacter bethesdensis CGDNIH1]
          Length = 171

 Score =  110 bits (275), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 58/114 (50%), Positives = 74/114 (64%), Gaps = 4/114 (3%)

Query: 19  AMAAIAILLAVNSARAAGDAARGATLYQGCGDCHSIE--KNDVGPMHRGVVGRLAGSVAG 76
           A +A A LLA   A A GDA  G TL++ CG CHS E  KN VGP    +VGR AG   G
Sbjct: 56  AFSAFA-LLASGQAHADGDAEAGKTLFKKCGFCHSTEAGKNKVGPSLAAIVGRKAGVEPG 114

Query: 77  YNYSDALKNSKIVWTEENLDKWLTGPDAMVPGTKMFYE-VQDPKDRADIIAFLK 129
           +NYSDALK+S + W E  L+KW+  P  +V GTKM +  ++D KDR ++IA+LK
Sbjct: 115 FNYSDALKSSGLTWDEATLNKWVENPKGLVSGTKMIFPGIKDEKDRQNLIAYLK 168


>ref|YP_001753369.1| cytochrome c class I [Methylobacterium radiotolerans JCM 2831]
 gb|ACB22686.1| cytochrome c class I [Methylobacterium radiotolerans JCM 2831]
          Length = 121

 Score =  110 bits (274), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 59/121 (48%), Positives = 75/121 (61%), Gaps = 2/121 (1%)

Query: 13  RQAKIAAMAAIAILLAVNSARAAGDAARGATLYQGCGDCHSIEKNDVGPMHRGVVGRLAG 72
           R     A+ A+ + LA   A+ AGDAA G   +  C  CH+ +KN VGP  +GVVGR AG
Sbjct: 2   RSLVFGAVLAVVLPLAA-QAQEAGDAAAGEKAFAPCKACHNFQKNGVGPDLKGVVGRKAG 60

Query: 73  SVAGYNYSDALKNSKIVWTEENLDKWLTGPDAMVPGTKMFYE-VQDPKDRADIIAFLKEK 131
           +  GYNYS ALKNS I W E NL +WL  P A VPGTKM ++   D K   D+IA+LK +
Sbjct: 61  TYEGYNYSAALKNSGITWDEANLHEWLKNPKAKVPGTKMIFQGYPDDKKINDVIAYLKTQ 120

Query: 132 A 132
           +
Sbjct: 121 S 121


>ref|YP_001753862.1| cytochrome c class I [Methylobacterium radiotolerans JCM 2831]
 gb|ACB23179.1| cytochrome c class I [Methylobacterium radiotolerans JCM 2831]
          Length = 121

 Score =  109 bits (273), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 58/121 (47%), Positives = 75/121 (61%), Gaps = 2/121 (1%)

Query: 13  RQAKIAAMAAIAILLAVNSARAAGDAARGATLYQGCGDCHSIEKNDVGPMHRGVVGRLAG 72
           R   I A+ A+ +  A   A+ AGDAA G   +  C  CH+ +KN VGP  +GVVGR AG
Sbjct: 2   RMLAIGAVLAVVLPFAA-QAQEAGDAAAGEKAFAPCKACHNFQKNGVGPDLKGVVGRKAG 60

Query: 73  SVAGYNYSDALKNSKIVWTEENLDKWLTGPDAMVPGTKMFYE-VQDPKDRADIIAFLKEK 131
           +  GYNYS ALKNS I W E NL +WL  P A VPG KM ++ + D K   D+IA+LK +
Sbjct: 61  TYEGYNYSAALKNSGITWDEANLHEWLKNPKAKVPGNKMIFQGIADDKKINDLIAYLKTQ 120

Query: 132 A 132
           +
Sbjct: 121 S 121