BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0080.0080.p (343 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001220557.1| Type IV secretory pathway AvhB11 protein [Br... 590 e-167 ref|YP_001409512.1| P-type DNA transfer ATPase VirB11 [Xanthobac... 393 e-107 ref|YP_002823242.1| VirB11 type IV secretion protein [Sinorhizob... 384 e-104 ref|YP_001610351.1| VblB11 protein [Bartonella tribocorum CIP 10... 382 e-104 gb|ADN97083.1| VblB11 protein [Bartonella sp. TT0105] 381 e-104 >ref|YP_001220557.1| Type IV secretory pathway AvhB11 protein [Bradyrhizobium sp. BTAi1] gb|ABQ39885.1| Type IV secretory pathway AvhB11 protein [Bradyrhizobium sp. BTAi1] Length = 343 Score = 590 bits (1522), Expect = e-167, Method: Compositional matrix adjust. Identities = 290/341 (85%), Positives = 311/341 (91%) Query: 1 MRPVASVERDGGRLVLARYLEPLAPYLADNTLTEIVVNRPGELFVEGPNGWTRHEVAALT 60 M V S+ERDG RLVLARYLEPLAP+LAD +LTEIVVNRPGE+FVEGP GWTRHE ALT Sbjct: 1 MSAVHSIERDGSRLVLARYLEPLAPFLADKSLTEIVVNRPGEIFVEGPGGWTRHEAPALT 60 Query: 61 HTYLSHLATAAASHTRQDIGPEYPVVSTSLISEERCQIVVPPAVPAGTISLTIRKXSTLT 120 H YLSHLATAAA HTRQDI PE+PVVST+LI EERCQIVVPPAVPAG +SLTIRK S LT Sbjct: 61 HAYLSHLATAAAGHTRQDISPEHPVVSTTLIGEERCQIVVPPAVPAGMVSLTIRKPSALT 120 Query: 121 MNLDALERVKLFDEVRSASGELDANEHRLLALKEAGQWREFLELAVRSRRNILISGATGS 180 M L+A ER KLFDEVR A+ L A+E +LLALKEAG WR+FL+LAV +RRNI++SGATGS Sbjct: 121 MTLEAFERAKLFDEVRVANDRLTADETQLLALKEAGAWRDFLQLAVETRRNIIVSGATGS 180 Query: 181 GKTTLSKALIAAIPAHERLLTIEDTAELVIPHQNSVRLLYAKDGQGMAKIGPRELLESSL 240 GKTTLSKALIAAIPA ERL+TIEDTAELVIPHQN VRLLYAKDGQG+AKIGPRELLES L Sbjct: 181 GKTTLSKALIAAIPAQERLITIEDTAELVIPHQNCVRLLYAKDGQGVAKIGPRELLESCL 240 Query: 241 RMRPDRILLQELRDGTAFFYLRNVNSGHPGSITTVHADSARLAFEQMTLLVKESAEGRDL 300 RMRPDRILLQELRDGTAFFYLRNVNSGHPGSITTVHADSARLAFEQ+TLLVKESAEGRDL Sbjct: 241 RMRPDRILLQELRDGTAFFYLRNVNSGHPGSITTVHADSARLAFEQLTLLVKESAEGRDL 300 Query: 301 HRDDIRSLLLHLVDIVVQMQKRNGRYRISEIYYDPVRKRDH 341 HRDDIRSLLL LVD+V+QMQKRNGRYRISEIYYDP RKRDH Sbjct: 301 HRDDIRSLLLLLVDVVIQMQKRNGRYRISEIYYDPARKRDH 341 >ref|YP_001409512.1| P-type DNA transfer ATPase VirB11 [Xanthobacter autotrophicus Py2] gb|ABS70276.1| P-type DNA transfer ATPase VirB11 [Xanthobacter autotrophicus Py2] Length = 337 Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust. Identities = 198/326 (60%), Positives = 241/326 (73%) Query: 15 VLARYLEPLAPYLADNTLTEIVVNRPGELFVEGPNGWTRHEVAALTHTYLSHLATAAASH 74 V+ L PLA +L+D TL EIV+NRPG + EGP GW RHE LT L LA A AS+ Sbjct: 9 VVRDLLFPLAQFLSDETLYEIVINRPGVVLTEGPGGWRRHEAPDLTFEKLMRLARAVASY 68 Query: 75 TRQDIGPEYPVVSTSLISEERCQIVVPPAVPAGTISLTIRKXSTLTMNLDALERVKLFDE 134 + Q I +P++S +L E R QIV+PPA P GT+S+T+R S + + LD LE LF E Sbjct: 69 SHQAIDEAHPLLSATLPDEHRIQIVIPPATPKGTVSITLRNPSAVALTLDDLETAGLFSE 128 Query: 135 VRSASGELDANEHRLLALKEAGQWREFLELAVRSRRNILISGATGSGKTTLSKALIAAIP 194 V EL A + RLL L +AG + FL AV +R+NI+ISGAT SGKTTLSKALI IP Sbjct: 129 VSPIPDELSAADARLLELYQAGSYMPFLREAVLARKNIIISGATRSGKTTLSKALIQHIP 188 Query: 195 AHERLLTIEDTAELVIPHQNSVRLLYAKDGQGMAKIGPRELLESSLRMRPDRILLQELRD 254 ERL+TIEDT ELVIP N VRL Y+KDGQG+AKIG +ELLE+SLRMRPDR+LLQELRD Sbjct: 189 EDERLITIEDTPELVIPQDNHVRLFYSKDGQGLAKIGAKELLEASLRMRPDRVLLQELRD 248 Query: 255 GTAFFYLRNVNSGHPGSITTVHADSARLAFEQMTLLVKESAEGRDLHRDDIRSLLLHLVD 314 GTAF+Y+RNVNSGHPGSITTVHADSARLAFEQ+TLLVKES G DL R DIR LL +D Sbjct: 249 GTAFYYIRNVNSGHPGSITTVHADSARLAFEQLTLLVKESDGGHDLERSDIRDLLKIAID 308 Query: 315 IVVQMQKRNGRYRISEIYYDPVRKRD 340 ++VQ ++ +GR+R++EIY+DP + D Sbjct: 309 VIVQCKRVSGRFRVTEIYFDPHQDSD 334 >ref|YP_002823242.1| VirB11 type IV secretion protein [Sinorhizobium fredii NGR234] gb|ACP22489.1| VirB11 type IV secretion protein [Sinorhizobium fredii NGR234] Length = 331 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 189/320 (59%), Positives = 241/320 (75%) Query: 15 VLARYLEPLAPYLADNTLTEIVVNRPGELFVEGPNGWTRHEVAALTHTYLSHLATAAASH 74 V+ L PL+ +L D++L E+VVNRP E+ EG GW RH LT L LA A A++ Sbjct: 9 VVRELLSPLSSFLQDDSLYEVVVNRPREVLTEGAGGWVRHGAPELTFEKLIRLARAVATY 68 Query: 75 TRQDIGPEYPVVSTSLISEERCQIVVPPAVPAGTISLTIRKXSTLTMNLDALERVKLFDE 134 + Q I + P++S +L EER QIV+PPA GT+S+TIRK +++ ++L+ LER LF + Sbjct: 69 SNQAIDDQRPILSATLPDEERIQIVIPPATSKGTVSITIRKPASVAVSLEDLERQGLFSQ 128 Query: 135 VRSASGELDANEHRLLALKEAGQWREFLELAVRSRRNILISGATGSGKTTLSKALIAAIP 194 EL +++H LL L +AG + EFL AV +R+NI+ISGATGSGKTTLSKALI IP Sbjct: 129 TTPGGDELQSSDHGLLELHKAGAYTEFLRKAVLARKNIIISGATGSGKTTLSKALIRYIP 188 Query: 195 AHERLLTIEDTAELVIPHQNSVRLLYAKDGQGMAKIGPRELLESSLRMRPDRILLQELRD 254 HER+L+IEDT ELVIP N VRL Y+KDGQG+AKIG +ELLES LRMRPDRILLQELRD Sbjct: 189 DHERILSIEDTPELVIPQPNHVRLFYSKDGQGVAKIGAKELLESCLRMRPDRILLQELRD 248 Query: 255 GTAFFYLRNVNSGHPGSITTVHADSARLAFEQMTLLVKESAEGRDLHRDDIRSLLLHLVD 314 GTAF+++RNVNSGHPGSITTVHADS +LAFEQ+TLLVKES G+DL R DI SLL +D Sbjct: 249 GTAFYFIRNVNSGHPGSITTVHADSTKLAFEQLTLLVKESDGGKDLERQDIMSLLRIAID 308 Query: 315 IVVQMQKRNGRYRISEIYYD 334 +VVQ ++ +GR+ ++EIY+D Sbjct: 309 VVVQCKRIHGRFHVTEIYFD 328 >ref|YP_001610351.1| VblB11 protein [Bartonella tribocorum CIP 105476] emb|CAK02356.1| Vbh11 protein [Bartonella tribocorum CIP 105476] Length = 351 Score = 382 bits (981), Expect = e-104, Method: Compositional matrix adjust. Identities = 197/352 (55%), Positives = 251/352 (71%), Gaps = 15/352 (4%) Query: 1 MRPVA-SVERDGGRLVLARYLEPLAPYLADNTLTEIVVNRPGELFVEGPNGWTRHEVAAL 59 M P A + ER +VL + L+ L +L + L EIVVNRPGE+ VEGPNGW H + L Sbjct: 1 MMPTAKNAER--ASIVLTK-LKILDDFLNNENLFEIVVNRPGEVIVEGPNGWQTHTIQEL 57 Query: 60 THTYLSHLATAAASHTRQDIGPEYPVVSTSLISEERCQIVVPPAVPAGTISLTIRKXSTL 119 T++ L +A A++T Q I E PV+S +L + ER QIV+PPAV TIS+TIRK S+ Sbjct: 58 TYSELEGIAKVVAAYTTQKISVENPVLSATLPNNERIQIVMPPAVAPNTISMTIRKPSSR 117 Query: 120 TMNLDALERVKLFDEVRSAS-----------GELDANEHRLLALKEAGQWREFLELAVRS 168 T +L++L +LF +S S EL E L L A + +FLE AV + Sbjct: 118 TFSLESLNENQLFSVTQSVSFTPLKQMKQRENELSDTEKELTDLFIAKNFCKFLERAVIT 177 Query: 169 RRNILISGATGSGKTTLSKALIAAIPAHERLLTIEDTAELVIPHQNSVRLLYAKDGQGMA 228 ++NILISG TGSGKTTLSKALIA IP +ER+LTIEDT ELV+PH N V+L Y+KD QG+A Sbjct: 178 QQNILISGKTGSGKTTLSKALIAKIPDYERILTIEDTPELVVPHSNKVQLFYSKDNQGLA 237 Query: 229 KIGPRELLESSLRMRPDRILLQELRDGTAFFYLRNVNSGHPGSITTVHADSARLAFEQMT 288 K G +ELLES LRMRPDRILLQELRDGTAF+Y+RNVNSGHPGSITTVHA +A AFEQMT Sbjct: 238 KAGAKELLESGLRMRPDRILLQELRDGTAFYYIRNVNSGHPGSITTVHASTALAAFEQMT 297 Query: 289 LLVKESAEGRDLHRDDIRSLLLHLVDIVVQMQKRNGRYRISEIYYDPVRKRD 340 LLVKES G +L RDDIR LL+ ++D+++Q ++ G++R++EIYYDP ++RD Sbjct: 298 LLVKESDGGGNLARDDIRGLLISMIDVIIQCKRLEGKFRVTEIYYDPFKRRD 349 >gb|ADN97083.1| VblB11 protein [Bartonella sp. TT0105] Length = 350 Score = 381 bits (978), Expect = e-104, Method: Compositional matrix adjust. Identities = 192/338 (56%), Positives = 245/338 (72%), Gaps = 12/338 (3%) Query: 14 LVLARYLEPLAPYLADNTLTEIVVNRPGELFVEGPNGWTRHEVAALTHTYLSHLATAAAS 73 +VL + L+ L +L + L EIVVNRPGE+ VEGPNGW H + LT++ L +A A+ Sbjct: 12 IVLTK-LKILDDFLNNENLFEIVVNRPGEVIVEGPNGWQTHTIQELTYSELEGIAKVVAA 70 Query: 74 HTRQDIGPEYPVVSTSLISEERCQIVVPPAVPAGTISLTIRKXSTLTMNLDALERVKLFD 133 +T Q I E PV+S +L + ER QIV+PPAV TIS+TIRK S+ T +L++L +LF Sbjct: 71 YTTQKISVENPVLSATLPNNERIQIVMPPAVAPNTISMTIRKPSSRTFSLESLNENQLFS 130 Query: 134 EVRSAS-----------GELDANEHRLLALKEAGQWREFLELAVRSRRNILISGATGSGK 182 +S S EL E L L A + +FLE AV +++NILISG TGSGK Sbjct: 131 VTQSVSFTPLKQMKQRENELSDTEKELTDLFIAKDFCKFLERAVITQQNILISGKTGSGK 190 Query: 183 TTLSKALIAAIPAHERLLTIEDTAELVIPHQNSVRLLYAKDGQGMAKIGPRELLESSLRM 242 TTLSKALIA IP +ER+LTIEDT ELV+PH N V+L Y+KD QG+AK G +ELLES LRM Sbjct: 191 TTLSKALIAKIPDYERILTIEDTPELVVPHSNKVQLFYSKDNQGLAKAGAKELLESGLRM 250 Query: 243 RPDRILLQELRDGTAFFYLRNVNSGHPGSITTVHADSARLAFEQMTLLVKESAEGRDLHR 302 RPDRILLQELRDGTAF+Y+RNVNSGHPGSITTVHA +A AFEQMTLLVKES G +L R Sbjct: 251 RPDRILLQELRDGTAFYYIRNVNSGHPGSITTVHASTALAAFEQMTLLVKESDGGGNLAR 310 Query: 303 DDIRSLLLHLVDIVVQMQKRNGRYRISEIYYDPVRKRD 340 DDIR LL+ ++D+++Q ++ G++R++EIYYDP ++RD Sbjct: 311 DDIRGLLISMIDVIIQCKRLEGKFRVTEIYYDPFKRRD 348