BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0080.0078.p (283 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001220559.1| Type IV secretory pathway AvhB9 protein [Bra... 502 e-140 ref|YP_665957.1| conjugal transfer protein TrbG/VirB9/CagX [Meso... 325 4e-87 gb|EGE59360.1| transport secretion system IV protein, VirB9 [Rhi... 318 8e-85 ref|YP_001985522.1| transport secretion system IV protein, VirB9... 316 2e-84 ref|ZP_03502457.1| transport secretion system IV, VirB9 protein ... 310 2e-82 >ref|YP_001220559.1| Type IV secretory pathway AvhB9 protein [Bradyrhizobium sp. BTAi1] gb|ABQ39887.1| Type IV secretory pathway AvhB9 protein [Bradyrhizobium sp. BTAi1] Length = 283 Score = 502 bits (1293), Expect = e-140, Method: Compositional matrix adjust. Identities = 261/283 (92%), Positives = 272/283 (96%) Query: 1 MKRFALLATLALGFAGPVLALQQPTPGQHDARVRTVTYDPANVVRLNGVIRASTQVVFAD 60 MK F LL ALGFAGPVLALQQP+PGQHDARVRTVTYDPANVVR+NGVIRASTQV+FAD Sbjct: 1 MKSFVLLLIFALGFAGPVLALQQPSPGQHDARVRTVTYDPANVVRVNGVIRASTQVLFAD 60 Query: 61 DEEIAHVAIGDAIAWEVAPAGSILFLKPREKHPPTNLQVVTTRPDGRKRSYQFELSIAET 120 DEE+AHVAIGDAIAWEVAPAGSILFLKPREKHPPTNLQVVTTRPDGRKRSYQFELSIAET Sbjct: 61 DEEVAHVAIGDAIAWEVAPAGSILFLKPREKHPPTNLQVVTTRPDGRKRSYQFELSIAET 120 Query: 121 TLADSYFVVRFAYPGDEIERRRIEAAARGAEREGALIEQTFDLHHAYGARNWRFSAQGSI 180 TLADSYFVVRFAYPGDEIERRR EAAARGAEREG+LI+QTFDLHHAYGARNWRFSAQGS+ Sbjct: 121 TLADSYFVVRFAYPGDEIERRRAEAAARGAEREGSLIDQTFDLHHAYGARNWRFSAQGSV 180 Query: 181 DLEPEAVFDDGKETTFRFAGNREIPAIYLINSDGSESLVPKDVRGELVVVHATAREFRLR 240 DLEPEAVFDDGKETTFRFAGNREIPAIYLINSDGSESLVPKDVRGELVVVHATAREFRLR Sbjct: 181 DLEPEAVFDDGKETTFRFAGNREIPAIYLINSDGSESLVPKDVRGELVVVHATAREFRLR 240 Query: 241 KGDIVLCIFNEAFDAVGVNPGTNTTSPLVERRAKRSSPTPKAR 283 KGD VLCIFNEAFDAVG+NPGTNTTSP +ERRAK+SSP + R Sbjct: 241 KGDNVLCIFNEAFDAVGINPGTNTTSPSIERRAKKSSPISRPR 283 >ref|YP_665957.1| conjugal transfer protein TrbG/VirB9/CagX [Mesorhizobium sp. BNC1] gb|ABG61310.1| Conjugal transfer protein TrbG/VirB9/CagX [Chelativorans sp. BNC1] Length = 285 Score = 325 bits (833), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 158/276 (57%), Positives = 200/276 (72%), Gaps = 3/276 (1%) Query: 2 KRFALLATLALGFAGPVLALQQPTPGQHDARVRTVTYDPANVVRLNGVIRASTQVVFADD 61 + F +A +A A PV L+ PT Q D RVR V+Y P N+ R+ G IR+S QV FA D Sbjct: 4 RSFLAVAIIAALTAFPVQTLEIPTSAQQDNRVRFVSYQPYNITRIVGTIRSSVQVEFAPD 63 Query: 62 EEIAHVAIGDAIAWEVAPAGSILFLKPREKHPPTNLQVVTTRPDGRKRSYQFELSIAETT 121 EEIAHVA+G+ +AWEVAPAG ILFLKPRE P TN+ VVTTR DG KRSYQ EL + + + Sbjct: 64 EEIAHVALGNTVAWEVAPAGHILFLKPRENQPATNISVVTTRRDGSKRSYQMELVVRDGS 123 Query: 122 L---ADSYFVVRFAYPGDEIERRRIEAAARGAEREGALIEQTFDLHHAYGARNWRFSAQG 178 + ++YF V++ YP DE ERRR+E A+ E +Q +H YG RNWR+SAQG Sbjct: 124 VDAGQNTYFYVKYRYPADEAERRRLEDEAKKRAAEAGYADQVLGIHEQYGPRNWRYSAQG 183 Query: 179 SIDLEPEAVFDDGKETTFRFAGNREIPAIYLINSDGSESLVPKDVRGELVVVHATAREFR 238 S +EP+AV+D+GK TTF F+GN+E+PAIY+ NSDG+ESLVPK V+G+LV+VHA +R+F Sbjct: 184 SAAIEPQAVYDNGKVTTFAFSGNQEMPAIYIENSDGTESLVPKTVQGDLVLVHAISRKFI 243 Query: 239 LRKGDIVLCIFNEAFDAVGVNPGTNTTSPLVERRAK 274 LR+G LCIFNEA+ VGV+PGTNTTSP VER K Sbjct: 244 LRRGSDTLCIFNEAYSPVGVDPGTNTTSPSVERVVK 279 >gb|EGE59360.1| transport secretion system IV protein, VirB9 [Rhizobium etli CNPAF512] Length = 285 Score = 318 bits (814), Expect = 8e-85, Method: Compositional matrix adjust. Identities = 158/275 (57%), Positives = 201/275 (73%), Gaps = 3/275 (1%) Query: 3 RFALLATLALGFAGPVLALQQPTPGQHDARVRTVTYDPANVVRLNGVIRASTQVVFADDE 62 RF L L GF+ LAL+ P D+R+R V Y P N+ ++ G +R+S Q+ FA DE Sbjct: 4 RFLLPLILVTGFSSAALALETPRGATQDSRIRFVDYQPYNITKVVGTLRSSVQIEFAADE 63 Query: 63 EIAHVAIGDAIAWEVAPAGSILFLKPREKHPPTNLQVVTTRPDGRKRSYQFELSIAETTL 122 EIAHVA+G+++AWEVAPAG+ILFLKPRE P TN+ VVTTR DG RSYQ EL++ + ++ Sbjct: 64 EIAHVALGNSVAWEVAPAGNILFLKPRENQPVTNISVVTTRRDGSTRSYQMELTVRDGSV 123 Query: 123 ---ADSYFVVRFAYPGDEIERRRIEAAARGAEREGALIEQTFDLHHAYGARNWRFSAQGS 179 ++YF V++ YP DE ERRR+EA+AR + ++ LH AYG RNWR+SAQGS Sbjct: 124 EAGQNTYFYVKYRYPADEAERRRLEASARAQAAQAGEADRVLALHEAYGPRNWRYSAQGS 183 Query: 180 IDLEPEAVFDDGKETTFRFAGNREIPAIYLINSDGSESLVPKDVRGELVVVHATAREFRL 239 LEP+AV+D+GK TTF FAGN+E+PAIY+ NSDGSESLVPK V G LV+VHA +R+F L Sbjct: 184 QALEPQAVYDNGKVTTFAFAGNQEMPAIYMENSDGSESLVPKSVDGNLVLVHAISRKFIL 243 Query: 240 RKGDIVLCIFNEAFDAVGVNPGTNTTSPLVERRAK 274 R+G VLC+FNEA+D VG NP TNTTSP VER K Sbjct: 244 RRGGDVLCVFNEAYDRVGTNPETNTTSPSVERVVK 278 >ref|YP_001985522.1| transport secretion system IV protein, VirB9 [Rhizobium etli CIAT 652] gb|ACE94972.1| transport secretion system IV protein, VirB9 [Rhizobium etli CIAT 652] Length = 284 Score = 316 bits (810), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 151/268 (56%), Positives = 196/268 (73%), Gaps = 3/268 (1%) Query: 10 LALGFAGPVLALQQPTPGQHDARVRTVTYDPANVVRLNGVIRASTQVVFADDEEIAHVAI 69 LA + PVLAL+ P D+R+R V Y P N+ ++ G +R+S Q+ FA DEEIAHVA+ Sbjct: 11 LAGSLSSPVLALETPRGAAQDSRIRFVDYQPYNITKVVGTLRSSVQIEFAADEEIAHVAL 70 Query: 70 GDAIAWEVAPAGSILFLKPREKHPPTNLQVVTTRPDGRKRSYQFELSIAETTL---ADSY 126 G+++AWEVAPAG+ILFLKPRE P TN+ VVTTR DG RSYQ EL++ + ++ ++Y Sbjct: 71 GNSVAWEVAPAGNILFLKPRENQPVTNISVVTTRRDGSTRSYQMELTVRDGSVEAGQNTY 130 Query: 127 FVVRFAYPGDEIERRRIEAAARGAEREGALIEQTFDLHHAYGARNWRFSAQGSIDLEPEA 186 F V++ YP DE ERRR EA R + ++ LH A+G RNWR+SAQGS LEP+A Sbjct: 131 FYVKYRYPADEAERRRQEAVTRAQAAQAGEADRVLALHEAFGPRNWRYSAQGSQALEPQA 190 Query: 187 VFDDGKETTFRFAGNREIPAIYLINSDGSESLVPKDVRGELVVVHATAREFRLRKGDIVL 246 V+D+GK T+F F GN+E+PAIY+ NSDGSESLVPK V G LV+VHA +R+F LR+G VL Sbjct: 191 VYDNGKVTSFAFVGNQEMPAIYMENSDGSESLVPKSVDGNLVLVHAISRKFILRRGGDVL 250 Query: 247 CIFNEAFDAVGVNPGTNTTSPLVERRAK 274 C+FNEA+D VG+NP TNTTSP V+R K Sbjct: 251 CVFNEAYDRVGINPETNTTSPSVKRVVK 278 >ref|ZP_03502457.1| transport secretion system IV, VirB9 protein [Rhizobium etli Kim 5] Length = 285 Score = 310 bits (794), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 150/261 (57%), Positives = 190/261 (72%), Gaps = 3/261 (1%) Query: 19 LALQQPTPGQHDARVRTVTYDPANVVRLNGVIRASTQVVFADDEEIAHVAIGDAIAWEVA 78 LAL+ P Q D+R+R V + P N+ ++ G +R+S Q+ F+ DEEIAHVA+G+ +AWEVA Sbjct: 20 LALETPRGAQQDSRIRFVDFQPYNITKVVGTLRSSVQIEFSADEEIAHVALGNGVAWEVA 79 Query: 79 PAGSILFLKPREKHPPTNLQVVTTRPDGRKRSYQFELSIAETTL---ADSYFVVRFAYPG 135 PAG+ILFLKPRE P TN+ VVTTR DG RSYQ EL++ + ++ ++YF V++ YP Sbjct: 80 PAGNILFLKPRENQPVTNISVVTTRRDGSTRSYQMELTVRDGSVEAGQNTYFYVKYRYPA 139 Query: 136 DEIERRRIEAAARGAEREGALIEQTFDLHHAYGARNWRFSAQGSIDLEPEAVFDDGKETT 195 DE ERRR EA AR + ++ LH AYG RNWR+SAQGS LEP+AV+D+GK TT Sbjct: 140 DEAERRRQEAVARTQAAQAGQADRVLALHEAYGPRNWRYSAQGSQALEPQAVYDNGKLTT 199 Query: 196 FRFAGNREIPAIYLINSDGSESLVPKDVRGELVVVHATAREFRLRKGDIVLCIFNEAFDA 255 F F GN+E+PAIY NSDGSES VPK V G LV+VHA +R+F LR+G VLC+FNEAFD Sbjct: 200 FAFVGNQEMPAIYTENSDGSESFVPKSVDGNLVLVHAISRKFILRRGGDVLCVFNEAFDR 259 Query: 256 VGVNPGTNTTSPLVERRAKRS 276 VG+NP T TTSP VER K S Sbjct: 260 VGINPETFTTSPSVERVVKTS 280