BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0080.0076.p (361 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001220562.1| Type IV secretory pathway AvhB6 protein [Bra... 444 e-122 ref|YP_001985525.1| transport secretion system IV protein, VirB6... 199 5e-49 ref|YP_004280476.1| type IV secretion protein AvhB6 [Agrobacteri... 197 2e-48 ref|NP_396097.2| type IV secretion protein AvhB6 [Agrobacterium ... 197 3e-48 ref|ZP_04681628.1| Protein virB6 [Ochrobactrum intermedium LMG 3... 195 1e-47 >ref|YP_001220562.1| Type IV secretory pathway AvhB6 protein [Bradyrhizobium sp. BTAi1] gb|ABQ39890.1| Type IV secretory pathway AvhB6 protein [Bradyrhizobium sp. BTAi1] Length = 328 Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust. Identities = 272/304 (89%), Positives = 286/304 (94%), Gaps = 4/304 (1%) Query: 1 MAVNIFDSFLKEFEQPITAFVSTSVSNLATYIDGPLRTAVMLYVILYGFAVMRGAISEPI 60 MA+N+FDSFLKEFEQPIT FVSTSVSNLA+YIDGPLRTAVMLYVILYGFAVMRGAISEPI Sbjct: 1 MAINVFDSFLKEFEQPITTFVSTSVSNLASYIDGPLRTAVMLYVILYGFAVMRGAISEPI 60 Query: 61 MEFAWRAMRIVVVVLLATNSSAFQQYVTSLFFDSLPKEIGNALAGSGLNTSSGAPFDQLL 120 MEFAWRAMRIVVVVLLATNSSAFQQYVT LFFDSLPKEIGNALAG+GLNT+SG PFDQLL Sbjct: 61 MEFAWRAMRIVVVVLLATNSSAFQQYVTGLFFDSLPKEIGNALAGAGLNTNSGVPFDQLL 120 Query: 121 SKGIDVANKIYDQAGITDVAPALIAGILLVFVAVGSFLQFAILLYAKVGLGVVIALGPIF 180 +KGIDVAN+IY QAG+T++APALIA ILLVFVAVGSFLQFAILLYAKVGLGVVIALGP+F Sbjct: 121 TKGIDVANRIYKQAGLTNIAPALIAAILLVFVAVGSFLQFAILLYAKVGLGVVIALGPLF 180 Query: 181 IALGLFEATRPFTEAWLRQLANFVILLVLVVALVGLMLSTVSGFIDRFGANAGTAGEMVV 240 IALGLFEATRPFTEAWLRQ+ANFVILLVLVVALVGLML+TVSGFIDRF ANAGTAGEMVV Sbjct: 181 IALGLFEATRPFTEAWLRQVANFVILLVLVVALVGLMLTTVSGFIDRFAANAGTAGEMVV 240 Query: 241 AAVAISAVLGLSGYIALQLPII----AGGLAGGASRLVTSPLIANATATAGGAYAGARWS 296 AAVAISAVLGLSGYIALQLPII AGG A ASRLVTSP+IANATA A GAYAGARWS Sbjct: 241 AAVAISAVLGLSGYIALQLPIIAGGLAGGGASLASRLVTSPMIANATAAASGAYAGARWS 300 Query: 297 XPTG 300 G Sbjct: 301 ASRG 304 >ref|YP_001985525.1| transport secretion system IV protein, VirB6 [Rhizobium etli CIAT 652] gb|ACE94975.1| transport secretion system IV protein, VirB6 [Rhizobium etli CIAT 652] Length = 310 Score = 199 bits (507), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 107/254 (42%), Positives = 170/254 (66%), Gaps = 15/254 (5%) Query: 12 EFEQPITAFVSTSVSNLATYIDGPLRTAVMLYVILYGFAVMRGAISEPIMEFAWRAMRIV 71 +F+ P+ F+S+ SN+A+++ GPL A+ LYV+LYG+ V+RG++ EPI+EFA+RAM++ Sbjct: 11 QFKTPLENFISSGTSNIASWVSGPLTAALTLYVVLYGYLVLRGSVQEPILEFAFRAMKLA 70 Query: 72 VVVLLATNSSAFQQYVTSLFFDSLPKEIGNALAGSGLNTSSGAPFDQLLSKGIDVANKIY 131 ++V+L N+S +Q YVT++FFD+LP+EI AL SG S + FD LL KG + A++I+ Sbjct: 71 IIVMLVRNASDYQTYVTNIFFDALPREISQAL-NSG-TVPSASTFDSLLDKGQNCAHEIW 128 Query: 132 DQAG-----ITDVAPALIAGILLVFVAVGSFLQFAILLYAKVGLGVVIALGPIFIALGLF 186 +A +T + ++ G V A+G + + LYA++ L VV+A+GPIFIAL +F Sbjct: 129 SRASWPVDIVTGIGGMMVIGASFVVAAIG----YIVSLYARLALAVVLAIGPIFIALAMF 184 Query: 187 EATRPFTEAWLRQLANFVILLVLVVALVGLMLSTVSGFIDRFGANAGTAGEMVVAAVAIS 246 ++TR FTE+W+ QL NFVIL VLVVA+ L+++ ID + ++++ VA+S Sbjct: 185 QSTRRFTESWIGQLVNFVILQVLVVAIGSLLITC----IDTTFTAIESYSDVLMRPVALS 240 Query: 247 AVLGLSGYIALQLP 260 A+ + Y+ QLP Sbjct: 241 AICVAALYVFYQLP 254 >ref|YP_004280476.1| type IV secretion protein AvhB6 [Agrobacterium sp. H13-3] gb|ADY68098.1| type IV secretion protein AvhB6 [Agrobacterium sp. H13-3] Length = 311 Score = 197 bits (501), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 112/277 (40%), Positives = 176/277 (63%), Gaps = 17/277 (6%) Query: 4 NIFDSFLKEFEQPITAFVSTSVSNLATYIDGPLRTAVMLYVILYGFAVMRGAISEPIMEF 63 +F+ +F++P+ FVS SN+A ++ GPL AV LYV+LYG+ ++RG++ EPI++F Sbjct: 3 QVFEFIDGQFKRPLETFVSDGTSNIAEWVAGPLTVAVTLYVVLYGYLILRGSVQEPILDF 62 Query: 64 AWRAMRIVVVVLLATNSSAFQQYVTSLFFDSLPKEIGNAL-AGSGLNTSSGAPFDQLLSK 122 A+RAM++ ++V+L N+ +Q YVT++FFD LP+EI AL AG+ + S+ FD LL K Sbjct: 63 AFRAMKLAIIVMLVKNAGEYQTYVTNIFFDVLPREIAQALNAGTAPSAST---FDSLLDK 119 Query: 123 GIDVANKIYDQAG-----ITDVAPALIAGILLVFVAVGSFLQFAILLYAKVGLGVVIALG 177 G A I+ +A +T V ++ G+ + +G + + LYA++ L +V+A+G Sbjct: 120 GQASATDIWTRASWPIDIVTGVGGIMVIGVSFLVAGIG----YVVSLYARLALAIVLAIG 175 Query: 178 PIFIALGLFEATRPFTEAWLRQLANFVILLVLVVALVGLMLSTVSGFIDRFGANAGTAGE 237 PIFIAL +F++TR FTE+W+ QLANFVIL VLVVA+ L++S +D + + Sbjct: 176 PIFIALAMFQSTRRFTESWIGQLANFVILQVLVVAVGSLLISC----LDSSFTAIDSYSD 231 Query: 238 MVVAAVAISAVLGLSGYIALQLPIIAGGLAGGASRLV 274 +++ +A A+ + YI QLP IA LA G + LV Sbjct: 232 VLMRPIAFCAIGIAALYIFYQLPGIASALASGGASLV 268 >ref|NP_396097.2| type IV secretion protein AvhB6 [Agrobacterium tumefaciens str. C58] gb|AAL04064.1|AF396671_5 AvhB6 [Agrobacterium tumefaciens] gb|AAK90538.2| type IV secretion protein AvhB6 [Agrobacterium tumefaciens str. C58] Length = 311 Score = 197 bits (500), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 112/277 (40%), Positives = 176/277 (63%), Gaps = 17/277 (6%) Query: 4 NIFDSFLKEFEQPITAFVSTSVSNLATYIDGPLRTAVMLYVILYGFAVMRGAISEPIMEF 63 +F+ +F++P+ FVS SN+A ++ GPL AV LYV+LYG+ ++RG++ EPI++F Sbjct: 3 QVFEFIDGQFKRPLEIFVSDGTSNIAEWVAGPLTVAVTLYVVLYGYLILRGSVQEPILDF 62 Query: 64 AWRAMRIVVVVLLATNSSAFQQYVTSLFFDSLPKEIGNAL-AGSGLNTSSGAPFDQLLSK 122 A+RAM++ ++V+L N+ +Q YVT++FFD LP+EI AL AG+ + S+ FD LL K Sbjct: 63 AFRAMKLAIIVMLVKNAGEYQTYVTNIFFDVLPREIAQALNAGTAPSAST---FDSLLDK 119 Query: 123 GIDVANKIYDQAG-----ITDVAPALIAGILLVFVAVGSFLQFAILLYAKVGLGVVIALG 177 G A I+ +A +T V ++ G+ + +G + + LYA++ L +V+A+G Sbjct: 120 GQASATDIWTRASWPIDIVTGVGGIMVIGVSFLVAGIG----YVVSLYARLALAIVLAIG 175 Query: 178 PIFIALGLFEATRPFTEAWLRQLANFVILLVLVVALVGLMLSTVSGFIDRFGANAGTAGE 237 PIFIAL +F++TR FTE+W+ QLANFVIL VLVVA+ L++S +D + + Sbjct: 176 PIFIALAMFQSTRRFTESWIGQLANFVILQVLVVAVGSLLISC----LDSTFTAIDSYSD 231 Query: 238 MVVAAVAISAVLGLSGYIALQLPIIAGGLAGGASRLV 274 +++ +A A+ + YI QLP IA LA G + LV Sbjct: 232 VLMRPIAFCAIGIAALYIFYQLPGIASALASGGASLV 268 >ref|ZP_04681628.1| Protein virB6 [Ochrobactrum intermedium LMG 3301] gb|EEQ92932.1| Protein virB6 [Ochrobactrum intermedium LMG 3301] Length = 311 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 111/276 (40%), Positives = 174/276 (63%), Gaps = 17/276 (6%) Query: 4 NIFDSFLKEFEQPITAFVSTSVSNLATYIDGPLRTAVMLYVILYGFAVMRGAISEPIMEF 63 +FD +F+QP+ FVS SN+A +I GPL AV LY++LYG+ V+RG++SEPI+EF Sbjct: 3 QVFDFIDGQFKQPLETFVSDGTSNIAQWITGPLTVAVTLYIVLYGYLVLRGSVSEPILEF 62 Query: 64 AWRAMRIVVVVLLATNSSAFQQYVTSLFFDSLPKEIGNAL-AGSGLNTSSGAPFDQLLSK 122 +RA+++ ++V L N+ +Q YVT++FF+ LP EI AL +G+ ++S+ FD LL K Sbjct: 63 VFRAIKLAIIVTLVKNAGDYQTYVTNVFFNVLPHEIAGALNSGTAPDSST---FDSLLDK 119 Query: 123 GIDVANKIYDQAG-----ITDVAPALIAGILLVFVAVGSFLQFAILLYAKVGLGVVIALG 177 G A I+ +A +T VA L+ + + +G + + LYA++ L +++A+G Sbjct: 120 GQASATDIWSRASWPIDIVTGVAGILVIAVSFLVAGIG----YVVSLYARLALAIILAIG 175 Query: 178 PIFIALGLFEATRPFTEAWLRQLANFVILLVLVVALVGLMLSTVSGFIDRFGANAGTAGE 237 PIF+AL LF++TR FTEAW+ QL NFVIL VLVVA+ L++S + A + + Sbjct: 176 PIFVALALFQSTRRFTEAWIGQLVNFVILQVLVVAVGSLLISCIDSTFTAINAYS----D 231 Query: 238 MVVAAVAISAVLGLSGYIALQLPIIAGGLAGGASRL 273 +++ +A+ A+ + Y+ QLP IA LA G + L Sbjct: 232 VLMRPIALCAIGIAALYVFYQLPGIASALASGGASL 267