BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0080.0074.p (240 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001220564.1| Type IV secretory pathway AvhB5 protein [Bra... 434 e-120 ref|YP_004551544.1| P-type DNA transfer protein VirB5 [Sinorhizo... 192 5e-47 ref|NP_435961.2| VirB5 type IV secretion protein [Sinorhizobium ... 191 9e-47 ref|YP_004280474.1| type IV secretion protein AvhB5 [Agrobacteri... 186 2e-45 gb|AEH82017.1| VirB5 type IV secretion protein [Sinorhizobium me... 186 4e-45 >ref|YP_001220564.1| Type IV secretory pathway AvhB5 protein [Bradyrhizobium sp. BTAi1] gb|ABQ39892.1| Type IV secretory pathway AvhB5 protein [Bradyrhizobium sp. BTAi1] Length = 240 Score = 434 bits (1116), Expect = e-120, Method: Compositional matrix adjust. Identities = 212/240 (88%), Positives = 223/240 (92%) Query: 1 MITQRMPAVFASLSVMTLLMIPPARAEIVFDPSVYARQFEQLTELKKQVDTLTSQLKVAQ 60 M QRMP + + VM LM PA AEIVFDPSVYARQFEQLTELKKQVDTLTSQLKVAQ Sbjct: 1 MTVQRMPGILPFVPVMIFLMASPAGAEIVFDPSVYARQFEQLTELKKQVDTLTSQLKVAQ 60 Query: 61 DQLSQAKQLYDSFNKRTNANDIGALLNTPQFRKVLPQQFADIERLVAGQGGGNFADAINH 120 DQL+QAKQLYDSFNKRTNANDIGALLNTPQFRKVLPQQF+DIERLVAGQGGGNFADA+N Sbjct: 61 DQLNQAKQLYDSFNKRTNANDIGALLNTPQFRKVLPQQFSDIERLVAGQGGGNFADAMNQ 120 Query: 121 YLSQNRAYAGNSGNSYYQSELDRIARQTGAKHSMGQAIYDTASQRIDALEELRARISSAT 180 YLSQNRAYAGNSGNSYYQSELDRIARQTGAKHSMGQA+YDTASQRIDALEELR RISSAT Sbjct: 121 YLSQNRAYAGNSGNSYYQSELDRIARQTGAKHSMGQAVYDTASQRIDALEELRTRISSAT 180 Query: 181 DAKEVLDLSARLQAEQALLQNDVLRMQGLAMIQQARADMDGQRERERRRQLVDEMKAALQ 240 D KE LDLSARLQAEQALLQNDVLRMQGLAMIQQAR DMDGQRERE+++QL+DEMKAAL+ Sbjct: 181 DVKETLDLSARLQAEQALLQNDVLRMQGLAMIQQARTDMDGQREREKQQQLIDEMKAALE 240 >ref|YP_004551544.1| P-type DNA transfer protein VirB5 [Sinorhizobium meliloti AK83] gb|AEG57421.1| P-type DNA transfer protein VirB5 [Sinorhizobium meliloti AK83] Length = 233 Score = 192 bits (487), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 99/212 (46%), Positives = 139/212 (65%), Gaps = 7/212 (3%) Query: 29 VFDPSVYARQFEQLTELKKQVDTLTSQLKVAQDQLSQAKQLYDSFNKRTNANDIGALLNT 88 V D + A+Q E + +LK Q+D L Q++ QA+QL+ S NK T+ +D+ ++LN Sbjct: 29 VIDQTAIAKQIESIAQLKAQLDALNQQIE-------QAQQLHGSLNKLTDMSDVASVLND 81 Query: 89 PQFRKVLPQQFADIERLVAGQGGGNFADAINHYLSQNRAYAGNSGNSYYQSELDRIARQT 148 P RK LP F+ IE L G G G FAD+ + +L N Y N+ + +Y EL RI + Sbjct: 82 PAIRKALPADFSAIEGLFKGNGTGVFADSASKFLEGNTTYQTNAADDFYAQELSRIQNKN 141 Query: 149 GAKHSMGQAIYDTASQRIDALEELRARISSATDAKEVLDLSARLQAEQALLQNDVLRMQG 208 + S+GQ IYD A++RID +++LR +IS+A DAK++ DL ARLQAEQA LQ DVLRM+G Sbjct: 142 AGQMSLGQQIYDAATKRIDGIDQLREKISTAGDAKDIADLQARLQAEQAFLQTDVLRMEG 201 Query: 209 LAMIQQARADMDGQRERERRRQLVDEMKAALQ 240 L M+QQA+ +D QR+ E RQ +D +KAALQ Sbjct: 202 LRMVQQAQVQIDEQRKAEDWRQRMDAIKAALQ 233 >ref|NP_435961.2| VirB5 type IV secretion protein [Sinorhizobium meliloti 1021] gb|AAK65373.2| VirB5 type IV secretion protein [Sinorhizobium meliloti 1021] gb|AEG07347.1| P-type DNA transfer protein VirB5 [Sinorhizobium meliloti BL225C] Length = 233 Score = 191 bits (484), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 99/212 (46%), Positives = 139/212 (65%), Gaps = 7/212 (3%) Query: 29 VFDPSVYARQFEQLTELKKQVDTLTSQLKVAQDQLSQAKQLYDSFNKRTNANDIGALLNT 88 V D + A+Q E + +LK Q+D L Q++ QA+QL+ S NK T+ +D+ ++LN Sbjct: 29 VIDQTAIAKQIESIAQLKAQLDALNQQIE-------QAQQLHGSLNKLTDMSDVASVLND 81 Query: 89 PQFRKVLPQQFADIERLVAGQGGGNFADAINHYLSQNRAYAGNSGNSYYQSELDRIARQT 148 P RK LP F+ IE L G G G FAD+ + +L N Y N+ + +Y EL RI + Sbjct: 82 PAIRKALPADFSAIEGLFKGNGTGVFADSASKFLDGNTTYQTNAADDFYAQELSRIQNKN 141 Query: 149 GAKHSMGQAIYDTASQRIDALEELRARISSATDAKEVLDLSARLQAEQALLQNDVLRMQG 208 + S+GQ IYD A++RID +++LR +IS+A DAK++ DL ARLQAEQA LQ DVLRM+G Sbjct: 142 AGQMSLGQQIYDAATKRIDGIDQLREKISTAGDAKDIADLQARLQAEQAFLQTDVLRMEG 201 Query: 209 LAMIQQARADMDGQRERERRRQLVDEMKAALQ 240 L M+QQA+ +D QR+ E RQ +D +KAALQ Sbjct: 202 LRMVQQAQEQVDEQRKAEDWRQRMDAIKAALQ 233 >ref|YP_004280474.1| type IV secretion protein AvhB5 [Agrobacterium sp. H13-3] gb|ADY68096.1| type IV secretion protein AvhB5 [Agrobacterium sp. H13-3] Length = 232 Score = 186 bits (473), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 103/240 (42%), Positives = 146/240 (60%), Gaps = 8/240 (3%) Query: 1 MITQRMPAVFASLSVMTLLMIPPARAEIVFDPSVYARQFEQLTELKKQVDTLTSQLKVAQ 60 M + R+ V S +M + V D + A+Q E + +LK Q+D L Sbjct: 1 MTSYRLHGVLLSAVLMLAAEGASGQGIPVNDQAAIAKQIESIAQLKSQLDALN------- 53 Query: 61 DQLSQAKQLYDSFNKRTNANDIGALLNTPQFRKVLPQQFADIERLVAGQGGGNFADAINH 120 +Q+ QA+QLY S NK T+ D+ +LN P RK LP FA IE L+ G G G F D+ + Sbjct: 54 EQIGQARQLYGSLNKLTDMADVAEVLNDPAIRKALPSDFAAIEGLLKGNGTGVFGDSASR 113 Query: 121 YLSQNRAYAGNSGNSYYQSELDRIARQTGAKHSMGQAIYDTASQRIDALEELRARISSAT 180 +L N Y ++ + +Y EL R+ + + S+G+ IYD A++RI+ +++LR +IS+A Sbjct: 114 FLEGNSTYRTDA-DDFYAQELSRLQNKNAGQMSLGEQIYDAATKRINGIDQLRGKISTAG 172 Query: 181 DAKEVLDLSARLQAEQALLQNDVLRMQGLAMIQQARADMDGQRERERRRQLVDEMKAALQ 240 DAKE+ DL ARLQAEQA LQ DVLRM+GL M+QQA+ +D QR+ E RQ +D MKAALQ Sbjct: 173 DAKEIADLQARLQAEQAFLQTDVLRMEGLRMVQQAQNQVDEQRKAEDWRQRMDNMKAALQ 232 >gb|AEH82017.1| VirB5 type IV secretion protein [Sinorhizobium meliloti SM11] Length = 233 Score = 186 bits (471), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 99/212 (46%), Positives = 135/212 (63%), Gaps = 7/212 (3%) Query: 29 VFDPSVYARQFEQLTELKKQVDTLTSQLKVAQDQLSQAKQLYDSFNKRTNANDIGALLNT 88 V D + A+Q E + +LK Q+D L Q++ QA+QL+ S NK T+ D+ + LN Sbjct: 29 VIDQTAIAKQIESIAQLKVQLDALNQQIE-------QAQQLHGSLNKLTDMADVASALND 81 Query: 89 PQFRKVLPQQFADIERLVAGQGGGNFADAINHYLSQNRAYAGNSGNSYYQSELDRIARQT 148 P RK LP F+ IE L G G FAD+ + L N Y N+ + +Y EL RI + Sbjct: 82 PAIRKALPADFSAIEDLFKGNSTGVFADSASKLLEGNTTYQTNAADDFYAQELSRIQNKN 141 Query: 149 GAKHSMGQAIYDTASQRIDALEELRARISSATDAKEVLDLSARLQAEQALLQNDVLRMQG 208 + S+GQ IYD A++RID +++LR +IS+A DAK++ DL ARLQAEQA LQ DVLRM+G Sbjct: 142 AGQMSLGQQIYDAATKRIDGIDQLREKISTAGDAKDIADLQARLQAEQAFLQTDVLRMEG 201 Query: 209 LAMIQQARADMDGQRERERRRQLVDEMKAALQ 240 L M+QQA+A +D QR+ E RQ +D M AALQ Sbjct: 202 LRMVQQAQAQIDEQRKAEDWRQRMDAMGAALQ 233