BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0080.0069.p (191 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001220568.1| Type IV secretory pathway AvhB1 protein [Bra... 274 4e-72 ref|NP_659894.1| transport secretion system IV, VirB1 protein [R... 65 5e-09 gb|EGQ61711.1| lytic transglycosylase catalytic subunit [Acidith... 64 1e-08 ref|YP_002823231.1| VirB1 type IV secretion protein [Sinorhizobi... 59 3e-07 ref|YP_665966.1| lytic transglycosylase, catalytic [Mesorhizobiu... 59 3e-07 >ref|YP_001220568.1| Type IV secretory pathway AvhB1 protein [Bradyrhizobium sp. BTAi1] gb|ABQ39896.1| Type IV secretory pathway AvhB1 protein [Bradyrhizobium sp. BTAi1] Length = 189 Score = 274 bits (701), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 139/191 (72%), Positives = 157/191 (82%), Gaps = 2/191 (1%) Query: 1 MDPAAFAALVEQCAPTPDLVRPLTAIVRQASAFEPLLITIEGRKPVPILASDRGEAIQLT 60 MDPAAF ALVEQCAPTP+LVRPL AIVRQAS+FEPLLITI+GRKP+PI A+DR EAIQLT Sbjct: 1 MDPAAFLALVEQCAPTPNLVRPLAAIVRQASSFEPLLITIQGRKPIPIQANDRDEAIQLT 60 Query: 61 TEAIATGQRVRTGLAQLDPAETRQAGLTPATTFDACQHIAGLGRLFGARLKAVSIKSSDR 120 TEAIATGQ VRTGLAQLD ET+QAGLT TTFDAC+HIAGLGRLF ARL+A ++ +S R Sbjct: 61 TEAIATGQTVRTGLAQLDAEETKQAGLTATTTFDACKHIAGLGRLFEARLQAKNVNASGR 120 Query: 121 DQAVARVVASFAARTPSQTAEPHIQPTASADTKRSTSDVSPINPPSPLVSEHPRWDVYRS 180 DQA+ARVVASFAA+ P T EP P +ADT S +D+ N P+P V E P WDVYRS Sbjct: 121 DQAIARVVASFAAKAPRTTPEPRTLPADAADT--SNADMPTSNTPAPSVRERPNWDVYRS 178 Query: 181 GRGTSAFVYDR 191 G GTSAFVY+R Sbjct: 179 GLGTSAFVYER 189 >ref|NP_659894.1| transport secretion system IV, VirB1 protein [Rhizobium etli CFN 42] gb|AAM54907.1| transport secretion system IV, VirB1 protein [Rhizobium etli CFN 42] Length = 222 Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 59/213 (27%), Positives = 91/213 (42%), Gaps = 29/213 (13%) Query: 4 AAFAALVEQCAPTPDLVRPLTAIVRQASAFEPLLITIEGRKPVPILASDRGEAIQLTTEA 63 AAF + + CAP V+ L +V S F+P I I P+ + + EAI++ T Sbjct: 3 AAFVEIAQTCAPMVQ-VQTLAGVVSLESRFQPFAIRINSGPPLAAQPASKAEAIEVATSL 61 Query: 64 IATGQRVRTGLAQLDPAETRQAGLTPATTFDACQHIAGLGRLFGARLKAVSIKSSDRDQA 123 IA Q ++ GL L ++ L+ A FD C+++ L +A ++++ D QA Sbjct: 62 IADRQDIQIGLGGLGIEHLQKLNLSVADAFDPCRNLKATATLLDGYYRA-ALRAGDPAQA 120 Query: 124 VARVVASFAAR-TPSQTA-----------EPHIQPTASADTKRSTSD-----------VS 160 ++ S+ R PS A + PT ++ T D V Sbjct: 121 ERVMLQSYYGRDDPSLGAMVKYDEQVLQEAKQLSPTLASLTIGERGDQAGSGGQPQDEVV 180 Query: 161 PINPPSPL----VSEHPRWDVYRSGRGTSAFVY 189 P P PL E P WDV+ SGR +S V+ Sbjct: 181 PALPEPPLQPSQTVEAPSWDVFSSGRQSSVLVF 213 >gb|EGQ61711.1| lytic transglycosylase catalytic subunit [Acidithiobacillus sp. GGI-221] Length = 208 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 39/94 (41%), Positives = 57/94 (60%), Gaps = 6/94 (6%) Query: 8 ALVEQCAPTPDLVRPLT--AIVRQASAFEPLLITIEGRKPVPILASDRGEAIQLTTEAIA 65 AL+++CAP V P+T AIVR S PL + + + + ++ +R +AI +A+A Sbjct: 5 ALIQRCAPQ---VAPVTMSAIVRVESGGNPLAMWNDTTRSL-VIPGNRQQAIAYLRQAMA 60 Query: 66 TGQRVRTGLAQLDPAETRQAGLTPATTFDACQHI 99 +GQRV GLAQ+D GLTPAT FDAC ++ Sbjct: 61 SGQRVDVGLAQVDTENFAAFGLTPATAFDACSNL 94 >ref|YP_002823231.1| VirB1 type IV secretion protein [Sinorhizobium fredii NGR234] gb|ACP22478.1| VirB1 type IV secretion protein [Sinorhizobium fredii NGR234] Length = 204 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 55/197 (27%), Positives = 84/197 (42%), Gaps = 15/197 (7%) Query: 4 AAFAALVEQCAPTPDLVRPLTAIVRQASAFEPLLITIEGRKPVPILASDRGEAIQLTTEA 63 A F L E+CAP L L A+V S F P I I P+ + + EAI+ T Sbjct: 3 ADFVELAEKCAPEIGL-ETLAAVVSLESGFHPFAIRINSGAPLGEQPATKAEAIEAATAL 61 Query: 64 IATGQRVRTGLAQLDPAETRQAGLTPATTFDACQHIAGLGRLFGARLKAVSIKSSDRDQA 123 +A Q V+ GL + +E + LT A FD C ++ L + +I++ Q Sbjct: 62 VAAQQDVQLGLGAIGSSELARLRLTLADAFDPCLNLKATATLLTGYYRQ-AIRAGRASQE 120 Query: 124 VARV-VASFAARTPSQTA------EPHIQPTASADTKRSTSDVSPINP----PSPLVSEH 172 RV + +F R + E + K +++D +P+ P P E Sbjct: 121 ADRVMLQAFFGRGDASVGAIVRYDEQVRREVERLSGKLTSADATPVEDAVVLPKP-ADER 179 Query: 173 PRWDVYRSGRGTSAFVY 189 P W+V+ SGR S V+ Sbjct: 180 P-WNVFASGRSVSVLVF 195 >ref|YP_665966.1| lytic transglycosylase, catalytic [Mesorhizobium sp. BNC1] gb|ABG61319.1| Lytic transglycosylase, catalytic [Chelativorans sp. BNC1] Length = 224 Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 56/218 (25%), Positives = 81/218 (37%), Gaps = 32/218 (14%) Query: 3 PAAFAALVEQCAPTPDLVRPLTAIVRQASAFEPLLITIEGRKPVPILASDRGEAIQLTTE 62 P AF L + CAP + A+V S F+P I I +P+ R EAI+ T Sbjct: 2 PVAFLDLAQNCAPQI-ATETIAAVVSVESGFQPFAIRINTDRPLAEQPKTRAEAIETATT 60 Query: 63 AIATGQRVRTGLAQLDPAETRQAGLTPATTFDACQHIAGLGRLFGARLKAVSIKSSDRDQ 122 IA G + GLA ++ + GL+ + TFD C +I L + + Q Sbjct: 61 LIAEGHDIDLGLAGINSGNLGRLGLSVSDTFDFCLNIKASASLLEHYYQIALQGGATTAQ 120 Query: 123 AVARVVAS-FAARTPSQTAEPHIQPTASADTKRSTSDVSPIN---------PPSPLVSEH 172 A A ++ S F PS A+ R ++ + I P E Sbjct: 121 AEAVMLRSYFGNGDPSVGEMVRYDKKVLAERARLSNQLDSIEIVEAKAQALPARERAGES 180 Query: 173 ---------------------PRWDVYRSGRGTSAFVY 189 PRWDVY +GR +S V+ Sbjct: 181 SAATAEGDQAEKSQQRSQASVPRWDVYNAGRQSSVLVF 218