BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0080.0063.p         (141 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_002551240.1| SNF-2-family methyltransferase [Agrobacteriu...   120   8e-26
ref|YP_001220574.1| hypothetical protein BBta_p0264 [Bradyrhizob...   115   2e-24
ref|YP_572043.1| N-6 DNA methylase [Nitrobacter hamburgensis X14...   114   5e-24
ref|YP_002290637.1| N-6 DNA methylase [Oligotropha carboxidovora...   114   6e-24
ref|NP_085860.1| DNA methylase [Mesorhizobium loti MAFF303099] >...   113   8e-24

>ref|YP_002551240.1| SNF-2-family methyltransferase [Agrobacterium radiobacter K84]
 gb|ACM30946.1| SNF-2-family methyltransferase [Agrobacterium radiobacter K84]
          Length = 1693

 Score =  120 bits (301), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 77/132 (58%), Positives = 93/132 (70%), Gaps = 5/132 (3%)

Query: 1   MAHDDPFTLDLFGNTALSSSLGLSVTAFASDFGGDDDHEDDPPPSTPASAAPAVGSARRS 60
           M+HDDPFT+DLFGNTALSS LGL VTAFASDF    + +DDP P+TPA A P     R S
Sbjct: 1   MSHDDPFTIDLFGNTALSSGLGLGVTAFASDF----EPDDDPDPTTPAPALPIAAVVRPS 56

Query: 61  ESGPRKRGDNFYLSGERGLAKGWKQRARDSIAAVRLTAQIEAEERPATVEEQRXKKKKT- 119
               R RG NF+L+ +RGLA+ WK RARD+IAA+RL A+IEA+ERPAT EEQ    + T 
Sbjct: 57  SPADRARGLNFHLADDRGLARRWKDRARDNIAAIRLAARIEADERPATREEQEMLIRFTG 116

Query: 120 TGRSRVCEGLGR 131
            G S +  G+ R
Sbjct: 117 FGASDLANGVFR 128


>ref|YP_001220574.1| hypothetical protein BBta_p0264 [Bradyrhizobium sp. BTAi1]
 gb|ABQ39902.1| hypothetical protein BBta_p0264 [Bradyrhizobium sp. BTAi1]
          Length = 1748

 Score =  115 bits (288), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/132 (60%), Positives = 97/132 (73%), Gaps = 2/132 (1%)

Query: 1   MAHDDPFTLDLFGNTALSSSLGLSVTAFASDFGGDDDHEDDPPPSTPASAAPAVGSARRS 60
           MA D PFT+DLFG+TALSS LGL VT FA+D    DDH+ DPPPS PA+  PA+ S R  
Sbjct: 50  MAQDAPFTIDLFGDTALSSGLGLGVTGFAAD-LDGDDHDGDPPPSAPAAVVPALASVRPC 108

Query: 61  ESGPRKRGDNFYLSGERGLAKGWKQRARDSIAAVRLTAQIEAEERPATVEEQRXKKKKT- 119
               R RGDNF+L+G+RGLAKGWKQRARDS+AA+RL AQIEAE+RPA+ +EQR   + T 
Sbjct: 109 APRTRTRGDNFHLAGDRGLAKGWKQRARDSVAAIRLAAQIEAEQRPASPDEQRQLMRFTG 168

Query: 120 TGRSRVCEGLGR 131
            G S +  G+ R
Sbjct: 169 FGASELANGVFR 180


>ref|YP_572043.1| N-6 DNA methylase [Nitrobacter hamburgensis X14]
 gb|ABE65211.1| N-6 DNA methylase [Nitrobacter hamburgensis X14]
          Length = 1700

 Score =  114 bits (285), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 82/138 (59%), Positives = 97/138 (70%), Gaps = 2/138 (1%)

Query: 1   MAHDDPFTLDLFGNTALSSSLGLSVTAFASDFGGDDDHEDDPPPSTPASAAPAVGSARRS 60
           MAHDDPFTLDLFGNTA+SS LGL VTAFA D   D D +DDP P+TPA A P    AR +
Sbjct: 1   MAHDDPFTLDLFGNTAVSSGLGLGVTAFAGD-TFDPDDDDDPDPATPAPAIPVAAVARSA 59

Query: 61  ESGPRKRGDNFYLSGERGLAKGWKQRARDSIAAVRLTAQIEAEERPATVEEQRXKKKKT- 119
            S  R+RG NF+L+G+R LAK WK RARD+IAAVRL A IEAEERPA++EEQ+   + T 
Sbjct: 60  PSARRERGANFHLAGDRALAKSWKDRARDNIAAVRLAAAIEAEERPASLEEQKQLIRFTG 119

Query: 120 TGRSRVCEGLGRDRGRPA 137
            G S +   + R  G  A
Sbjct: 120 FGASELANFVFRRLGEAA 137


>ref|YP_002290637.1| N-6 DNA methylase [Oligotropha carboxidovorans OM5]
 ref|YP_004634454.1| putative DNA methylase [Oligotropha carboxidovorans OM5]
 gb|ACI94772.1| N-6 DNA methylase [Oligotropha carboxidovorans OM5]
 gb|AEI04708.1| putative DNA methylase [Oligotropha carboxidovorans OM4]
 gb|AEI08337.1| putative DNA methylase [Oligotropha carboxidovorans OM5]
          Length = 1700

 Score =  114 bits (285), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 67/112 (59%), Positives = 81/112 (72%)

Query: 1   MAHDDPFTLDLFGNTALSSSLGLSVTAFASDFGGDDDHEDDPPPSTPASAAPAVGSARRS 60
           MA DDPFTLDLFGNTALSS LG  VTAFA     + D +D+P PS+PA A      AR  
Sbjct: 1   MAQDDPFTLDLFGNTALSSGLGFGVTAFAGGINAEQDDDDNPDPSSPALAPAVAAVARSG 60

Query: 61  ESGPRKRGDNFYLSGERGLAKGWKQRARDSIAAVRLTAQIEAEERPATVEEQ 112
            +  ++RG NF+L G+R LAK WK+RARD+I A+RL A I+AEERPAT+EEQ
Sbjct: 61  STAHQERGTNFHLFGDRALAKSWKERARDNITAIRLAATIQAEERPATIEEQ 112


>ref|NP_085860.1| DNA methylase [Mesorhizobium loti MAFF303099]
 dbj|BAB54701.1| DNA methylase [Mesorhizobium loti MAFF303099]
          Length = 1011

 Score =  113 bits (283), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 64/113 (56%), Positives = 76/113 (67%), Gaps = 9/113 (7%)

Query: 1   MAHDDPFTLDLFGNTALSSSLGLSVTAFASDFGGDDDHEDDPPPSTPA-SAAPAVGSARR 59
           M++DDPFTLDLFGNTALSS LGL VTAF     GD   E  P P  P    +P      +
Sbjct: 1   MSNDDPFTLDLFGNTALSSGLGLGVTAF-----GD---EPSPAPVEPEPKTSPQTAPGFQ 52

Query: 60  SESGPRKRGDNFYLSGERGLAKGWKQRARDSIAAVRLTAQIEAEERPATVEEQ 112
                  RG+NF+L  +RGLA+GWKQRARD++AA+RL A IEA +RPATVEEQ
Sbjct: 53  RVDTYAARGENFFLVSDRGLARGWKQRARDNLAAIRLAADIEAADRPATVEEQ 105