BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0080.0062.p (283 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_015657.1| methylase protein [Oligotropha carboxidovorans ... 413 e-113 ref|YP_002290637.1| N-6 DNA methylase [Oligotropha carboxidovora... 413 e-113 ref|YP_004638488.1| hypothetical protein OCA5_pHCG300880 [Oligot... 413 e-113 ref|YP_001409337.1| DEAD-like helicase [Xanthobacter autotrophic... 411 e-113 ref|YP_002551240.1| SNF-2-family methyltransferase [Agrobacteriu... 409 e-112 >ref|YP_015657.1| methylase protein [Oligotropha carboxidovorans OM5] Length = 1550 Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust. Identities = 205/264 (77%), Positives = 221/264 (83%) Query: 1 LLRLGWCGGRVLEPGIGTGMFPALMPQVLREVSHVTGVELDPVTARIARLLQPRAWIVTG 60 L RLGW GGR+LEPGIGTG+FPALMP LR+VS VTG+ELDPVTARIARLLQPRA I+ G Sbjct: 35 LQRLGWRGGRILEPGIGTGLFPALMPDGLRDVSRVTGIELDPVTARIARLLQPRARIIAG 94 Query: 61 DFARTELPARFDLVIGNPPFSDRTVRSDRALRLLGLRLHDYFIVKAIKLLKPGGLAAFVT 120 DF RTELPA FDL IGNPPFSDRTVRSDRA R LGLRLHDYFI +AI LLKPG LAAFVT Sbjct: 95 DFVRTELPASFDLAIGNPPFSDRTVRSDRAYRSLGLRLHDYFIARAIDLLKPGALAAFVT 154 Query: 121 SHGTMDKADGSARALIAKHADLLSAIRLPEGSFRADAGTNVVVDILFFRRRKHGEPEGDL 180 S GTMDKAD + R IAK ADL++AIRLPEGSFRA AGT VVVD+LFFR+ K G+ EGDL Sbjct: 155 SAGTMDKADSTMRECIAKSADLIAAIRLPEGSFRASAGTEVVVDVLFFRKHKIGDAEGDL 214 Query: 181 SWLDLDEVCPATEDEGAIRVNRWFARHRRLVLGAHALTSGPFGETYTCLPSNGEDLATTL 240 SWLDLDEV PAT+DEGAIRVNRWF +H LVLGAHAL SGPFGETYTCLP GEDLA + Sbjct: 215 SWLDLDEVRPATDDEGAIRVNRWFVKHPDLVLGAHALASGPFGETYTCLPREGEDLAAAI 274 Query: 241 DDAINLLPVAIYNGEPEAIDPDDE 264 AI LP AIY+GEPE ID D E Sbjct: 275 STAIQFLPEAIYDGEPEVIDLDLE 298 >ref|YP_002290637.1| N-6 DNA methylase [Oligotropha carboxidovorans OM5] ref|YP_004634454.1| putative DNA methylase [Oligotropha carboxidovorans OM5] gb|ACI94772.1| N-6 DNA methylase [Oligotropha carboxidovorans OM5] gb|AEI04708.1| putative DNA methylase [Oligotropha carboxidovorans OM4] gb|AEI08337.1| putative DNA methylase [Oligotropha carboxidovorans OM5] Length = 1700 Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust. Identities = 204/266 (76%), Positives = 224/266 (84%), Gaps = 2/266 (0%) Query: 1 LLRLGWCGGRVLEPGIGTGMFPALMPQVLREVSHVTGVELDPVTARIARLLQPRAWIVTG 60 L RLGW GGRVLEPGIGTG+FPALMP+ REVS+VTGVELDP TARIARLLQPRA I+TG Sbjct: 184 LRRLGWRGGRVLEPGIGTGLFPALMPEEFREVSYVTGVELDPATARIARLLQPRARIITG 243 Query: 61 DFARTELPARFDLVIGNPPFSDRTVRSDRALRLLGLRLHDYFIVKAIKLLKPGGLAAFVT 120 DFAR ELP FDL IGNPPFSDRTVRSDRA R +GLRLHDYFI +AI LLKPG LA FVT Sbjct: 244 DFARAELPRSFDLAIGNPPFSDRTVRSDRAYRSMGLRLHDYFIARAIDLLKPGALATFVT 303 Query: 121 SHGTMDKADGSARALIAKHADLLSAIRLPEGSFRADAGTNVVVDILFFRRRKHGEPEGDL 180 SHGTMDKAD +AR IAK ADL++AIRLPEGSFRA AGT+VVVD+LFFR+RK G+PEGDL Sbjct: 304 SHGTMDKADAAAREHIAKTADLIAAIRLPEGSFRAVAGTDVVVDLLFFRKRKIGDPEGDL 363 Query: 181 SWLDLDEVCPATEDEGAIRVNRWFARHRRLVLGAHALTSGPFGETYTCLPSNGEDLATTL 240 SWLDLDEV PAT+DEGAIR+NRW RH VLG H L SGPFGETYTC P +GE+L TTL Sbjct: 364 SWLDLDEVRPATQDEGAIRINRWLVRHPDFVLGTHTLASGPFGETYTCTPRDGEELETTL 423 Query: 241 DDAINLLPVAIYNGEPEAID--PDDE 264 I LLP A+Y+GEPE ID PDD+ Sbjct: 424 AARIGLLPEAVYDGEPEVIDINPDDD 449 >ref|YP_004638488.1| hypothetical protein OCA5_pHCG300880 [Oligotropha carboxidovorans OM5] gb|AEI04533.1| hypothetical protein OCA4_pHCG3B00880 [Oligotropha carboxidovorans OM4] gb|AEI08161.1| hypothetical protein OCA5_pHCG300880 [Oligotropha carboxidovorans OM5] Length = 1699 Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust. Identities = 205/264 (77%), Positives = 221/264 (83%) Query: 1 LLRLGWCGGRVLEPGIGTGMFPALMPQVLREVSHVTGVELDPVTARIARLLQPRAWIVTG 60 L RLGW GGR+LEPGIGTG+FPALMP LR+VS VTG+ELDPVTARIARLLQPRA I+ G Sbjct: 184 LQRLGWRGGRILEPGIGTGLFPALMPDGLRDVSRVTGIELDPVTARIARLLQPRARIIAG 243 Query: 61 DFARTELPARFDLVIGNPPFSDRTVRSDRALRLLGLRLHDYFIVKAIKLLKPGGLAAFVT 120 DF RTELPA FDL IGNPPFSDRTVRSDRA R LGLRLHDYFI +AI LLKPG LAAFVT Sbjct: 244 DFVRTELPASFDLAIGNPPFSDRTVRSDRAYRSLGLRLHDYFIARAIDLLKPGALAAFVT 303 Query: 121 SHGTMDKADGSARALIAKHADLLSAIRLPEGSFRADAGTNVVVDILFFRRRKHGEPEGDL 180 S GTMDKAD + R IAK ADL++AIRLPEGSFRA AGT VVVD+LFFR+ K G+ EGDL Sbjct: 304 SAGTMDKADSTMRECIAKSADLIAAIRLPEGSFRASAGTEVVVDVLFFRKHKIGDAEGDL 363 Query: 181 SWLDLDEVCPATEDEGAIRVNRWFARHRRLVLGAHALTSGPFGETYTCLPSNGEDLATTL 240 SWLDLDEV PAT+DEGAIRVNRWF +H LVLGAHAL SGPFGETYTCLP GEDLA + Sbjct: 364 SWLDLDEVRPATDDEGAIRVNRWFVKHPDLVLGAHALASGPFGETYTCLPREGEDLAAAI 423 Query: 241 DDAINLLPVAIYNGEPEAIDPDDE 264 AI LP AIY+GEPE ID D E Sbjct: 424 STAIQFLPEAIYDGEPEVIDLDLE 447 >ref|YP_001409337.1| DEAD-like helicase [Xanthobacter autotrophicus Py2] gb|ABS70101.1| DEAD-like helicase [Xanthobacter autotrophicus Py2] Length = 1417 Score = 411 bits (1056), Expect = e-113, Method: Compositional matrix adjust. Identities = 207/264 (78%), Positives = 222/264 (84%) Query: 1 LLRLGWCGGRVLEPGIGTGMFPALMPQVLREVSHVTGVELDPVTARIARLLQPRAWIVTG 60 L RLGW GGRVLEPGIGTG+FPALMP+ LR+VSHVTG+ELDPVTARI RLLQPRA I+ G Sbjct: 184 LRRLGWRGGRVLEPGIGTGLFPALMPESLRDVSHVTGIELDPVTARIVRLLQPRARIIAG 243 Query: 61 DFARTELPARFDLVIGNPPFSDRTVRSDRALRLLGLRLHDYFIVKAIKLLKPGGLAAFVT 120 DFARTELPA FDL IGNPPFSDRTVRSDRA R +GLRLHDYFIV+AI LLKPG LAAFVT Sbjct: 244 DFARTELPANFDLAIGNPPFSDRTVRSDRAYRSMGLRLHDYFIVRAIDLLKPGALAAFVT 303 Query: 121 SHGTMDKADGSARALIAKHADLLSAIRLPEGSFRADAGTNVVVDILFFRRRKHGEPEGDL 180 S GTMDKADGSAR IAK ADL+ AIRLPEGSFRA AGT+VVVD+LFFR+RK G+ EGDL Sbjct: 304 SAGTMDKADGSAREHIAKSADLVGAIRLPEGSFRASAGTDVVVDLLFFRKRKIGDAEGDL 363 Query: 181 SWLDLDEVCPATEDEGAIRVNRWFARHRRLVLGAHALTSGPFGETYTCLPSNGEDLATTL 240 +WLDLDEV PATEDEG IRVNRWFA H VLG HAL S PFGETYTCLP GEDL L Sbjct: 364 AWLDLDEVRPATEDEGPIRVNRWFATHPAFVLGTHALASRPFGETYTCLPREGEDLGAAL 423 Query: 241 DDAINLLPVAIYNGEPEAIDPDDE 264 AIN LP A+Y+GEP ID D E Sbjct: 424 PAAINRLPEAVYDGEPGIIDLDLE 447 >ref|YP_002551240.1| SNF-2-family methyltransferase [Agrobacterium radiobacter K84] gb|ACM30946.1| SNF-2-family methyltransferase [Agrobacterium radiobacter K84] Length = 1693 Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust. Identities = 203/264 (76%), Positives = 223/264 (84%) Query: 1 LLRLGWCGGRVLEPGIGTGMFPALMPQVLREVSHVTGVELDPVTARIARLLQPRAWIVTG 60 L RLGW GGRVLEPGIGTG+FPALMP+ LR++SHVTGVELDPVTA I RLLQPRA I+TG Sbjct: 180 LQRLGWRGGRVLEPGIGTGLFPALMPEALRDLSHVTGVELDPVTACIVRLLQPRARILTG 239 Query: 61 DFARTELPARFDLVIGNPPFSDRTVRSDRALRLLGLRLHDYFIVKAIKLLKPGGLAAFVT 120 DFARTELPA FDL IGNPPFSDRTVRSDRA R LGLRLHDYFI ++I LLKPG AAFVT Sbjct: 240 DFARTELPASFDLAIGNPPFSDRTVRSDRAYRSLGLRLHDYFIARSIDLLKPGAFAAFVT 299 Query: 121 SHGTMDKADGSARALIAKHADLLSAIRLPEGSFRADAGTNVVVDILFFRRRKHGEPEGDL 180 S GTMDKAD SAR IA+ ADL++AIRLPEGSFRADAGT+VVVDILFFR+RK EPEG+L Sbjct: 300 SSGTMDKADSSAREYIARTADLIAAIRLPEGSFRADAGTDVVVDILFFRKRKVAEPEGNL 359 Query: 181 SWLDLDEVCPATEDEGAIRVNRWFARHRRLVLGAHALTSGPFGETYTCLPSNGEDLATTL 240 SWLD DE+ PATEDEGAIRVNRWFA+ VLG HALT+GPFGETYTCLP + EDL L Sbjct: 360 SWLDTDEIRPATEDEGAIRVNRWFAQRPEFVLGTHALTTGPFGETYTCLPRDSEDLDAAL 419 Query: 241 DDAINLLPVAIYNGEPEAIDPDDE 264 A++LLP Y+GEP AID D E Sbjct: 420 SAAVHLLPEGRYDGEPTAIDLDLE 443