BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0080.0061.p (230 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001409337.1| DEAD-like helicase [Xanthobacter autotrophic... 379 e-103 ref|YP_001409409.1| helicase domain-containing protein [Xanthoba... 372 e-101 ref|YP_571890.1| helicase-like [Nitrobacter hamburgensis X14] >g... 372 e-101 ref|NP_053287.1| hypothetical protein pTi-SAKURA_p049 [Agrobacte... 371 e-101 ref|YP_572043.1| N-6 DNA methylase [Nitrobacter hamburgensis X14... 371 e-101 >ref|YP_001409337.1| DEAD-like helicase [Xanthobacter autotrophicus Py2] gb|ABS70101.1| DEAD-like helicase [Xanthobacter autotrophicus Py2] Length = 1417 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 190/231 (82%), Positives = 204/231 (88%), Gaps = 1/231 (0%) Query: 1 MQILSGLPVAVTVRKGRSAAGVPEKHARIIQKLIPIRDAVREVLKCQELDLPWKDAQVRL 60 MQ++ G PVAV VRKGRSA G+PEKH RI+QKLIPIRDAVREVLKCQELD PWKDAQ+ L Sbjct: 477 MQVVDGRPVAVKVRKGRSADGIPEKHVRILQKLIPIRDAVREVLKCQELDRPWKDAQICL 536 Query: 61 RIAWSNFVRAFGPINTTIVSTAEDE-TGEVRETHRRPNLQPFLDDPDCWLVASIEDDDLE 119 RIAWS+FVR FGPIN T VS EDE T EVRETHRRPNLQPFLDDPDCWLVASIED DLE Sbjct: 537 RIAWSSFVRDFGPINFTTVSMTEDEETAEVRETHRRPNLQPFLDDPDCWLVASIEDYDLE 596 Query: 120 SDTAKPGPIFTERVIAPPAPPVITSATDALAVVLNERGLVDPDHIAELVHRDADDVIAEL 179 ++TAKPGPIFT+RVI+PPA PVITSA DALAVVLNERG VD DHIAEL+HRD DDV+AEL Sbjct: 597 TNTAKPGPIFTQRVISPPAAPVITSAADALAVVLNERGRVDIDHIAELLHRDRDDVVAEL 656 Query: 180 GSAIFHDPSGGSWQTADAYLSGAVRDKLKVAEAAAALDPAYARNVTALREV 230 GSAIF DP SWQTADAYLSGAVRDKLKVAEAAAAL+P Y RNVTAL+ V Sbjct: 657 GSAIFRDPVDSSWQTADAYLSGAVRDKLKVAEAAAALEPDYERNVTALQGV 707 >ref|YP_001409409.1| helicase domain-containing protein [Xanthobacter autotrophicus Py2] gb|ABS70173.1| helicase domain protein [Xanthobacter autotrophicus Py2] Length = 1697 Score = 372 bits (955), Expect = e-101, Method: Compositional matrix adjust. Identities = 182/231 (78%), Positives = 200/231 (86%), Gaps = 1/231 (0%) Query: 1 MQILSGLPVAVTVRKGRSAAGVPEKHARIIQKLIPIRDAVREVLKCQELDLPWKDAQVRL 60 MQ++ G PVA+ VR RS G+PEKH RI++KLIPIRDAVREVLK QE D PWK AQV+L Sbjct: 475 MQLVDGTPVAIRVRNRRSPEGIPEKHVRILRKLIPIRDAVREVLKAQEFDRPWKPAQVKL 534 Query: 61 RIAWSNFVRAFGPINTTIVSTAEDE-TGEVRETHRRPNLQPFLDDPDCWLVASIEDDDLE 119 RIAWSNFVR FGPINTT+VST+EDE TGEVRETHRRPN+QPFLDDPDCWLVASIED DLE Sbjct: 535 RIAWSNFVRDFGPINTTVVSTSEDEDTGEVRETHRRPNIQPFLDDPDCWLVASIEDYDLE 594 Query: 120 SDTAKPGPIFTERVIAPPAPPVITSATDALAVVLNERGLVDPDHIAELVHRDADDVIAEL 179 S+TAKPGPIFTERVIAPP P+ITS+ DALAVVLNERG VDPDHIAEL+HRD +DV AEL Sbjct: 595 SNTAKPGPIFTERVIAPPPAPIITSSADALAVVLNERGHVDPDHIAELLHRDVEDVTAEL 654 Query: 180 GSAIFHDPSGGSWQTADAYLSGAVRDKLKVAEAAAALDPAYARNVTALREV 230 G+AIF DP GSWQ ADAYLSGAVR KL A+A AALDPAY RNVTAL+ V Sbjct: 655 GNAIFRDPGDGSWQAADAYLSGAVRSKLVTAQAVAALDPAYQRNVTALQAV 705 >ref|YP_571890.1| helicase-like [Nitrobacter hamburgensis X14] gb|ABE65058.1| helicase-like [Nitrobacter hamburgensis X14] Length = 1703 Score = 372 bits (954), Expect = e-101, Method: Compositional matrix adjust. Identities = 180/231 (77%), Positives = 199/231 (86%), Gaps = 1/231 (0%) Query: 1 MQILSGLPVAVTVRKGRSAAGVPEKHARIIQKLIPIRDAVREVLKCQELDLPWKDAQVRL 60 MQ++ G+ V +TVRKGRS G+ EKHARII+KLIPIRDAVRE+LKCQE D PWK AQVRL Sbjct: 474 MQVVDGVAVTITVRKGRSTDGIFEKHARIIRKLIPIRDAVREILKCQETDQPWKQAQVRL 533 Query: 61 RIAWSNFVRAFGPINTTIVSTAED-ETGEVRETHRRPNLQPFLDDPDCWLVASIEDDDLE 119 RIAWS+FVR FGPINTT+VS+ ED ETGEVRETHRRPNL PF DDPDCWLVASIED DLE Sbjct: 534 RIAWSSFVRNFGPINTTVVSSTEDDETGEVRETHRRPNLAPFTDDPDCWLVASIEDYDLE 593 Query: 120 SDTAKPGPIFTERVIAPPAPPVITSATDALAVVLNERGLVDPDHIAELVHRDADDVIAEL 179 +DTAKPGPIFTERVIAPP P+ITSA DALAVVLNERG VDPDH+AEL+HR++DDVIAEL Sbjct: 594 TDTAKPGPIFTERVIAPPPAPIITSAIDALAVVLNERGAVDPDHVAELLHRESDDVIAEL 653 Query: 180 GSAIFHDPSGGSWQTADAYLSGAVRDKLKVAEAAAALDPAYARNVTALREV 230 G AIF DP G+WQTADAYLSGAVR KL A+AAA LDP +ARN AL V Sbjct: 654 GDAIFRDPETGAWQTADAYLSGAVRSKLVAAQAAAKLDPIFARNAAALERV 704 >ref|NP_053287.1| hypothetical protein pTi-SAKURA_p049 [Agrobacterium tumefaciens] dbj|BAA87672.1| tiorf47 [Agrobacterium tumefaciens] Length = 1693 Score = 371 bits (952), Expect = e-101, Method: Compositional matrix adjust. Identities = 184/228 (80%), Positives = 199/228 (87%), Gaps = 1/228 (0%) Query: 1 MQILSGLPVAVTVRKGRSAAGVPEKHARIIQKLIPIRDAVREVLKCQELDLPWKDAQVRL 60 MQ++ G PVA+ VRKGR+A G+ EKH RII+KLIPIRDAVREVLK QELD PWKD QVRL Sbjct: 473 MQVIDGEPVALKVRKGRNADGILEKHVRIIRKLIPIRDAVREVLKAQELDRPWKDLQVRL 532 Query: 61 RIAWSNFVRAFGPINTTIVSTAED-ETGEVRETHRRPNLQPFLDDPDCWLVASIEDDDLE 119 R+AWS+FVR FGPIN T VS ED E+GE RE+HRRPNLQPF DDPDCWLVASIED DLE Sbjct: 533 RVAWSSFVRDFGPINHTTVSITEDPESGETRESHRRPNLQPFADDPDCWLVASIEDYDLE 592 Query: 120 SDTAKPGPIFTERVIAPPAPPVITSATDALAVVLNERGLVDPDHIAELVHRDADDVIAEL 179 +DTAKPG IFTERVI+PPAPPVITSA DALAVVLNERG VD DHIAEL+HRD DDV+AEL Sbjct: 593 NDTAKPGAIFTERVISPPAPPVITSAADALAVVLNERGRVDLDHIAELLHRDPDDVVAEL 652 Query: 180 GSAIFHDPSGGSWQTADAYLSGAVRDKLKVAEAAAALDPAYARNVTAL 227 GSAIF DP+ GSWQ ADAYLSG VRDKLKVAEAAAALDP Y RNVTAL Sbjct: 653 GSAIFRDPADGSWQMADAYLSGPVRDKLKVAEAAAALDPVYNRNVTAL 700 >ref|YP_572043.1| N-6 DNA methylase [Nitrobacter hamburgensis X14] gb|ABE65211.1| N-6 DNA methylase [Nitrobacter hamburgensis X14] Length = 1700 Score = 371 bits (952), Expect = e-101, Method: Compositional matrix adjust. Identities = 189/231 (81%), Positives = 203/231 (87%), Gaps = 1/231 (0%) Query: 1 MQILSGLPVAVTVRKGRSAAGVPEKHARIIQKLIPIRDAVREVLKCQELDLPWKDAQVRL 60 MQ+L G PVAV VR GRSA G+PEKH RII+KLIPIRDAVR VLK QELD PWK+AQVRL Sbjct: 476 MQVLDGQPVAVKVRNGRSADGIPEKHVRIIKKLIPIRDAVRGVLKAQELDRPWKEAQVRL 535 Query: 61 RIAWSNFVRAFGPINTTIVSTAEDE-TGEVRETHRRPNLQPFLDDPDCWLVASIEDDDLE 119 RIAWSNFVR FGPIN T VST EDE TGEVRETHRRPN+Q FLDDPDCWLVASIED DLE Sbjct: 536 RIAWSNFVRDFGPINFTTVSTTEDEETGEVRETHRRPNIQSFLDDPDCWLVASIEDYDLE 595 Query: 120 SDTAKPGPIFTERVIAPPAPPVITSATDALAVVLNERGLVDPDHIAELVHRDADDVIAEL 179 ++TAKPGPIFT+RVI+PPAPPVITSA DALAVVLNER VD DHIAEL+HRD DVIAEL Sbjct: 596 TNTAKPGPIFTKRVISPPAPPVITSAADALAVVLNERARVDVDHIAELLHRDGQDVIAEL 655 Query: 180 GSAIFHDPSGGSWQTADAYLSGAVRDKLKVAEAAAALDPAYARNVTALREV 230 GSAIF DP+ GSWQTADAYLSG VRDKL+ AEAAAALDP+Y RNVTAL+ V Sbjct: 656 GSAIFRDPADGSWQTADAYLSGHVRDKLRAAEAAAALDPSYQRNVTALQGV 706