BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0080.0047.p (310 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_002290616.1| hypothetical protein OCAR_7653 [Oligotropha ... 358 4e-97 ref|YP_003068133.1| hypothetical protein METDI2601 [Methylobacte... 352 6e-95 ref|YP_001220594.1| hypothetical protein BBta_p0290 [Bradyrhizob... 338 6e-91 ref|YP_571918.1| hypothetical protein Nham_4505 [Nitrobacter ham... 334 1e-89 ref|YP_003068129.1| hypothetical protein METDI2596 [Methylobacte... 314 9e-84 >ref|YP_002290616.1| hypothetical protein OCAR_7653 [Oligotropha carboxidovorans OM5] ref|YP_004634475.1| hypothetical protein OCA5_pOC16701620 [Oligotropha carboxidovorans OM5] gb|ACI94751.1| conserved hypothetical protein [Oligotropha carboxidovorans OM5] gb|AEI04729.1| hypothetical protein OCA4_pOC167B01620 [Oligotropha carboxidovorans OM4] gb|AEI08358.1| hypothetical protein OCA5_pOC16701620 [Oligotropha carboxidovorans OM5] Length = 398 Score = 358 bits (920), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 223/318 (70%), Positives = 247/318 (77%), Gaps = 11/318 (3%) Query: 1 VLHDAGMDVRAPTHELTRAHAVLRARRRIAEAKPEWALSAPGLSSLRGRGEREQETSNRK 60 VLHDAGMD+R PTHELTRAH VLRARRRIAEAK +WALSA GL+ LRGRGER +E R Sbjct: 84 VLHDAGMDIRTPTHELTRAHTVLRARRRIAEAKADWALSAAGLAGLRGRGERSREDGARD 143 Query: 61 EGEGGFEIDEASEREEVGLELPLG----VLEADPHLAAAFDAVDAANARAERRLADET-- 114 E + DEA E+ + G V D LA F AVDAA A+A+R LA E Sbjct: 144 RDE---DEDEARGPEDEDGDADTGEAFRVAPTDDRLADVFAAVDAAIAQADRTLAGENNG 200 Query: 115 --RIRPERDSLIYDPDWDEEERLDHWRDVVDQTRGLPPTLAGAIAADAWGEIEPLEHTPW 172 + RPERD L+YD DWDE+ERLD WR VVDQTR LPPTLA AIAADAW IEPL+HTPW Sbjct: 201 RRQPRPERDPLVYDLDWDEDERLDSWRTVVDQTRNLPPTLASAIAADAWAAIEPLQHTPW 260 Query: 173 LGRLLAAALLRDRGKTRSHLPCLHAGLKSIPRERRRPRDAAARLVVQLEAMTAAAESGRK 232 LGRLL A+LLR+RGK R HLPCL+ GLK+IPRERRRP D A RL VQLEA+ AAA +G K Sbjct: 261 LGRLLGASLLRERGKARMHLPCLNEGLKAIPRERRRPADRAGRLAVQLEAIAAAAAAGLK 320 Query: 233 DHDRWLMTRNLLARKLAGRRATSKLPALLDYVLTRPIVSAGMIAAELGITPRAAQNLVAE 292 DHDRWL R LLARKL GRR+TS+LPALLDYVLTRPIVSAGMIA EL +TPRAAQ++VAE Sbjct: 321 DHDRWLTARTLLARKLDGRRSTSRLPALLDYVLTRPIVSAGMIAEELKVTPRAAQDMVAE 380 Query: 293 LGLREATGRGRYRAWGVL 310 LGLREATGRGRYRAWGVL Sbjct: 381 LGLREATGRGRYRAWGVL 398 >ref|YP_003068133.1| hypothetical protein METDI2601 [Methylobacterium extorquens DM4] emb|CAX24253.1| conserved hypothetical protein, DUF1612 family protein [Methylobacterium extorquens DM4] Length = 308 Score = 352 bits (902), Expect = 6e-95, Method: Compositional matrix adjust. Identities = 223/310 (71%), Positives = 245/310 (79%), Gaps = 8/310 (2%) Query: 7 MDVRAPTHELTRAHAVLRARRRIAEAKPEWALSAPGLSSLRGRG---EREQETSNRKEGE 63 MDVRAPTHELTRAHAVLRARRRIAEAKP WALSA GL+ LRGRG +E+ET NR E E Sbjct: 1 MDVRAPTHELTRAHAVLRARRRIAEAKPGWALSAAGLAGLRGRGGRGHQEEETCNRNEDE 60 Query: 64 G-GFEIDEASEREEVGLELPLGVLEADPHLAAAFDAVDAANARAERRLADETRIR--PER 120 G E+D E P V D +A F VDAA A+A+R LA + R PER Sbjct: 61 GESSEMDHGDG--EADATEPFRVAPLDDRMADIFATVDAAIAQADRTLAGDIASRRPPER 118 Query: 121 DSLIYDPDWDEEERLDHWRDVVDQTRGLPPTLAGAIAADAWGEIEPLEHTPWLGRLLAAA 180 DSL+YD DWDE+ERLD WRDVVDQTR LPP LA AIAADAW +EPL+HTPW+GRLLAA+ Sbjct: 119 DSLVYDLDWDEDERLDAWRDVVDQTRILPPALAAAIAADAWSALEPLQHTPWIGRLLAAS 178 Query: 181 LLRDRGKTRSHLPCLHAGLKSIPRERRRPRDAAARLVVQLEAMTAAAESGRKDHDRWLMT 240 +LR RGKTR HL CLH GLK+IPRERRRPRD+A RL V+LEA TAAAE+G KDHDRWL Sbjct: 179 VLRQRGKTRWHLSCLHDGLKAIPRERRRPRDSAGRLAVELEATTAAAEAGLKDHDRWLTA 238 Query: 241 RNLLARKLAGRRATSKLPALLDYVLTRPIVSAGMIAAELGITPRAAQNLVAELGLREATG 300 R LLARKL GRR+TS+LPALLDYVLTRPIVSA MIA EL ITPRAAQ+LVAELGLREATG Sbjct: 239 RTLLARKLDGRRSTSRLPALLDYVLTRPIVSASMIAEELRITPRAAQDLVAELGLREATG 298 Query: 301 RGRYRAWGVL 310 RGRYRAWGVL Sbjct: 299 RGRYRAWGVL 308 >ref|YP_001220594.1| hypothetical protein BBta_p0290 [Bradyrhizobium sp. BTAi1] gb|ABQ39922.1| hypothetical protein BBta_p0290 [Bradyrhizobium sp. BTAi1] Length = 358 Score = 338 bits (867), Expect = 6e-91, Method: Compositional matrix adjust. Identities = 224/317 (70%), Positives = 247/317 (77%), Gaps = 8/317 (2%) Query: 1 VLHDAGMDVRAPTHELTRAHAVLRARRRIAEAKPEWALSAPGLSSLR---GRGEREQETS 57 VLHDAGMDVRAPTHELT AHAVLRARRRIA+AKP+WALSA GL+ LR GRG +E+E Sbjct: 43 VLHDAGMDVRAPTHELTHAHAVLRARRRIADAKPDWALSAAGLAGLRARGGRGHQEEEAC 102 Query: 58 NRKEGEGGFEIDEASEREEVGLELPLGVLEADPHLAAAFDAVDAANARAERRLADETR-- 115 +R E E F + E E P D L F AVDAA A+A+R LA ET Sbjct: 103 DRNEEESEFPDMDDGHGEADATE-PFRAPPTDQRLVDVFAAVDAAIAQADRTLASETNDR 161 Query: 116 --IRPERDSLIYDPDWDEEERLDHWRDVVDQTRGLPPTLAGAIAADAWGEIEPLEHTPWL 173 RPERD L+YD DWDE+ERLD WR VVDQTR LPP LA AIAADAW +EPL+H+PWL Sbjct: 162 RLKRPERDPLVYDLDWDEDERLDAWRAVVDQTRNLPPALAAAIAADAWHALEPLQHSPWL 221 Query: 174 GRLLAAALLRDRGKTRSHLPCLHAGLKSIPRERRRPRDAAARLVVQLEAMTAAAESGRKD 233 GRLLAAALLR RGK RSHLPCLH GLK+IPRERRRPRDAA+RL VQL A+ AAAE+G KD Sbjct: 222 GRLLAAALLRARGKARSHLPCLHDGLKAIPRERRRPRDAASRLAVQLGAIAAAAEAGLKD 281 Query: 234 HDRWLMTRNLLARKLAGRRATSKLPALLDYVLTRPIVSAGMIAAELGITPRAAQNLVAEL 293 HDRWL R LLARKL GRR+TS+LPALLDYVLTRP+VSAGMIA EL ITPR AQ+LVA L Sbjct: 282 HDRWLTARTLLARKLRGRRSTSRLPALLDYVLTRPVVSAGMIAEELKITPRGAQDLVAAL 341 Query: 294 GLREATGRGRYRAWGVL 310 GLREATGRGRYRAWG+L Sbjct: 342 GLREATGRGRYRAWGIL 358 >ref|YP_571918.1| hypothetical protein Nham_4505 [Nitrobacter hamburgensis X14] gb|ABE65086.1| protein of unknown function DUF1612 [Nitrobacter hamburgensis X14] Length = 404 Score = 334 bits (856), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 219/326 (67%), Positives = 245/326 (75%), Gaps = 27/326 (8%) Query: 1 VLHDAGMDVRAPTHELTRAHAVLRARRRIAEAKPEWALSAPGLSSLR------------G 48 VLHDAGMDVRAPT ELTRAHAVLR RRRIAEAKP+WALSA GL+ L G Sbjct: 90 VLHDAGMDVRAPTFELTRAHAVLRTRRRIAEAKPDWALSAAGLAGLLGRGGQCDREDGSG 149 Query: 49 RGEREQETSNRKEGEGGFEIDEASEREEVGLELPLGVLEADPHLAAAFDAVDAANARAER 108 GE E + + +G+G E E PL + D LA F AVDAA A+A+R Sbjct: 150 DGEEEGDDALDMDGDGAAETAE-----------PLRLTPPDDQLADVFAAVDAAIAQADR 198 Query: 109 RLA----DETRIRPERDSLIYDPDWDEEERLDHWRDVVDQTRGLPPTLAGAIAADAWGEI 164 LA + R PER L+YD DWDEEERLD WR V+DQTR LPPTLA AIAADAW I Sbjct: 199 TLAGDIATQARRPPERHPLVYDLDWDEEERLDAWRAVIDQTRTLPPTLAAAIAADAWSAI 258 Query: 165 EPLEHTPWLGRLLAAALLRDRGKTRSHLPCLHAGLKSIPRERRRPRDAAARLVVQLEAMT 224 EPL+HTPW+GRLLAA++LR RGKTRSHL CLH GLK+IPRERRRPRD+A RL V LEA+ Sbjct: 259 EPLQHTPWIGRLLAASVLRQRGKTRSHLACLHDGLKAIPRERRRPRDSAGRLAVGLEAIA 318 Query: 225 AAAESGRKDHDRWLMTRNLLARKLAGRRATSKLPALLDYVLTRPIVSAGMIAAELGITPR 284 AAA +G K+HDRWLM R LL RKL GRR+TS+LPALL+YVLTRPIVSAGMIAAEL ITPR Sbjct: 319 AAAAAGLKEHDRWLMARTLLTRKLDGRRSTSRLPALLEYVLTRPIVSAGMIAAELKITPR 378 Query: 285 AAQNLVAELGLREATGRGRYRAWGVL 310 AAQ+LVAELGLREATGRGRYRAWG+L Sbjct: 379 AAQDLVAELGLREATGRGRYRAWGIL 404 >ref|YP_003068129.1| hypothetical protein METDI2596 [Methylobacterium extorquens DM4] emb|CAX24249.1| conserved hypothetical protein, DUF1612 family protein [Methylobacterium extorquens DM4] Length = 373 Score = 314 bits (805), Expect = 9e-84, Method: Compositional matrix adjust. Identities = 194/314 (61%), Positives = 228/314 (72%), Gaps = 14/314 (4%) Query: 1 VLHDAGMDVRAPTHELTRAHAVLRARRRIAEAKPEWALSAPGLSSLRGR-GEREQETSNR 59 VLHDAGMDVRAPTHEL RAH +LRARRRIA A P WALS GL +LRGR GE + Sbjct: 70 VLHDAGMDVRAPTHELARAHTLLRARRRIAGAAPGWALSPAGLEALRGRAGEADATHPEV 129 Query: 60 KEGEGGFEIDEASEREEVGLELPLGVLEADPHLAAAFDAVDAANARAERRLADETRI--- 116 ++ E + DEAS+R ++ D + F +VDAA A A+R LA E Sbjct: 130 EDPEPVEDEDEASDRS----------IDDDEAFSELFASVDAAIAEADRTLAGERHPAAP 179 Query: 117 RPERDSLIYDPDWDEEERLDHWRDVVDQTRGLPPTLAGAIAADAWGEIEPLEHTPWLGRL 176 ERD L+YD DWDE+ RL WR +VDQTR LPPTLA A+ +AW IEPL+ P LGRL Sbjct: 180 SGERDPLVYDLDWDEDARLTEWRAIVDQTRDLPPTLAAALVHEAWSTIEPLQRAPGLGRL 239 Query: 177 LAAALLRDRGKTRSHLPCLHAGLKSIPRERRRPRDAAARLVVQLEAMTAAAESGRKDHDR 236 L ALL+DRGK+R+HLPCL G K++PRERRR RDAA RLV +LEA+ AAAE G K HDR Sbjct: 240 LTGALLQDRGKSRAHLPCLAEGAKAVPRERRRSRDAATRLVAELEAIAAAAEEGLKQHDR 299 Query: 237 WLMTRNLLARKLAGRRATSKLPALLDYVLTRPIVSAGMIAAELGITPRAAQNLVAELGLR 296 WL+ R LL RKL GRR+TS+LP L++ V++RP+VSAGMIA EL ITPR+AQNLVAELGLR Sbjct: 300 WLLARTLLLRKLDGRRSTSRLPELIELVISRPLVSAGMIAKELDITPRSAQNLVAELGLR 359 Query: 297 EATGRGRYRAWGVL 310 EATGRGRYRAWGVL Sbjct: 360 EATGRGRYRAWGVL 373