BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0080.0046.p         (129 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001220595.1| hypothetical protein BBta_p0291 [Bradyrhizob...   129   1e-28
ref|YP_003065708.1| hypothetical protein p1METDI0100 [Methylobac...    87   1e-15
ref|YP_001754549.1| PilT domain-containing protein [Methylobacte...    85   3e-15
ref|YP_001831004.1| PilT domain-containing protein [Beijerinckia...    81   6e-14
ref|YP_002546176.1| hypothetical protein Arad_4556 [Agrobacteriu...    67   7e-10

>ref|YP_001220595.1| hypothetical protein BBta_p0291 [Bradyrhizobium sp. BTAi1]
 gb|ABQ39923.1| hypothetical protein BBta_p0291 [Bradyrhizobium sp. BTAi1]
          Length = 131

 Score =  129 bits (324), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/131 (58%), Positives = 89/131 (67%), Gaps = 2/131 (1%)

Query: 1   MFIDASALTAMLTHEDEARELLARVQQSTARLTFRWPSGRRRLPSARELDLPIAAAAEAV 60
           MFIDASALTA+LT E+EARELLAR+QQ+  RLT         +  AR L L ++AAAEAV
Sbjct: 1   MFIDASALTALLTDENEARELLARLQQTGTRLTSPLAVWEAAVAVARVLKLSVSAAAEAV 60

Query: 61  ESYLARIEIKMVNVALETARA--RRLRPLRQGPTPGAAQFRGLFAYACARYLGEPLMFKG 118
           E YLA +EI +V V  ETAR          +G  P +  F   FAYACAR+LG+PLMFKG
Sbjct: 61  EDYLALMEIAVVAVPPETARIALDAFDRFGKGRHPASLNFGDCFAYACARHLGQPLMFKG 120

Query: 119 ADFPQTDIEAA 129
            DFPQTDIEAA
Sbjct: 121 GDFPQTDIEAA 131


>ref|YP_003065708.1| hypothetical protein p1METDI0100 [Methylobacterium extorquens DM4]
 emb|CAX17089.1| Conserved protein of unknown function [Methylobacterium extorquens
           DM4]
          Length = 132

 Score = 86.7 bits (213), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/131 (43%), Positives = 72/131 (54%), Gaps = 2/131 (1%)

Query: 1   MFIDASALTAMLTHEDEARELLARVQQSTARLTFRWPSGRRRLPSARELDLPIAAAAEAV 60
           MF+DASALTA+L  E +A  L+AR+QQ+  RL+         +  AR LDL +  A +AV
Sbjct: 2   MFVDASALTAILAGEPDAPALVARLQQARQRLSSPLAVWETTIALARILDLTLPEAQQAV 61

Query: 61  ESYLARIEIKMVNVALETARA--RRLRPLRQGPTPGAAQFRGLFAYACARYLGEPLMFKG 118
             YLA   I++V V+ + A           QG  P    F   FAYACAR    PL+FKG
Sbjct: 62  RDYLALASIQVVAVSPKAADGAIEAFDRFGQGRHPAGLNFGDCFAYACARSYRMPLLFKG 121

Query: 119 ADFPQTDIEAA 129
            DF  TDI AA
Sbjct: 122 NDFALTDISAA 132


>ref|YP_001754549.1| PilT domain-containing protein [Methylobacterium radiotolerans JCM
           2831]
 gb|ACB23866.1| PilT protein domain protein [Methylobacterium radiotolerans JCM
           2831]
          Length = 131

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/131 (46%), Positives = 74/131 (56%), Gaps = 2/131 (1%)

Query: 1   MFIDASALTAMLTHEDEARELLARVQQSTARLTFRWPSGRRRLPSARELDLPIAAAAEAV 60
           MF+DASALTA+LT E +A  L AR+Q++  R+T         +  AR LDLP+ AA EAV
Sbjct: 1   MFVDASALTAILTDETDAAALAARLQRALRRVTSPLAVWETGVAVARHLDLPVPAAREAV 60

Query: 61  ESYL--ARIEIKMVNVALETARARRLRPLRQGPTPGAAQFRGLFAYACARYLGEPLMFKG 118
            +YL  A IEI  V    E           +G  P    F   FAYACAR  G PL++KG
Sbjct: 61  HAYLDLAGIEILAVPPEAEAGALDAYDRFGKGRHPAGLNFGDCFAYACARAHGVPLLYKG 120

Query: 119 ADFPQTDIEAA 129
            DFP TDIE A
Sbjct: 121 NDFPLTDIETA 131


>ref|YP_001831004.1| PilT domain-containing protein [Beijerinckia indica subsp. indica
           ATCC 9039]
 gb|ACB97260.1| PilT protein domain protein [Beijerinckia indica subsp. indica ATCC
           9039]
          Length = 132

 Score = 80.9 bits (198), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 53/134 (39%), Positives = 72/134 (53%), Gaps = 11/134 (8%)

Query: 1   MFIDASALTAMLTHEDEARELLARVQQSTARLTFRWPSGRRRLPSARELDLPIAAAAEAV 60
           MF+DASAL AMLT+ED+A +L  R+ Q++ RLT            AR LDLP   A EAV
Sbjct: 1   MFVDASALVAMLTNEDDAADLAQRLSQTSKRLTTPIAIFETAAAVARVLDLPFDEAREAV 60

Query: 61  ESYLARIEIKMV-------NVALETARARRLRPLRQGPTPGAAQFRGLFAYACARYLGEP 113
           E++L  + ++++        +ALE       R  +    P        F+YACARY   P
Sbjct: 61  ETFLQLLNVQVLALPPRASTLALEAFE----RYGKGRGHPAQLNMGACFSYACARYYRMP 116

Query: 114 LMFKGADFPQTDIE 127
           L++K  D  QTDIE
Sbjct: 117 LLYKCDDLRQTDIE 130


>ref|YP_002546176.1| hypothetical protein Arad_4556 [Agrobacterium radiobacter K84]
 gb|ACM28243.1| conserved hypothetical protein [Agrobacterium radiobacter K84]
          Length = 131

 Score = 67.4 bits (163), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 48/136 (35%), Positives = 70/136 (51%), Gaps = 12/136 (8%)

Query: 1   MFIDASALTAMLTHEDEARELLARVQQSTARLTFRWPSGRRRLPSARELDLPIAAAAEAV 60
           M ID S LTAM+T E+EAR    R+Q +TAR+T    + +  +  A  L L    A +AV
Sbjct: 1   MLIDTSVLTAMMTDEEEARCFAIRMQTATARMTTPMAAAQAAIDIAARLGLTAVEAGDAV 60

Query: 61  ESYLARIEIKMVNV-------ALETARARRLRPLRQGPTPGAAQFRGLFAYACARYLGEP 113
           +++L  + I+++ +       A+E A  R      +G    A        YACARY  +P
Sbjct: 61  QTFLQLMNIQLLAIPPRAAFLAVE-AHDR----FGEGRHSTALSLNDCMTYACARYYRQP 115

Query: 114 LMFKGADFPQTDIEAA 129
           L+ K   F +TDIE A
Sbjct: 116 LLSKSNQFSRTDIEVA 131