BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0080.0044.p (408 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_571718.1| cobyrinic acid a,c-diamide synthase [Nitrobacte... 680 0.0 ref|YP_002542549.1| replication protein A [Agrobacterium vitis S... 584 e-165 ref|YP_001220033.1| cobyrinic acid a,c-diamide synthase [Acidiph... 578 e-163 gb|EGP54174.1| replication protein RepA [Agrobacterium tumefacie... 575 e-162 ref|YP_770902.1| replication protein RepA [Rhizobium leguminosar... 572 e-161 >ref|YP_571718.1| cobyrinic acid a,c-diamide synthase [Nitrobacter hamburgensis X14] gb|ABE64886.1| Cobyrinic acid a,c-diamide synthase [Nitrobacter hamburgensis X14] Length = 407 Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust. Identities = 325/390 (83%), Positives = 348/390 (89%) Query: 19 AIHELIAADARELSAKLVAHRLKLFPPKAAKTLRRFSSGEAAKLIGVNDSYLRQLSLEKK 78 AIHELIAADARELSAKL AHRLKLFPPKA K LR FSSGEAAKLIGVND YLRQLSLE K Sbjct: 18 AIHELIAADARELSAKLQAHRLKLFPPKARKKLRPFSSGEAAKLIGVNDGYLRQLSLEGK 77 Query: 79 GPDPEIGPAGRRLYSLSDIQALRTYLDETGKASRRYLPTRREGEHLQVIAVVNFKGGSGK 138 GP PE +GRR Y+ DIQALRTYLDETGK++RRY P R EGEHLQVIAVVNFKGGSGK Sbjct: 78 GPQPETSSSGRRSYTFDDIQALRTYLDETGKSTRRYRPWRAEGEHLQVIAVVNFKGGSGK 137 Query: 139 TTSAAHLAQHLALQGYRVLAVDLDPQASLSALHGYQPEFDVEENGTLYGAIRYDDSRREL 198 TT+AAHLAQHL LQGYRVLAVDLDPQASLSALHGYQPEFD+EENGTLYGAIRYDD+RR+L Sbjct: 138 TTTAAHLAQHLTLQGYRVLAVDLDPQASLSALHGYQPEFDIEENGTLYGAIRYDDARRDL 197 Query: 199 SDIIRRTYFPLLDIVPANIELMEFEHETPKALAQRQSGDPLFFARVATVLGSVEANYDAV 258 DIIR TYF LDI+P NIELMEFEHETPKALA RQ+GDPLFF+RVA L +VE YD V Sbjct: 198 CDIIRPTYFSGLDIIPGNIELMEFEHETPKALASRQTGDPLFFSRVARALATVEDKYDVV 257 Query: 259 VIDCPPQLGFLTLSALCAATAVLIPVHPQMLDVMSMSQFLLMTSDLLEVVAKAGGNMNYD 318 VIDCPPQLGFLTLSALCAATA+LIPVHPQMLDVMSM QFL+MTSDL+ VVAKAGGN NYD Sbjct: 258 VIDCPPQLGFLTLSALCAATALLIPVHPQMLDVMSMCQFLIMTSDLMAVVAKAGGNTNYD 317 Query: 319 WMRYLVTRYEPGDGPQAQMVGFMRSLFGDRMITNMMLKSTAISDAGITKQTLYEVPREQF 378 WMRYLVTRYEP DGPQ QMV FMRSLF DR++TNM+LKSTAISDAGITKQTLYEV R+QF Sbjct: 318 WMRYLVTRYEPSDGPQTQMVSFMRSLFSDRVLTNMVLKSTAISDAGITKQTLYEVERQQF 377 Query: 379 TRSTYDRAMESLDGVNGEIQNLMQAAWGRA 408 TR+TYDRA+ESLD VNGEI+ L+Q AW R Sbjct: 378 TRATYDRAIESLDSVNGEIEKLIQEAWRRG 407 >ref|YP_002542549.1| replication protein A [Agrobacterium vitis S4] gb|ACM39364.1| replication protein A [Agrobacterium vitis S4] Length = 399 Score = 584 bits (1506), Expect = e-165, Method: Compositional matrix adjust. Identities = 275/391 (70%), Positives = 322/391 (82%), Gaps = 1/391 (0%) Query: 18 RAIHELIAADARELSAKLVAHRLKLFPPKAAKTLRRFSSGEAAKLIGVNDSYLRQLSLEK 77 +AIH+LI A AR+LS L HR+KL+PP+A KTLR FSS EAAKLIGVND YLR LS+E Sbjct: 9 KAIHKLIGAHARDLSGALHEHRVKLYPPEARKTLRSFSSTEAAKLIGVNDGYLRHLSIEG 68 Query: 78 KGPDPEIGPAGRRLYSLSDIQALRTYLDETGKASRRYLPTRREGEHLQVIAVVNFKGGSG 137 KGP PEIG RR Y++ IQALR YLD+ GK RRY P R EHLQVI VVNFKGGSG Sbjct: 69 KGPQPEIGNNNRRSYTIETIQALREYLDQNGKNDRRYSPKRSGKEHLQVITVVNFKGGSG 128 Query: 138 KTTSAAHLAQHLALQGYRVLAVDLDPQASLSALHGYQPEFDVEENGTLYGAIRYDDSRRE 197 KTT+AAHLAQ+LAL GYRVLA+DLDPQAS+SALHG+QPEFDV++N TLYGA+RYD+ RR Sbjct: 129 KTTTAAHLAQYLALNGYRVLAIDLDPQASMSALHGFQPEFDVKDNETLYGAMRYDEERRP 188 Query: 198 LSDIIRRTYFPLLDIVPANIELMEFEHETPKALAQRQSGDPLFFARVATVLGSVEANYDA 257 L D+I++TYF LD+VP N+ELMEFEH+T K L + +FF R+ + SV +YD Sbjct: 189 LKDVIKKTYFTNLDLVPGNLELMEFEHDTAKVLGSNDRKN-IFFTRMDEAIASVADSYDV 247 Query: 258 VVIDCPPQLGFLTLSALCAATAVLIPVHPQMLDVMSMSQFLLMTSDLLEVVAKAGGNMNY 317 VV+DCPPQLGFLT+SALCAATAVL+ VHPQMLDVMSM QFLLMTS+LL VVA AGG+MNY Sbjct: 248 VVVDCPPQLGFLTISALCAATAVLVTVHPQMLDVMSMCQFLLMTSELLSVVADAGGSMNY 307 Query: 318 DWMRYLVTRYEPGDGPQAQMVGFMRSLFGDRMITNMMLKSTAISDAGITKQTLYEVPREQ 377 DWMRYLVTRYEPGDGPQ QMV FMR++FGD ++ + MLKSTAISDAGITKQTLYEV R+Q Sbjct: 308 DWMRYLVTRYEPGDGPQNQMVSFMRTMFGDHVLNHPMLKSTAISDAGITKQTLYEVSRDQ 367 Query: 378 FTRSTYDRAMESLDGVNGEIQNLMQAAWGRA 408 FTR+TYDRAME+L+ VN EI+ L+ AWGR+ Sbjct: 368 FTRATYDRAMEALENVNSEIEQLVHKAWGRS 398 >ref|YP_001220033.1| cobyrinic acid a,c-diamide synthase [Acidiphilium cryptum JF-5] gb|ABQ28891.1| Cobyrinic acid a,c-diamide synthase [Acidiphilium cryptum JF-5] Length = 410 Score = 578 bits (1489), Expect = e-163, Method: Compositional matrix adjust. Identities = 267/386 (69%), Positives = 324/386 (83%) Query: 20 IHELIAADARELSAKLVAHRLKLFPPKAAKTLRRFSSGEAAKLIGVNDSYLRQLSLEKKG 79 +H+LIA DA LS KL HRLKLFPPKA KTLRRF+S E AK++GV DSYLRQLS+E KG Sbjct: 23 LHDLIAGDATGLSEKLQEHRLKLFPPKAQKTLRRFTSTETAKIVGVADSYLRQLSIEHKG 82 Query: 80 PDPEIGPAGRRLYSLSDIQALRTYLDETGKASRRYLPTRREGEHLQVIAVVNFKGGSGKT 139 P P+ GRR YS +DI+ALR +LDE+GK RRYLP RR +HLQ+I V NFKGGS KT Sbjct: 83 PTPQTTAHGRRSYSFADIRALREFLDESGKGDRRYLPHRRPDQHLQIICVANFKGGSAKT 142 Query: 140 TSAAHLAQHLALQGYRVLAVDLDPQASLSALHGYQPEFDVEENGTLYGAIRYDDSRRELS 199 T++A+LAQ+LAL+GYRVLAVDLDPQASL+ALHG QPEFD+ + TLYGAI+Y + RR + Sbjct: 143 TTSANLAQYLALRGYRVLAVDLDPQASLTALHGLQPEFDLGPDETLYGAIKYGEGRRRTA 202 Query: 200 DIIRRTYFPLLDIVPANIELMEFEHETPKALAQRQSGDPLFFARVATVLGSVEANYDAVV 259 +++R TYFP LD++P NIELMEFEHE+P A+A++++G +FF+RV+ L V YD V+ Sbjct: 203 EVVRETYFPGLDLIPGNIELMEFEHESPIAMAEKRAGATMFFSRVSQALAEVADRYDVVI 262 Query: 260 IDCPPQLGFLTLSALCAATAVLIPVHPQMLDVMSMSQFLLMTSDLLEVVAKAGGNMNYDW 319 +DCPPQLGFLTLSALCA+TA+L+ VHP+MLD+MSM QFLLMTS+LL VVAKAGG+M YDW Sbjct: 263 LDCPPQLGFLTLSALCASTALLVTVHPEMLDIMSMCQFLLMTSELLGVVAKAGGDMQYDW 322 Query: 320 MRYLVTRYEPGDGPQAQMVGFMRSLFGDRMITNMMLKSTAISDAGITKQTLYEVPREQFT 379 MRYLVTRYEP DGPQ QMV FMRSLFG+R++TN M+KSTAISDA ITKQTLYEVPREQFT Sbjct: 323 MRYLVTRYEPTDGPQTQMVAFMRSLFGERVLTNAMVKSTAISDASITKQTLYEVPREQFT 382 Query: 380 RSTYDRAMESLDGVNGEIQNLMQAAW 405 RSTYDRA+ES++ VN EI+ L++ AW Sbjct: 383 RSTYDRALESMNQVNAEIEALVEKAW 408 >gb|EGP54174.1| replication protein RepA [Agrobacterium tumefaciens F2] Length = 398 Score = 575 bits (1482), Expect = e-162, Method: Compositional matrix adjust. Identities = 277/390 (71%), Positives = 325/390 (83%), Gaps = 1/390 (0%) Query: 18 RAIHELIAADARELSAKLVAHRLKLFPPKAAKTLRRFSSGEAAKLIGVNDSYLRQLSLEK 77 +AIH+LIAA AR+LS L HR+KL+PP+A KTLR FSS EAAKLIGVND YLR LS+E Sbjct: 9 KAIHKLIAAHARDLSGALHEHRIKLYPPEARKTLRSFSSTEAAKLIGVNDGYLRHLSIEG 68 Query: 78 KGPDPEIGPAGRRLYSLSDIQALRTYLDETGKASRRYLPTRREGEHLQVIAVVNFKGGSG 137 KGP PEIG RR YS+ IQALR YLDE GK RRY P R EHLQVI VNFKGGSG Sbjct: 69 KGPQPEIGNNNRRSYSVDTIQALREYLDENGKGDRRYSPRRSGSEHLQVITAVNFKGGSG 128 Query: 138 KTTSAAHLAQHLALQGYRVLAVDLDPQASLSALHGYQPEFDVEENGTLYGAIRYDDSRRE 197 KTT+AAHLAQ+LAL GYRVLA+DLDPQAS+SALHG+QPEFDV++N TLYGA+RYD+ RR Sbjct: 129 KTTTAAHLAQYLALNGYRVLAIDLDPQASMSALHGFQPEFDVKDNETLYGAVRYDEERRP 188 Query: 198 LSDIIRRTYFPLLDIVPANIELMEFEHETPKALAQRQSGDPLFFARVATVLGSVEANYDA 257 + D++++TYFP LD+VP N+ELMEFEH+T K L+ + +FF R+ + SV +YD Sbjct: 189 MRDVVKKTYFPNLDLVPGNLELMEFEHDTAKVLSSNDRKN-IFFTRMDDAIASVADDYDV 247 Query: 258 VVIDCPPQLGFLTLSALCAATAVLIPVHPQMLDVMSMSQFLLMTSDLLEVVAKAGGNMNY 317 VV+DCPPQLGFLT+SALCAATAVL+ VHPQMLDVMSM QFLLMTS+LL VVA AGG+MNY Sbjct: 248 VVVDCPPQLGFLTISALCAATAVLVTVHPQMLDVMSMCQFLLMTSELLSVVADAGGSMNY 307 Query: 318 DWMRYLVTRYEPGDGPQAQMVGFMRSLFGDRMITNMMLKSTAISDAGITKQTLYEVPREQ 377 DWMRYLVTRYEPGDGPQ QMV FMR++FGD ++ + MLKSTA+SDAGITKQTLYEV R+Q Sbjct: 308 DWMRYLVTRYEPGDGPQNQMVSFMRTMFGDHVLNHPMLKSTAVSDAGITKQTLYEVSRDQ 367 Query: 378 FTRSTYDRAMESLDGVNGEIQNLMQAAWGR 407 FTR+TYDRAMESLD VN EI+ L+Q++WGR Sbjct: 368 FTRATYDRAMESLDNVNSEIEQLIQSSWGR 397 >ref|YP_770902.1| replication protein RepA [Rhizobium leguminosarum bv. viciae 3841] emb|CAK02801.1| replication protein RepA [Rhizobium leguminosarum bv. viciae 3841] Length = 398 Score = 572 bits (1473), Expect = e-161, Method: Compositional matrix adjust. Identities = 281/390 (72%), Positives = 322/390 (82%), Gaps = 1/390 (0%) Query: 18 RAIHELIAADARELSAKLVAHRLKLFPPKAAKTLRRFSSGEAAKLIGVNDSYLRQLSLEK 77 +AIH+LIAA AR+LS L HR+KL+PP+A KTLR FSS EAAKLIGVND YLR LSLE Sbjct: 9 KAIHKLIAAHARDLSGALHEHRVKLYPPEARKTLRSFSSIEAAKLIGVNDGYLRHLSLEG 68 Query: 78 KGPDPEIGPAGRRLYSLSDIQALRTYLDETGKASRRYLPTRREGEHLQVIAVVNFKGGSG 137 KGP PEIG RR YS+ IQALR YLDE GK RRY P R EHLQVI VNFKGGSG Sbjct: 69 KGPQPEIGNNNRRSYSVETIQALREYLDENGKGDRRYSPRRSGREHLQVITAVNFKGGSG 128 Query: 138 KTTSAAHLAQHLALQGYRVLAVDLDPQASLSALHGYQPEFDVEENGTLYGAIRYDDSRRE 197 KTT+AAHLAQ+LAL GYRVLA+DLDPQAS+SALHG+QPEFDV +N TLYGA+RYD+ RR Sbjct: 129 KTTTAAHLAQYLALNGYRVLAIDLDPQASMSALHGFQPEFDVGDNETLYGAVRYDEERRP 188 Query: 198 LSDIIRRTYFPLLDIVPANIELMEFEHETPKALAQRQSGDPLFFARVATVLGSVEANYDA 257 L DII++TYF LD+VP N+ELMEFEH+T K L + +FF R+ + SV +YD Sbjct: 189 LKDIIKKTYFANLDLVPGNLELMEFEHDTAKVLGSNDRKN-IFFTRMDDAIASVADDYDV 247 Query: 258 VVIDCPPQLGFLTLSALCAATAVLIPVHPQMLDVMSMSQFLLMTSDLLEVVAKAGGNMNY 317 VV+DCPPQLGFLT+SALCAATAVL+ VHPQMLDVMSM QFLLMTS+LL VVA AGG+MNY Sbjct: 248 VVVDCPPQLGFLTISALCAATAVLVTVHPQMLDVMSMCQFLLMTSELLSVVADAGGSMNY 307 Query: 318 DWMRYLVTRYEPGDGPQAQMVGFMRSLFGDRMITNMMLKSTAISDAGITKQTLYEVPREQ 377 DWMRYLVTRYEPGDGPQ QMV FMR++FGD ++ + MLKSTAISDAGITKQTLYEV R+Q Sbjct: 308 DWMRYLVTRYEPGDGPQNQMVSFMRTMFGDHVLNHPMLKSTAISDAGITKQTLYEVSRDQ 367 Query: 378 FTRSTYDRAMESLDGVNGEIQNLMQAAWGR 407 FTR+TYDRAMESLD VN EI+ L+Q++WGR Sbjct: 368 FTRATYDRAMESLDNVNSEIEQLIQSSWGR 397