BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0080.0042.p (405 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_002290609.1| replication protein C [Oligotropha carboxido... 422 e-116 ref|YP_571931.1| replication initiation protein RepC [Nitrobacte... 407 e-111 ref|YP_571716.1| replication initiation protein RepC [Nitrobacte... 406 e-111 ref|YP_001220374.1| putative replication protein C [Bradyrhizobi... 405 e-111 ref|YP_003068121.1| replication protein C [Methylobacterium exto... 390 e-106 >ref|YP_002290609.1| replication protein C [Oligotropha carboxidovorans OM5] ref|YP_004634319.1| replication protein C [Oligotropha carboxidovorans OM5] gb|ACI94744.1| replication protein C [Oligotropha carboxidovorans OM5] gb|AEI04573.1| replication protein C [Oligotropha carboxidovorans OM4] gb|AEI08202.1| replication protein C [Oligotropha carboxidovorans OM5] Length = 410 Score = 422 bits (1084), Expect = e-116, Method: Compositional matrix adjust. Identities = 220/400 (55%), Positives = 279/400 (69%), Gaps = 12/400 (3%) Query: 2 IDSH-PTTPFGRRALTLAMMASQAAAKACPEDRVVHKWKIFRAITDARERLDISDRALTV 60 + SH PTTPFGRR+LTLA +ASQ A A P ++VVHKWKIF AI AR RL +S+R+L+V Sbjct: 1 MQSHSPTTPFGRRSLTLAHVASQMVATARPPEKVVHKWKIFHAICTARPRLAVSERSLSV 60 Query: 61 LNGLLTCLPETALT-PGNLVVFPSNASLSERTHGMAGTTLRRHLFALVNAGLIIRRDSPN 119 LN LLT PETALT +L+VFPSN LS RTHGM +TLRRHL LV+AGL++RRDSPN Sbjct: 61 LNALLTFHPETALTGEDDLIVFPSNHQLSLRTHGMPASTLRRHLAVLVDAGLVVRRDSPN 120 Query: 120 GKRYARRSGDGTIEQAFGFDLTPIVARADEFERLAEEVRIERRTVALARERVSILRRDIA 179 GKRYAR+ G IE AFGFDL+P+V R++EFE LA ++ E R + L RER+++ RRD+A Sbjct: 121 GKRYARKGSAGEIELAFGFDLSPLVVRSEEFESLAADIEAEARALKLVRERITLCRRDLA 180 Query: 180 KMIAVAAEEGA------QG--DWGDVRRRFAGLSGRLPRLVGLGFLEPLAESLESLAAEA 231 KMIA EEG QG DW ++ F + ++PR LEP+AE L LA + Sbjct: 181 KMIATGIEEGVPTRRGGQGPADWQEIHVVFRSIVDQIPRTATRQELEPIAEELSQLADDV 240 Query: 232 GKLLDSHLFAQKTDGNDSHSGAHYQNSNPDPFIELEPASQKGGGPIGETQPVPERRSQQT 291 LL++H+ N+SHS H QNSN DPFI+LEP+ +G E +P R ++ T Sbjct: 241 LNLLETHVKTTNPSANESHSERHIQNSNTDPFIDLEPSLPEGRAARIEPKPQAARMAEGT 300 Query: 292 TGFPLGMILKACPDIAMYSRTGIGSWPEFIATAAVVRSALGVSPSAWEDAVDAMGEGDAA 351 +PLGM+L ACPDI Y++ GI +W +F+ATAAVVRS LG+SPSAWE+A +GE AA Sbjct: 301 --YPLGMVLTACPDIVDYAKGGISNWRDFLATAAVVRSMLGISPSAWEEAQTVLGETQAA 358 Query: 352 VTVAAILQRSAEIKSPGGYLRGLTAKARAGNYSIGPQIMA 391 V VA ILQR A I+S GGYLRGLT KA AG +S+GP +M+ Sbjct: 359 VVVACILQRGAAIRSAGGYLRGLTRKAEAGEFSLGPILMS 398 >ref|YP_571931.1| replication initiation protein RepC [Nitrobacter hamburgensis X14] gb|ABE65099.1| replication protein C [Nitrobacter hamburgensis X14] Length = 410 Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust. Identities = 213/400 (53%), Positives = 272/400 (68%), Gaps = 12/400 (3%) Query: 2 IDSH-PTTPFGRRALTLAMMASQAAAKACPEDRVVHKWKIFRAITDARERLDISDRALTV 60 + SH PTTPFGRR+LTLA +ASQ A P ++VVHKWKIF AI AR RL +S+R+L+V Sbjct: 1 MQSHSPTTPFGRRSLTLAHVASQMVATTRPPEKVVHKWKIFHAICTARPRLGVSERSLSV 60 Query: 61 LNGLLTCLPETALT-PGNLVVFPSNASLSERTHGMAGTTLRRHLFALVNAGLIIRRDSPN 119 LN LLT PETALT +L+VFPSN LS R HGM +TLRRHL LV+AGL++RRDSPN Sbjct: 61 LNALLTFHPETALTGEDDLIVFPSNHQLSLRAHGMPASTLRRHLAVLVDAGLVVRRDSPN 120 Query: 120 GKRYARRSGDGTIEQAFGFDLTPIVARADEFERLAEEVRIERRTVALARERVSILRRDIA 179 GKRYAR+ G IE AFGFD++P+V R++EFE LA ++ E RT+ L RER+++ RRDIA Sbjct: 121 GKRYARKGTAGEIELAFGFDISPLVVRSEEFESLAADIEAEARTLKLVRERITLCRRDIA 180 Query: 180 KMIAVAAEEGA------QG--DWGDVRRRFAGLSGRLPRLVGLGFLEPLAESLESLAAEA 231 KMIA EEG QG DW +V F + ++PR LEP+A+ L LA + Sbjct: 181 KMIATGIEEGVPTRRGGQGPADWQEVHVAFRSIVDQIPRTATRQELEPVADELSQLADDV 240 Query: 232 GKLLDSHLFAQKTDGNDSHSGAHYQNSNPDPFIELEPASQKGGGPIGETQPVPERRSQQT 291 LL++H+ + N+SH+ H QNSN D I+ EP+ +G T+P P+ Sbjct: 241 LNLLETHIKSTNPSANESHTERHIQNSNTDSLIDFEPSLHEGRA--ARTEPKPQAPRVAE 298 Query: 292 TGFPLGMILKACPDIAMYSRTGIGSWPEFIATAAVVRSALGVSPSAWEDAVDAMGEGDAA 351 +PLGM+L ACPDI Y++ GI S + +ATAAVVRS LG+SPSAWEDA +GE AA Sbjct: 299 GSYPLGMVLNACPDIIDYAKGGISSLRDLLATAAVVRSMLGISPSAWEDAQTILGETPAA 358 Query: 352 VTVAAILQRSAEIKSPGGYLRGLTAKARAGNYSIGPQIMA 391 + VA ILQR A I+S GGYLRGLT KA AG +S+GP +M+ Sbjct: 359 IVVACILQRGAAIRSAGGYLRGLTRKAEAGEFSLGPILMS 398 >ref|YP_571716.1| replication initiation protein RepC [Nitrobacter hamburgensis X14] gb|ABE64884.1| replication protein C [Nitrobacter hamburgensis X14] Length = 410 Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust. Identities = 214/400 (53%), Positives = 274/400 (68%), Gaps = 12/400 (3%) Query: 2 IDSH-PTTPFGRRALTLAMMASQAAAKACPEDRVVHKWKIFRAITDARERLDISDRALTV 60 + SH PTTPFGRR+LTLA +ASQ A P ++VVHKWKIF AI AR RL +S+R+L+V Sbjct: 1 MQSHSPTTPFGRRSLTLAHVASQMVATTRPPEKVVHKWKIFHAICTARPRLGVSERSLSV 60 Query: 61 LNGLLTCLPETALT-PGNLVVFPSNASLSERTHGMAGTTLRRHLFALVNAGLIIRRDSPN 119 LN LLT PETALT +L+VFPSN LS R HGM +TLRRHL LV+AGL++RRDSPN Sbjct: 61 LNALLTFHPETALTGEDDLIVFPSNHQLSLRAHGMPASTLRRHLAVLVDAGLVVRRDSPN 120 Query: 120 GKRYARRSGDGTIEQAFGFDLTPIVARADEFERLAEEVRIERRTVALARERVSILRRDIA 179 GKRYAR+ G I+ AFGFDL+P+V R++EFE LA ++ E R + L RER+++ RRDIA Sbjct: 121 GKRYARKGTAGEIDLAFGFDLSPLVVRSEEFESLAADIEAEARALKLVRERITLCRRDIA 180 Query: 180 KMIAVAAEE------GAQG--DWGDVRRRFAGLSGRLPRLVGLGFLEPLAESLESLAAEA 231 KMIA EE G QG DW +V F L ++PR LEP+A L LA + Sbjct: 181 KMIATGIEEDVPTRRGGQGPADWQEVHVAFRSLVDQIPRTATRQELEPIAVELSQLADDV 240 Query: 232 GKLLDSHLFAQKTDGNDSHSGAHYQNSNPDPFIELEPASQKGGGPIGETQPVPERRSQQT 291 LL++H+ + N+SH+ H QNSN DP I+LEP+ +G E + R + T Sbjct: 241 LNLLETHIKSTNPSANESHTERHIQNSNTDPLIDLEPSLPQGRAAGAEPKLQAPRVGEGT 300 Query: 292 TGFPLGMILKACPDIAMYSRTGIGSWPEFIATAAVVRSALGVSPSAWEDAVDAMGEGDAA 351 +PLGM+L ACP+I Y++ GI +W +F+ATAAVVRS LG+SPSAWE+A +GE AA Sbjct: 301 --YPLGMVLNACPNIVDYAKGGISNWRDFLATAAVVRSMLGISPSAWEEAQTVLGETPAA 358 Query: 352 VTVAAILQRSAEIKSPGGYLRGLTAKARAGNYSIGPQIMA 391 + VA ILQR A I+S GGYLRGLT KA AG +S+GP +M+ Sbjct: 359 IVVACILQRGAAIRSAGGYLRGLTRKAEAGEFSLGPILMS 398 >ref|YP_001220374.1| putative replication protein C [Bradyrhizobium sp. BTAi1] gb|ABQ39702.1| putative replication protein C [Bradyrhizobium sp. BTAi1] Length = 410 Score = 405 bits (1042), Expect = e-111, Method: Compositional matrix adjust. Identities = 212/400 (53%), Positives = 271/400 (67%), Gaps = 12/400 (3%) Query: 2 IDSH-PTTPFGRRALTLAMMASQAAAKACPEDRVVHKWKIFRAITDARERLDISDRALTV 60 + SH PTTPFGRR+LTLA +ASQ A P +++VHKWKIF AI AR RL +S+R+L+V Sbjct: 1 MQSHSPTTPFGRRSLTLAHVASQMVATERPPEKIVHKWKIFHAICTARPRLGVSERSLSV 60 Query: 61 LNGLLTCLPETALT-PGNLVVFPSNASLSERTHGMAGTTLRRHLFALVNAGLIIRRDSPN 119 LN LLT PETALT +L+VFPSN L+ R HGM +TLRRHL LV+AGLI+RRDSPN Sbjct: 61 LNALLTFHPETALTGEDDLIVFPSNHQLTRRAHGMPASTLRRHLAVLVDAGLIVRRDSPN 120 Query: 120 GKRYARRSGDGTIEQAFGFDLTPIVARADEFERLAEEVRIERRTVALARERVSILRRDIA 179 GKRYAR+ G IE AFGFDL+P+V R++EFE LA ++ E R + L RER+++ RRDIA Sbjct: 121 GKRYARKDNAGEIELAFGFDLSPLVVRSEEFESLAADIEAEARALKLVRERITLCRRDIA 180 Query: 180 KMIAVAAEE------GAQG--DWGDVRRRFAGLSGRLPRLVGLGFLEPLAESLESLAAEA 231 KMIA EE G QG DW V F + ++PR LEP+A+ L LA + Sbjct: 181 KMIATGIEEAVPTRRGGQGPADWQVVHAAFRAIVDQIPRTATRQQLEPIADELSQLADDV 240 Query: 232 GKLLDSHLFAQKTDGNDSHSGAHYQNSNPDPFIELEPASQKGGGPIGETQPVPERRSQQT 291 LL++H+ ++ N+SHS H QNS P+ I+LEP ++G E + P R + Sbjct: 241 LNLLEAHIKSKNPSANESHSERHIQNSKPEDPIDLEPVLREGRAAGAEPKSQPSRVGE-- 298 Query: 292 TGFPLGMILKACPDIAMYSRTGIGSWPEFIATAAVVRSALGVSPSAWEDAVDAMGEGDAA 351 +PLGM+L ACPDI Y++ G+ +W +F+ATAAVVRS LG+SPSAWE+A MGE AA Sbjct: 299 GAYPLGMVLSACPDIVDYAKGGVSNWRDFLATAAVVRSMLGISPSAWEEAQKVMGEVPAA 358 Query: 352 VTVAAILQRSAEIKSPGGYLRGLTAKARAGNYSIGPQIMA 391 + VA ILQR I S GGYLRGLT KA G +S+GP +MA Sbjct: 359 IVVACILQRGTAINSAGGYLRGLTRKAEVGEFSLGPILMA 398 >ref|YP_003068121.1| replication protein C [Methylobacterium extorquens DM4] emb|CAX24241.1| replication protein C [Methylobacterium extorquens DM4] Length = 387 Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust. Identities = 199/371 (53%), Positives = 258/371 (69%), Gaps = 11/371 (2%) Query: 30 PEDRVVHKWKIFRAITDARERLDISDRALTVLNGLLTCLPETALT-PGNLVVFPSNASLS 88 P ++VVHKWKIF AI AR RL +S+R+L+VLN LLT PETALT +L+VFPSN LS Sbjct: 7 PPEKVVHKWKIFHAICTARPRLGVSERSLSVLNALLTFHPETALTGEDDLIVFPSNYQLS 66 Query: 89 ERTHGMAGTTLRRHLFALVNAGLIIRRDSPNGKRYARRSGDGTIEQAFGFDLTPIVARAD 148 R HGM +TLRRHL LV+AGL++RRDSPNGKRYAR+ G IE AFGFD++P+V R++ Sbjct: 67 LRAHGMPASTLRRHLAVLVDAGLVVRRDSPNGKRYARKGSAGEIELAFGFDISPLVVRSE 126 Query: 149 EFERLAEEVRIERRTVALARERVSILRRDIAKMIAVAAEEGA------QG--DWGDVRRR 200 EFE LA ++ E R + L RER+++ RRD+ KMIA EEG QG DW +V Sbjct: 127 EFESLAADIEAEARALKLVRERITLCRRDLGKMIATGIEEGVPTRRGGQGPADWQEVHAA 186 Query: 201 FAGLSGRLPRLVGLGFLEPLAESLESLAAEAGKLLDSHLFAQKTDGNDSHSGAHYQNSNP 260 F + ++PR LEP+AE L LA + LL++H+ + N+SHS H QNSN Sbjct: 187 FRSIVDQIPRTATRQELEPIAEELSQLADDVLNLLETHIKTKNPSANESHSERHIQNSNT 246 Query: 261 DPFIELEPASQKGGGPIGETQPVPERRSQQTTGFPLGMILKACPDIAMYSRTGIGSWPEF 320 DPFI+LEP+ ++GG E +P R ++ T +PLGM+L ACPDI Y++ GI +W +F Sbjct: 247 DPFIDLEPSLREGGAARAEPKPQTPRVAEGT--YPLGMVLSACPDIVDYAKGGISNWRDF 304 Query: 321 IATAAVVRSALGVSPSAWEDAVDAMGEGDAAVTVAAILQRSAEIKSPGGYLRGLTAKARA 380 +ATAAVVRS LG+SPSAWE+A +GE AA+ VA ILQR A I+S GGYLRGLT KA A Sbjct: 305 LATAAVVRSMLGISPSAWEEAQTILGETPAAIVVACILQRGAAIRSAGGYLRGLTRKAEA 364 Query: 381 GNYSIGPQIMA 391 G +S+GP +M+ Sbjct: 365 GEFSLGPILMS 375