BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0080.0009.p (1042 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_774728.1| hypothetical protein blr8088 [Bradyrhizobium ja... 1476 0.0 ref|YP_001415690.1| UvrD/REP helicase [Xanthobacter autotrophicu... 960 0.0 ref|ZP_08627076.1| exodeoxyribonuclease V beta chain [Bradyrhizo... 722 0.0 ref|ZP_01126945.1| possible ATP-dependent exodeoxyribonuclease s... 667 0.0 gb|EGP54043.1| UvrD/REP helicase [Agrobacterium tumefaciens F2] 662 0.0 >ref|NP_774728.1| hypothetical protein blr8088 [Bradyrhizobium japonicum USDA 110] dbj|BAC53353.1| blr8088 [Bradyrhizobium japonicum USDA 110] Length = 1099 Score = 1476 bits (3822), Expect = 0.0, Method: Compositional matrix adjust. Identities = 740/1029 (71%), Positives = 854/1029 (82%), Gaps = 6/1029 (0%) Query: 1 MQMVDGAERLRALTELDSCLLVEAAAGTGKTSLLAGRVVMLLAHGIDPRLIAAITFTELA 60 M +VD AER R LT+LDS LLVEA AGTGKTSLLAGRVVML+A G P I AITFTELA Sbjct: 1 MTVVDDAERRRVLTDLDSTLLVEAGAGTGKTSLLAGRVVMLMASGTSPGAIVAITFTELA 60 Query: 61 AGELRHRIASYLHRILEGRIPDELRPALPSGPDAAQTTMLRGAAKRLDELTCGTIHSFCH 120 AGELRHRI++YL +L G +P ELR LP GP Q L AA+RLDELTCGTIHS+CH Sbjct: 61 AGELRHRISTYLEALLGGAVPRELRLCLPDGPTPEQRRSLAVAAERLDELTCGTIHSYCH 120 Query: 121 DLLKTYSVEAAIDPGADVLDGDQADFVFDAIFDRWWRGRLDRTASAAGDPIASVARRDPI 180 DLL +YSVEA IDPGA+VLD D ADF+FD+ FDRWWR RLDR +AA DPIA VARR+P Sbjct: 121 DLLLSYSVEAGIDPGAEVLDADHADFLFDSTFDRWWRDRLDRPHAAADDPIAVVARRNPT 180 Query: 181 DAEGLLRSFAKFRRRHRGARPLPADLDAQADVEFAESVREFRRWCDQVDVPPEADPDIVA 240 AE LLRSF+KFRRR+R A+P P+DLD AD+EF ESVREFRRWCD VDVPPEADPDIVA Sbjct: 181 RAEELLRSFSKFRRRYRSAKPQPSDLDPSADLEFIESVREFRRWCDHVDVPPEADPDIVA 240 Query: 241 LETLVSHFRGRFDPMPDFEGLLELAHPAWLPIMRKDTSDLREYRRRTLWRK-AGGAAGER 299 LE L SHF G F P+P FE L ELAHP LPIMRKD S L +YRRR+LWRK AG A G+R Sbjct: 241 LEALASHFDGAFTPLPGFERLWELAHPPHLPIMRKDASVLLDYRRRSLWRKVAGKADGDR 300 Query: 300 LADQAEEHFGRCRRVYGALMGRIATAIIGIFSAELDEVMTEYETFKRRAAVLDFDDLLFT 359 LADQAEEH+ RCR YGALMGRIATAIIG FS ELD V+ +YE FKR AAVLDFDDLL+T Sbjct: 301 LADQAEEHYARCRTAYGALMGRIATAIIGSFSNELDGVLADYEAFKRSAAVLDFDDLLYT 360 Query: 360 CRDVLRDHPSVRTTAAERFSRLLVDEFQDTDPVQAEIIFLLCGTAEDDRTWHARSLRPGH 419 CR VLRD P VR TA ERFSR+LVDEFQDTDP+QAEIIFLLC A D WH ++LRPG Sbjct: 361 CRQVLRDFPIVRNTAGERFSRILVDEFQDTDPLQAEIIFLLCSDAADAAAWHTKALRPGQ 420 Query: 420 LFVVGDPKQAIYRFRGADLATYLRVRETIEAQFPDNILRVTANFRSRGQILDHVNRCFEE 479 LFVVGDPKQAIYRFRGADLATYL VR++IE QFP NI++V+ANFRSR IL HVN CF E Sbjct: 421 LFVVGDPKQAIYRFRGADLATYLTVRQSIERQFPGNIVKVSANFRSRDPILRHVNECFSE 480 Query: 480 RLSSQQAGYVALQTTRAAGEHGLPCVAKVSVELPPLTRVDSARDEEAQAVAEVCSRLIGN 539 LS QQAGYVAL TR A ++ LP VAK+SVELPP T V SARDEEA+ VAEVC+RLIGN Sbjct: 481 HLSQQQAGYVALHATRGASDNALPGVAKISVELPPETNVASARDEEARVVAEVCARLIGN 540 Query: 540 VDIKLNDGETRRLCPGDIALLAPVSTDLWRYERALEEAGLPFASQAGKNLYKRQEAQDLV 599 V++KLNDG RRL PGDIALLAPVSTDLWRYERALEEAG+PFASQAGKNL+KRQEAQDLV Sbjct: 541 VELKLNDGRARRLTPGDIALLAPVSTDLWRYERALEEAGIPFASQAGKNLFKRQEAQDLV 600 Query: 600 ALIRALADTRDTLALGALMRGPLVGLTEQELLDITADLPV--DGDRIAGLSLRTEPAAVR 657 AL+RALAD RDTLALGAL+RGPLVGLTE+ELLDIT+DLP D D+IAGL++ T+PA V Sbjct: 601 ALVRALADPRDTLALGALLRGPLVGLTERELLDITSDLPPSEDPDQIAGLTILTDPATVH 660 Query: 658 NPVAREVLTVLTDLRRRINATAPAFVLAEAIERLRIRAIVAARSGEQAARALANVDGFVE 717 + AREVL +L DLRRR+N T+PA +LAEAIERLR+R+IVAARS +QA R+LAN+DGF+E Sbjct: 661 HDTAREVLGILGDLRRRVNGTSPAMILAEAIERLRVRSIVAARSADQAVRSLANIDGFLE 720 Query: 718 RARSYDVRGFVQFARDIDDEWSSGSASPEGMMEADGQSIEIVTVHSSKGLEWPVVIPINR 777 RARSY VRGF +FARDID+EWS GS+S EGM+EADGQSIEIVTVHSSKGLEWPVVIPINR Sbjct: 721 RARSYRVRGFARFARDIDEEWSDGSSSAEGMVEADGQSIEIVTVHSSKGLEWPVVIPINR 780 Query: 778 SSMPRRAEAFVHRRRDESLHWALGQVVPPGLGDALRTEEAEKRDENVRLLYVACTRAMEL 837 +SMPRR+E FV+RR DESLHWALG+++PP L DAL TEEAEKR EN+RLLYVACTRAME Sbjct: 781 ASMPRRSETFVYRRSDESLHWALGKIIPPSLADALLTEEAEKRAENLRLLYVACTRAMES 840 Query: 838 LVIPDFSWSNDASWAKLLDFKLETVPELDIGRLPRTPVASRVPVANGQTAQIFAEERSRI 897 L+IPDFSWSND SWAKLL F+ +T+P+LDI PR V+ N Q+A+IFAEER+R+ Sbjct: 841 LIIPDFSWSNDDSWAKLLSFRSDTIPQLDISGFPRARVSPSSAAENLQSAEIFAEERARL 900 Query: 898 EAAPRVRWIKPSDSDPDVITDELSFETGEELP-RAETTVEGGRIRGILLHKLMEELISGE 956 EAAP+VRWI PS+ DPDVIT++L++E G++ P RA TTVEGGRIRGILLHKLMEEL++GE Sbjct: 901 EAAPKVRWITPSEGDPDVITEQLAWEAGDDEPLRARTTVEGGRIRGILLHKLMEELVTGE 960 Query: 957 LEENQEAATARSNELFDQLSSMAPTLSAIDVRELASTALRTLRLPDVDRYRGRLVAEVPV 1016 L E+ E A +R+ +L DQL S++P+ + +D ELA+TAL+T+RLP++ +R L+AEVP+ Sbjct: 961 LVESSEDAASRAAQLRDQLFSVSPS-TTVDAEELAATALKTIRLPELKPFRSGLMAEVPI 1019 Query: 1017 YGTAGGAGA 1025 + A AGA Sbjct: 1020 HAVA-AAGA 1027 >ref|YP_001415690.1| UvrD/REP helicase [Xanthobacter autotrophicus Py2] gb|ABS66033.1| UvrD/REP helicase [Xanthobacter autotrophicus Py2] Length = 1107 Score = 960 bits (2481), Expect = 0.0, Method: Compositional matrix adjust. Identities = 529/1026 (51%), Positives = 686/1026 (66%), Gaps = 12/1026 (1%) Query: 2 QMVDGAERLRALTELDSCLLVEAAAGTGKTSLLAGRVVMLLAHGIDPRLIAAITFTELAA 61 ++ D A RLRALTEL LLVEAAAGTGKT+L+AGRV MLL G +PR IAAITFTELAA Sbjct: 3 KLADEAARLRALTELHLTLLVEAAAGTGKTALMAGRVTMLLMSGAEPRSIAAITFTELAA 62 Query: 62 GELRHRIASYLHRILEGRIPDELRPALPSGPDAAQTTMLRGAAKRLDELTCGTIHSFCHD 121 L R+ Y+ +L GR+P LR ALP G AQ +L AA +LDELT TIH+FC Sbjct: 63 SALGARVHRYVDDLLAGRVPKPLREALPDGLTDAQRRILSEAAGKLDELTATTIHAFCQT 122 Query: 122 LLKTYSVEAAIDPGADVLDGDQADFVFDAIFDRWWRGRLDRTASAAGDPIASVARRDPID 181 ++ +Y+VEA IDPGA +LD QA+ F+A+F++W+R RL+ A A DPIAS+++ DP Sbjct: 123 IICSYAVEADIDPGARILDAAQAEAAFEAVFEQWFRRRLNGPARA-DDPIASLSQYDPHH 181 Query: 182 AEGLLRSFAKFRRRHRGARPLPADLDAQADVEFAESVREFRRWCDQVDVPPEADPDIVAL 241 LR+ A+FR HRGAR ADL + D++ E+V +FRRW + P+ + L Sbjct: 182 VAATLRNLARFRLEHRGARAPAADLSGRPDIDLVEAVADFRRWLSAQPLEPKTLELVGQL 241 Query: 242 ETLVSHFRGRFDPMPDFEGLLELAHPAWLPIMRKDTSDLREYRRRTLWRKAGGA-AGERL 300 ETL HF G F P F+ L LAHPA LP MR+ T DL R +T W KA G G L Sbjct: 242 ETLADHFAGSFATAPVFDTLWRLAHPARLPCMRRYTFDLLTPRTKTAWDKAAGKDRGAEL 301 Query: 301 ADQAEEHFGRCRRVYGALMGRIATAIIGIFSAELDEVMTEYETFKRRAAVLDFDDLLFTC 360 +A HF R Y ++GR+ATA++ S ELDEV+ +Y FKR AAVLDFDDLL Sbjct: 302 NAEAGRHFARVDHCYRVILGRVATALVAKLSDELDEVLADYAAFKRAAAVLDFDDLLERA 361 Query: 361 RDVLRDHPSVRTTAAERFSRLLVDEFQDTDPVQAEIIFLLCGTAEDDRTWHARSLRPGHL 420 R ++R H +VR +R+S + VDEFQDTDP+QAEI+F + R W LR G L Sbjct: 362 RALVRGHDAVRRALGQRYSHIFVDEFQDTDPIQAEILFRIAADDSPPR-WQDSRLRAGAL 420 Query: 421 FVVGDPKQAIYRFRGADLATYLRVRETIEAQFPDNILRVTANFRSRGQILDHVNRCFEER 480 F+VGDPKQAIYRFRGAD+ +Y R I ++P+NI+++TANFRSR IL H+NRCF Sbjct: 421 FMVGDPKQAIYRFRGADVGSYAEARSAIARRWPNNIVQITANFRSRPAILSHINRCFATP 480 Query: 481 LSSQ-QAGYVALQTTRAAGEHGLPCVAKVSVELPPLTRVDSARDEEAQAVAEVCSRLIGN 539 LS+Q Q GYV L T +H LPC AK++++LPP +R RD EA+ VA++C+RLIGN Sbjct: 481 LSAQNQPGYVELAPTLDPPDHDLPCAAKITIDLPPDSRAAQIRDAEAEVVADLCARLIGN 540 Query: 540 VDIKLNDGETRRLCPGDIALLAPVSTDLWRYERALEEAGLPFASQAGKNLYKRQEAQDLV 599 V I+ DG+ L PG IALLAP ++LWRYERA E GL ASQAGK L++RQE QDLV Sbjct: 541 VTIRDEDGDLAPLTPGGIALLAPTGSELWRYERAFEARGLRIASQAGKGLFRRQEVQDLV 600 Query: 600 ALIRALADTRDTLALGALMRGPLVGLTEQELLDITADLPVDGDR---IAGLSLRTEPAAV 656 AL+R LAD DTLA GALMRGPLVGL+E+ELLDITA LP DR I SL T+ V Sbjct: 601 ALVRVLADGGDTLAFGALMRGPLVGLSEEELLDITAGLPPLADRPEAIPRFSLATDADDV 660 Query: 657 RNPVAREVLTVLTDLRRRINATAPAFVLAEAIERLRIRAIVAARSGEQAARALANVDGFV 716 +PVAR VLT+L DLRRR AT PA +LAEA+ERL +R I++AR G+++ARA ANV+ + Sbjct: 661 AHPVARRVLTILQDLRRRARATTPALLLAEAVERLAVRPILSAREGDRSARAAANVEALL 720 Query: 717 ERARSYDVRGFVQFARDIDDEWSSGSASPEGMMEADGQSIEIVTVHSSKGLEWPVVIPIN 776 ERAR Y V+G +FARD+ +W G+A EG ++ADG +IEI+T+HS+KGLEWPVVIPIN Sbjct: 721 ERARPYGVKGMKRFARDVSRDWRGGAAYNEGRVDADGDAIEIITIHSAKGLEWPVVIPIN 780 Query: 777 RSSMPRRAEAFVHRRRDESLHWALGQVVPPGLGDALRTEEAEKRDENVRLLYVACTRAME 836 +++ R E FVHR D++LHW +G VVPP L AL T++ E RL YVACTRA E Sbjct: 781 TATLLRSREPFVHRADDDTLHWVIGDVVPPELRAALETDDESLTRERERLWYVACTRARE 840 Query: 837 LLVIPDFSWSNDASWAKLLDFKLETVPELDIGRLPRTPVASRVPVANGQTAQIFAEERSR 896 LL++P+ + + SWA++++ + +PELDI R+ P+ N QTA++FA ER+ Sbjct: 841 LLIVPELAQAEQKSWARVVNLGHDALPELDISRMTPAPMPMSADPPNTQTAELFAAERAT 900 Query: 897 I-EAAPRVRWIKPSDSDPDVI--TDELSFETGEELPRAETTVEGGRIRGILLHKLMEELI 953 I EAA + W++PSD DPD + + ++ + G+ P + V GR+RG+LLHKLMEE++ Sbjct: 901 IEEAAVALTWVRPSDHDPDRLEAVEAITLDAGDA-PEVDLPVGAGRVRGLLLHKLMEEVL 959 Query: 954 SGELEENQEAATARSNELFDQLSSMAPTLSAI-DVRELASTALRTLRLPDVDRYRGRLVA 1012 SGEL E +R+ EL +L A+ D E+A+TA RTL+LPD+ R RL Sbjct: 960 SGELVEEVGRFVSRARELLTELVLDPDDSEALPDSDEIAATAWRTLQLPDIAALRDRLTP 1019 Query: 1013 EVPVYG 1018 E PVY Sbjct: 1020 EWPVYA 1025 >ref|ZP_08627076.1| exodeoxyribonuclease V beta chain [Bradyrhizobiaceae bacterium SG-6C] gb|EGP10356.1| exodeoxyribonuclease V beta chain [Bradyrhizobiaceae bacterium SG-6C] Length = 1061 Score = 722 bits (1864), Expect = 0.0, Method: Compositional matrix adjust. Identities = 426/995 (42%), Positives = 587/995 (58%), Gaps = 10/995 (1%) Query: 34 LAGRVVMLLAHGIDPRLIAAITFTELAAGELRHRIASYLHRILEGRIPDELRPALPSGPD 93 +AGRV M+LA G P IAAITFTELAA +L RI + R+L IPD ++P LP G Sbjct: 1 MAGRVAMMLASGYHPGDIAAITFTELAASQLARRIKETVDRLLMRDIPDFIKPVLPHGLT 60 Query: 94 AAQTTMLRGAAKRLDELTCGTIHSFCHDLLKTYSVEAAIDPGADVLDGDQADFVFDAIFD 153 AAQ L AA RLDELT TIH FC +++++ V+A +DPG ++D A+ +F Sbjct: 61 AAQHAALSAAAPRLDELTATTIHGFCQAVIRSHGVQAGLDPGTRIVDETVANSLFLGELS 120 Query: 154 RWWRGRLDRTASAAGDPIASVARRDPIDAEGLLRSFAKFRRRHRGARPLPADLDAQADVE 213 W+ RL A DPI +A + P+ L+ AK RR+H A P+ +A+ D+ Sbjct: 121 TWFSRRLAADA-IEDDPIVVLAEQIPLKVVDLISELAKLRRKHPEAAPILPPENARPDIV 179 Query: 214 FAESVREFRRWCDQVDVPPEADPDIVALETLVSHFRGRFDPMPDFEGLLELAHPAWLPIM 273 F ++V +F RW + A L L + + FD P+F L +L P + Sbjct: 180 FFQAVDDFGRWEASIANDKCAHGIAQELRRLATRYEHAFDSRPNFATLWQLCVPDSCRLF 239 Query: 274 RKDTSDLREYRRRTLWRKAGGAAGERLADQAEEHFGRCRRVYGALMGRIATAIIGIFSAE 333 K LR Y G E ++ A H+ + L+G IA +++ S+ Sbjct: 240 GKGLQ-LRTYVESA--EVFGAYPDETASEIALHHYQVVVDAWNELIGHIAASLVCTLSSS 296 Query: 334 LDEVMTEYETFKRRAAVLDFDDLLFTCRDVLRDHPSVRTTAAERFSRLLVDEFQDTDPVQ 393 LD ++ Y+ KR AAVLDFDDLL R ++R + VR +R+ +LVDEFQDTD +Q Sbjct: 297 LDLLLESYQARKRAAAVLDFDDLLLHVRSLVRGYEEVRRAIGQRYKYILVDEFQDTDRIQ 356 Query: 394 AEIIFLLCGTAEDDRTWHARSLRPGHLFVVGDPKQAIYRFRGADLATYLRVRETIEAQFP 453 EI+F + T + +W LRPG LF+VGDPKQAIYRFRGAD+ Y R I AQ Sbjct: 357 NEILFSIAATDDRPESWEDNRLRPGSLFLVGDPKQAIYRFRGADIEAYELCRRLIGAQEG 416 Query: 454 DNILRVTANFRSRGQILDHVNRCFEERLS-SQQAGYVALQTTRAAGEHGLPCVAKVSVEL 512 ++ VTANFRS+ IL HVN CF + + Q YVAL T + LPCV + ++++ Sbjct: 417 GAVIEVTANFRSQQAILRHVNSCFAPVFAQTGQPRYVALAPTIPDHSYPLPCVTRFTIQV 476 Query: 513 PPLTRV--DSARDEEAQAVAEVCSRLIGNVDIKLNDGETRRLCPGDIALLAPVSTDLWRY 570 R+ + R+ EA VA++CSRLIGNV I+ D L PGDI LL P +LWRY Sbjct: 477 VTEGRIYAEMFREAEASRVADICSRLIGNVMIRRADNSVSPLRPGDIVLLTPGHRELWRY 536 Query: 571 ERALEEAGLPFASQAGKNLYKRQEAQDLVALIRALADTRDTLALGALMRGPLVGLTEQEL 630 ERALE+ GL +SQAG+ L +RQE QD++AL+R LAD+ DTLA GALMRGPLVGL++QEL Sbjct: 537 ERALEQRGLAVSSQAGQTLMRRQETQDILALLRVLADSSDTLAFGALMRGPLVGLSDQEL 596 Query: 631 LDITADLPVDGDRIAGLSLRTEPAAVRNPVAREVLTVLTDLRRRINATAPAFVLAEAIER 690 LDITA LP G+R ++RT+PA VR+PVA+ VL +L +LRRR T P+ +L E+IER Sbjct: 597 LDITASLPWTGERADFFNVRTDPALVRHPVAQSVLVILQELRRRAATTTPSLILGESIER 656 Query: 691 LRIRAIVAARSGEQAARALANVDGFVERARSYDVRGFVQFARDIDDEWSSGSASPEGMME 750 L R I+AAR G + ARALAN+D +ERARSY V G F RD+ +W PEG ++ Sbjct: 657 LNARVIMAARHGNRNARALANLDMLIERARSYGVAGLRTFVRDLQADWERNVRVPEGRID 716 Query: 751 ADGQSIEIVTVHSSKGLEWPVVIPINRSSMPRRAEAFVHRRRDESLHWALGQVVPPGLGD 810 A +IEI+T+H++KGLEWPVVIPIN ++ R + FVHR+ D +LHW +G V P L Sbjct: 717 AAEHAIEIMTIHTAKGLEWPVVIPINSTTELYRPDQFVHRQSDNTLHWMIGGVASPDLAV 776 Query: 811 ALRTEEAEKRDENVRLLYVACTRAMELLVIPDFSWSNDASWAKLLDFKLETVPELDIGRL 870 A E E ++ R+ YVACTRA +LL++P ++ ++W +D +PE + Sbjct: 777 ARAEESREDANQRERIWYVACTRARDLLILPHIPQASKSTWFSSIDLLQREIPEFGLPNP 836 Query: 871 PRTPVASRVPVANGQTAQIFAEERSRIE-AAPRVRWIKPSDSDPDVITDEL-SFETGEEL 928 V ++N Q+A +FA E+ ++E +AP + W +PSD D D + D L + + L Sbjct: 837 SAPDVRQAGALSNEQSADVFALEQQKVEDSAPPIVWRRPSDHDQDRLDDPLDTVVVFDAL 896 Query: 929 PRAETTVEGGRIRGILLHKLMEELISGELEENQEAATARSNELFDQLSSMAPTLSAI-DV 987 GR+RGI+LHKLMEE ++GEL+E++ AA +R+ L QL + + D Sbjct: 897 AEQRDVAGAGRLRGIILHKLMEEFLTGELKEDEGAAVSRAKHLLLQLLTETDGRQQLPDR 956 Query: 988 RELASTALRTLRLPDVDRYRGRLVAEVPVYGTAGG 1022 E+A ALR L LP++ R LV EVPV+ G Sbjct: 957 TEMARCALRALALPNIAALRAFLVPEVPVWAAGDG 991 >ref|ZP_01126945.1| possible ATP-dependent exodeoxyribonuclease subunit A [Nitrococcus mobilis Nb-231] gb|EAR22195.1| possible ATP-dependent exodeoxyribonuclease subunit A [Nitrococcus mobilis Nb-231] Length = 1117 Score = 667 bits (1722), Expect = 0.0, Method: Compositional matrix adjust. Identities = 439/1044 (42%), Positives = 591/1044 (56%), Gaps = 39/1044 (3%) Query: 2 QMVDGAERLRALTELDSCLLVEAAAGTGKTSLLAGRVVMLLAHGIDPRLIAAITFTELAA 61 +++D +RLRALT +DS LLVEA AG+GKT+L+AGR+V LA GI+P IAAITFTELAA Sbjct: 3 ELIDHRQRLRALTAIDSTLLVEAGAGSGKTALMAGRIVYSLAQGIEPGRIAAITFTELAA 62 Query: 62 GELRHRIASYLHRILEGRIPDELRPALPSGPDAAQTTMLRGAAKRLDELTCGTIHSFCHD 121 G+L RI +L R L G P EL+ A P G A+ L A +RL ELT TIH FC Sbjct: 63 GQLLIRIRGFLERALRGETPVELQAAFPKGLSDAERIRLTTARERLAELTATTIHGFCQQ 122 Query: 122 LLKTYSVEAAIDPGADVLDGDQADFVFDAIFDRWWRGRLDRTASAAGDPIASVARRDPID 181 L++ Y VEA IDPGA ++D A+ + + + + R RL+ A+ GDP+ + + Sbjct: 123 LIRPYPVEADIDPGAAIMDAPAAELAWQDLLEAFLRERLE--AADEGDPLVAFIEAAGAN 180 Query: 182 AEGLLRSFAKFRRRHRGARPLPADLDAQADVEFAESVREFRRWC-DQVDVPPEADPDIVA 240 + + A+F RR R P+ A + E+V W +Q+ P + Sbjct: 181 SAAEIDRIARFLRRSRSTDPVAAQDATKWLESLHEAVTALANWLQEQLCSEPSTVELVAE 240 Query: 241 LETLVSHFRGRFDPMPDFEGLLELAHPAWLPIMRKDTSDL--REYRRRTLWRKAG----- 293 L LV +R L+ LA P T L R++ R+ W+ A Sbjct: 241 LRALVQVYRRALQHGASPRALMALAFVP--PRCSAHTQKLTFRKWGRQGKWQSAATASGL 298 Query: 294 -GAAGERLADQAEEHFGRCRRVYGALMGRIATAIIGIFSAELDEVMTEYETFKRRAAVLD 352 AAG L+ + E + AL G +A + L ++ Y+ +KR AA+LD Sbjct: 299 SKAAGTALSREGEALYQVVGAACTALQGAVAIGAFEQLAESLRPLLERYQDYKRAAALLD 358 Query: 353 FDDLLFTCRDVLRD--HPSVRTTAAERFSRLLVDEFQDTDPVQAEIIFLLCGTAEDDRTW 410 FDDLL T +LRD + VR + R+ +LVDEFQDTDP+Q EI++ LCG D W Sbjct: 359 FDDLLATACALLRDPANEPVRRALSARYRYILVDEFQDTDPLQVEILWRLCGEGTHDTPW 418 Query: 411 HARSLRPGHLFVVGDPKQAIYRFRGADLATYLRVRETIEAQFPDNILRVTANFRSRGQIL 470 R LR G LF VGDPKQAIYRFRGAD+ATY+ RE ++A P+ IL VTANFRS IL Sbjct: 419 QERVLRSGALFCVGDPKQAIYRFRGADVATYVAARERLKAADPECILEVTANFRSYRPIL 478 Query: 471 DHVNRCFEERLSS-QQAGYVALQTTRAAGEHGLPCVAKVSVELPPL---TRVDSARDEEA 526 + VN F L++ Q G+ L TR + P V +++V + R R+ EA Sbjct: 479 EWVNERFAAPLTAVGQPGFQPLAPTRTPPDDA-PRVVRLTVPVAAADDKPRPSECREAEA 537 Query: 527 QAVAEVCSRLIGNVDIKLNDGETRRLC-PGDIALLAPVSTDLWRYERALEEAGLPFASQA 585 Q VAE+C RLIG I + G R C PGDI LLAP T+LWRYERALE+ G+ ASQA Sbjct: 538 QRVAELCQRLIGGYPI--HTGRRPRPCRPGDIVLLAPSGTELWRYERALEDRGVAVASQA 595 Query: 586 GKNLYKRQEAQDLVALIRALADTRDTLALGALMRGPLVGLTEQELLDITADLPVDGDRIA 645 GK ++RQE QDL+A+ R LAD RDT+ALGAL+RGPLVGLTE+ LLDI LP D A Sbjct: 596 GKGFFRRQEIQDLIAITRVLADARDTVALGALLRGPLVGLTEEALLDIVDQLPPPED-CA 654 Query: 646 G---LSLRTEPAAVRNPVAREVLTVLTDLRRRINATAPAFVLAEAIERLRIRAIVAARSG 702 G L+L TEPA V + +AR L +L L R T P +L +A+ L +R ++ R Sbjct: 655 GSARLTLWTEPAYVADTLARTTLEILQALAARALDTTPFALLGQAVAELHVRPLLIHRHS 714 Query: 703 EQAARALANVDGFVERARSYDVRGFVQFARDIDDEWSSGSASPEGMMEADGQSIEIVTVH 762 A RALANV+ F+E ++ Y RG FA D+ W AS EG +A ++ ++T+H Sbjct: 715 GGAERALANVELFLEMSKPYAARGLFAFAADMRTRWEDAEASTEGRPDAQEHAVHLITMH 774 Query: 763 SSKGLEWPVVIPINRSSMPRRAEAFVHRRRDESLHWALGQVVPPGLGDALRTEEAEKRDE 822 S+KGLEWP+VIP+N S R A + R D+ +H+ LG AL E+AE+R E Sbjct: 775 SAKGLEWPIVIPVNTVSEGRAAGGPLFDRSDQRIHYCLGAFRAERYVTALDEEKAEQRRE 834 Query: 823 NVRLLYVACTRAMELLVIPDFSWSNDASWAKLLDFKLETVPELDIGRLPRTPVASRVP-- 880 VRLLYVA TRA +LLV+P ++ W LLD +L+ +P LD G + + R+P Sbjct: 835 QVRLLYVAFTRAEQLLVLPQ-PLEAESGWFGLLDLRLDQLPTLDDGGWGSS-LPERIPAQ 892 Query: 881 VANGQTAQIFAEERSRIEAAPR-VRWIKPSDSDPDVITDELSFET---GEELPRAETTVE 936 + NGQ F E RI+AA R + W +PS+ +P ++ E+ E A + E Sbjct: 893 IINGQDRVRFQHEAQRIQAARRALVWRRPSEHEPAGAAPSMAEESSVFAEPAADAMSPAE 952 Query: 937 GGRIRGILLHKLMEELISGELEENQEAATARSNELFDQLSSM---APTLSAIDVRELAST 993 GG +RG +LHKLMEE+++ E++E + R+ EL QL+ AP +S ELA Sbjct: 953 GGALRGTVLHKLMEEVLTEEVDEAAQVLQTRAAELLAQLAPAPVEAPPISDSPA-ELAEV 1011 Query: 994 ALRTLRLPDVDRYRGRLVAEVPVY 1017 RTL LP V R RL+AEVP+Y Sbjct: 1012 VRRTLALPVVVALRTRLLAEVPIY 1035 >gb|EGP54043.1| UvrD/REP helicase [Agrobacterium tumefaciens F2] Length = 1131 Score = 662 bits (1709), Expect = 0.0, Method: Compositional matrix adjust. Identities = 427/1054 (40%), Positives = 601/1054 (57%), Gaps = 53/1054 (5%) Query: 3 MVDGAERLRALTELDSCLLVEAAAGTGKTSLLAGRVVMLLAHGIDPRLIAAITFTELAAG 62 + D + R A++ + +LVEA AG+GKT+++AGR+ ++LA G+ PR IAA+TFTELAA Sbjct: 9 LKDDSARRDAISGHERSILVEAGAGSGKTAVMAGRIAVMLAQGVAPRAIAAVTFTELAAS 68 Query: 63 ELRHRIASYLHRILEGRIPDELRPALPSGPDAAQTTMLRGAAKRLDELTCGTIHSFCHDL 122 EL R+ ++ + G I ELR LPSG Q L A+ +DE+TC TIH FC L Sbjct: 69 ELLSRVREFVSDLAAGHIAPELRVGLPSGLSQMQRDNLIAASAAIDEITCSTIHGFCQRL 128 Query: 123 LKTYSVEAAIDPGADVLDGDQADFVFDAIFDRWWRGRLDRTASAAGDP---IASVARRDP 179 +K Y EA IDPGA V+D +QAD F I D W R RL +GD +A + P Sbjct: 129 IKPYPAEADIDPGATVIDRNQADLTFLEIVDGWLRERL------SGDHDGILAEMVLHSP 182 Query: 180 IDAEGLLRSFAKFRRRHRGARPLPADLDAQADVEFAESVREFRRWCDQVDVPPEA----D 235 + L+ A+ RR R L A A A+ + FR+ D + + + Sbjct: 183 GETVALMHRVAEALRRRRS-------LVAPAVTPLADHLEAFRQAADDLSAFMQTASVRE 235 Query: 236 PDIVALETLVSHFRGRFDPMPDFE---GLLELAHPAWLPIMRKDTSDLREYRRRTLWRKA 292 P+ S R + + E GL+ L P + D YR++ W A Sbjct: 236 PETEVYAARFSEMAARLPAVSNAETPAGLVGLLVSRPHPDLCTKAGDFSSYRKKGKWAAA 295 Query: 293 ------GGAAGERLADQAEEHFGRCRRVYGALMGRIATAIIGIFSAELDEVMTEYETFKR 346 A +RL D AE+ F C + AL+ + ++ E ++ Y KR Sbjct: 296 AKQAGLSKADADRLNDAAEDFFDACCAAWTALLQSASGQVLAALIDEARPMLDRYREHKR 355 Query: 347 RAAVLDFDDLLFTCRDVLRDHPSVRTTAAERFSRLLVDEFQDTDPVQAEIIFLLCG-TAE 405 +A LDFDDL++ RD+L DH +VR +R++++LVDEFQDTDP+QAEI + LCG E Sbjct: 356 ASAQLDFDDLIYAARDLLSDHEAVRRALGQRYAKVLVDEFQDTDPLQAEIFWRLCGDPVE 415 Query: 406 DDRTWHARSLRPGHLFVVGDPKQAIYRFRGADLATYLRVRETIEAQFPDNILRVTANFRS 465 D R W + +RPG LF+VGDPKQAIYRFRGAD+ Y++ R Q D ++ ++ NFRS Sbjct: 416 DPRDWVSFRIRPGALFLVGDPKQAIYRFRGADVGAYVQARAAFSVQDADGLVSISTNFRS 475 Query: 466 RGQILDHVNRCFEERLSSQ-QAGYVALQTTRAAGEHGLPCVAKVSVELPPLTRVDSA--- 521 IL VN FE LS+ Q G+ AL + G CVA + + + SA Sbjct: 476 CASILTFVNERFEAILSADGQPGFTALDPFH--DDRGGVCVAALDIAVADENGKASAEQQ 533 Query: 522 RDEEAQAVAEVCSRLIGNVDIKLNDGETRRLC-PGDIALLAPVSTDLWRYERALEEAGLP 580 RD EA AVAE+C+RLIG+ + R C PGDIALLAP DLWRYE ALE G+P Sbjct: 534 RDAEADAVAELCARLIGSHPVLDRKAGAERPCQPGDIALLAPTGADLWRYEEALERRGIP 593 Query: 581 FASQAGKNLYKRQEAQDLVALIRALADTRDTLALGALMRGPLVGLTEQELLDITADLP-- 638 A+QAGK L++RQE QDL+AL RALAD RDTLALGAL+RGPLVGL+E+ELLD+ LP Sbjct: 594 VATQAGKGLFRRQEVQDLIALTRALADRRDTLALGALLRGPLVGLSEEELLDVVWALPRS 653 Query: 639 -VDGDRIAGLSLRTEPAAVRNPVAREVLTVLTDLRRRINATAPAFVLAEAIERLRIRAIV 697 + DRI L L +PAA+ +P+AR+V+ L L+RR N+T P +L++A++ LR+R I+ Sbjct: 654 EEEPDRIPRLDLGVDPAAISHPLARDVIEKLQALQRRGNSTTPHQLLSQAVDVLRLRPIL 713 Query: 698 AARSGEQAARALANVDGFVERARSYDVRGFVQFARDIDDEWSSGSASPEGMMEADGQSIE 757 R QA RALANVD ++ + SY VRG F+ + W+ + + EG +A +++ Sbjct: 714 LDRHRGQAERALANVDLYLSLSNSYAVRGLRAFSEAMTAAWTDEARAVEGRPDAQEEAVA 773 Query: 758 IVTVHSSKGLEWPVVIPINRSSMPRRAEAFVHRRRDESLHWALGQVVPPGLGDALRTEEA 817 + T+H++KGLEWPVVIPIN + ++ V R++++ + + V P G A + E+A Sbjct: 774 LFTMHAAKGLEWPVVIPINTMTGVMAPDSAVIDRQNDTFYCPVLGVPPSGYDTARQAEKA 833 Query: 818 EKRDENVRLLYVACTRAMELLVIPDFSWS-NDASWAKLLDFKLETVPELDIGRLPRTPVA 876 E E VRL YVA TRA ELL++P + + ++W L+D L + LD+ LP PV Sbjct: 834 ELDRERVRLWYVAATRARELLILPRLDVAPSKSAWISLVDLSLAGLAALDVSHLPPDPVV 893 Query: 877 SRVPVANGQTAQIFAEERSRI-EAAPRVRWIKPS---DSDPDVITDELS-FETG--EELP 929 +N QT + FA E S I + R++W+ PS ++ V+ +E + TG + P Sbjct: 894 VADGHSNSQTRESFAAEASAIADQQIRLKWLAPSRDENAAGTVLQEEQADIWTGSDDNTP 953 Query: 930 R---AETTVEGGRIRGILLHKLMEELISGELEENQEAATARSNELFDQLS--SMAPTLSA 984 A +TV+GGR RG++LHKLMEE+++GE ++ A +AR+ EL L +A + Sbjct: 954 PELVASSTVQGGRERGLVLHKLMEEVLNGETGDSHAALSARAGELVRALGIVPVADPTAG 1013 Query: 985 IDVRELASTALRTLRLPDVDRYRGRLVAEVPVYG 1018 + ELA RTLRLP++ R L AE PVY Sbjct: 1014 LSPEELAGCVGRTLRLPEIAALRPALSAEFPVYA 1047