BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0080.0003.p         (83 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EGE59914.1| helix-turn-helix domain-containing protein [Rhizo...   134   6e-30
ref|YP_004106861.1| helix-turn-helix domain-containing protein [...   125   2e-27
ref|YP_004611343.1| XRE family transcriptional regulator [Mesorh...   123   1e-26
ref|NP_768626.1| transcriptional regulator [Bradyrhizobium japon...    98   5e-19
gb|AEO48973.1| XRE family transcriptional regulator [Rhodospiril...    93   1e-17

>gb|EGE59914.1| helix-turn-helix domain-containing protein [Rhizobium etli
          CNPAF512]
          Length = 84

 Score =  134 bits (336), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 68/84 (80%), Positives = 77/84 (91%), Gaps = 1/84 (1%)

Query: 1  MTQQIARTEKQLGAILRRARKKAGLTQSDLGKNIHLRQGTVSRLEAGAPAVQLHTVMEAL 60
          M +Q+ARTEKQLGAILRRARK+A LTQ+DLG +IHLRQGTVSRLEAG PAVQL TVMEAL
Sbjct: 1  MNEQVARTEKQLGAILRRARKQARLTQTDLGAHIHLRQGTVSRLEAGEPAVQLRTVMEAL 60

Query: 61 AALDLELVVRPRSKAN-XDIEDIF 83
          AAL+LELV+RPR+KA+  DIEDIF
Sbjct: 61 AALNLELVIRPRTKASAADIEDIF 84


>ref|YP_004106861.1| helix-turn-helix domain-containing protein [Rhodopseudomonas
          palustris DX-1]
 gb|ADU42128.1| helix-turn-helix domain protein [Rhodopseudomonas palustris DX-1]
          Length = 84

 Score =  125 bits (314), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 65/84 (77%), Positives = 72/84 (85%), Gaps = 1/84 (1%)

Query: 1  MTQQIARTEKQLGAILRRARKKAGLTQSDLGKNIHLRQGTVSRLEAGAPAVQLHTVMEAL 60
          M  QIAR EKQLGAILRRARK+AGLTQ  LG++IHLRQ TVSRLEAG PA+QL T+M AL
Sbjct: 1  MPDQIARNEKQLGAILRRARKQAGLTQGSLGEHIHLRQATVSRLEAGEPAIQLRTLMAAL 60

Query: 61 AALDLELVVRPRSK-ANXDIEDIF 83
          +ALDLELVVRPRSK A  DIED+F
Sbjct: 61 SALDLELVVRPRSKAAAADIEDLF 84


>ref|YP_004611343.1| XRE family transcriptional regulator [Mesorhizobium opportunistum
          WSM2075]
 gb|AEH87249.1| transcriptional regulator, XRE family [Mesorhizobium
          opportunistum WSM2075]
          Length = 84

 Score =  123 bits (308), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 64/84 (76%), Positives = 70/84 (83%), Gaps = 1/84 (1%)

Query: 1  MTQQIARTEKQLGAILRRARKKAGLTQSDLGKNIHLRQGTVSRLEAGAPAVQLHTVMEAL 60
          MT QIAR  KQLGAILRRARK AGLTQ  LG  IHLRQGTVSRLEAG PA+QL T+M AL
Sbjct: 1  MTDQIARNAKQLGAILRRARKNAGLTQGSLGNQIHLRQGTVSRLEAGEPAMQLRTLMAAL 60

Query: 61 AALDLELVVRPRSK-ANXDIEDIF 83
          +ALDLELVVR RSK ++ DIED+F
Sbjct: 61 SALDLELVVRARSKGSSADIEDLF 84


>ref|NP_768626.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gb|AAG60956.1|AF322013_75 ID619 [Bradyrhizobium japonicum]
 dbj|BAC47251.1| bsl1986 [Bradyrhizobium japonicum USDA 110]
          Length = 83

 Score = 97.8 bits (242), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 49/80 (61%), Positives = 63/80 (78%), Gaps = 1/80 (1%)

Query: 5  IARTEKQLGAILRRARKKAGLTQSDLGKNIHLRQGTVSRLEAGAPAVQLHTVMEALAALD 64
          IART +Q+GA +RR R++  LTQ DLG+ +H RQ TVS+LEAG PA QL  +M+ALAALD
Sbjct: 4  IARTPQQIGAGIRRYRRQKKLTQGDLGEKMHARQATVSKLEAGEPATQLRILMDALAALD 63

Query: 65 LELVVRPRSKANXD-IEDIF 83
          LELV+RPR+K   + IED+F
Sbjct: 64 LELVIRPRTKLTAEAIEDLF 83


>gb|AEO48973.1| XRE family transcriptional regulator [Rhodospirillum rubrum F11]
          Length = 81

 Score = 92.8 bits (229), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/80 (58%), Positives = 60/80 (75%), Gaps = 1/80 (1%)

Query: 5  IARTEKQLGAILRRARKKAGLTQSDLGKNIHLRQGTVSRLEAGAPAVQLHTVMEALAALD 64
          IART KQ+GA +RR R+K  LTQ+DLG+   LRQ TVS +EAG P  Q+ T+ + LAALD
Sbjct: 2  IARTPKQIGAAIRRQRRKLALTQADLGEQTKLRQATVSAVEAGEPGTQIRTLCDILAALD 61

Query: 65 LELVVRPRSKANXD-IEDIF 83
          LE V++PR+KA+ D I DIF
Sbjct: 62 LEFVIQPRTKASVDEIGDIF 81