BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0080.0001.p         (178 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_767036.1| hypothetical protein blr0396 [Bradyrhizobium ja...   252   2e-65
ref|YP_001208808.1| CRP/FNR family transcriptional regulator [Br...   194   4e-48
ref|YP_001236707.1| CRP/FNR family transcriptional regulator [Br...   192   2e-47
ref|NP_773101.1| hypothetical protein bll6461 [Bradyrhizobium ja...   131   5e-29
ref|NP_767035.1| hypothetical protein blr0395 [Bradyrhizobium ja...   130   6e-29

>ref|NP_767036.1| hypothetical protein blr0396 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC45661.1| blr0396 [Bradyrhizobium japonicum USDA 110]
          Length = 260

 Score =  252 bits (643), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 124/141 (87%), Positives = 131/141 (92%)

Query: 1   MIGRDSLLGALTAVGDTCALNTAVVLVPGAASVMDLDRLRIAAEQSATLRTLLTRHGLAV 60
           MIGRDSLLG L+ +GDTCALNTA+VLVPG ASVMDLDRLRIAA+QS TLRTLLTRHGLAV
Sbjct: 97  MIGRDSLLGTLSTMGDTCALNTAIVLVPGVASVMDLDRLRIAADQSGTLRTLLTRHGLAV 156

Query: 61  YAQMQQTAGCNAAHPVVSRLSRCLLHTHDLSGDHRLPLTQEAMAQVIGARRNSVSLVANT 120
           YAQ+QQTAGCNAAHPV SRLSRCLLHTHDLSGD+RL LTQEAMAQ+IGARRNSVSLVANT
Sbjct: 157 YAQVQQTAGCNAAHPVESRLSRCLLHTHDLSGDYRLLLTQEAMAQMIGARRNSVSLVANT 216

Query: 121 LQQANLIRYSRGQIQILNLHG 141
           LQQAN I YSRG IQILNL G
Sbjct: 217 LQQANFIHYSRGHIQILNLDG 237


>ref|YP_001208808.1| CRP/FNR family transcriptional regulator [Bradyrhizobium sp. ORS
           278]
 emb|CAL80593.1| Putative transcriptional regulator, Crp/Fnr family [Bradyrhizobium
           sp. ORS 278]
          Length = 240

 Score =  194 bits (493), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 94/143 (65%), Positives = 118/143 (82%), Gaps = 2/143 (1%)

Query: 1   MIGRDSLLGALT--AVGDTCALNTAVVLVPGAASVMDLDRLRIAAEQSATLRTLLTRHGL 58
           MIGRDS  G+++  A GD   LN+A VLVPG+AS++D+DR+R AAEQS+T R+ + RH L
Sbjct: 72  MIGRDSFFGSMSLLAGGDPIVLNSAAVLVPGSASIVDIDRVRAAAEQSSTFRSQMLRHAL 131

Query: 59  AVYAQMQQTAGCNAAHPVVSRLSRCLLHTHDLSGDHRLPLTQEAMAQVIGARRNSVSLVA 118
           AVY Q QQTAGCNAAH V SRL+RCLL THDLSG ++L +TQE++AQ+IGARRNSVSLVA
Sbjct: 132 AVYVQSQQTAGCNAAHTVESRLARCLLQTHDLSGGNKLYITQESLAQMIGARRNSVSLVA 191

Query: 119 NTLQQANLIRYSRGQIQILNLHG 141
           +TLQQA+ I YSRG I+I++L G
Sbjct: 192 STLQQADFIHYSRGHIEIMDLEG 214


>ref|YP_001236707.1| CRP/FNR family transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gb|ABQ32801.1| Putative transcriptional regulator, Crp/Fnr family [Bradyrhizobium
           sp. BTAi1]
          Length = 238

 Score =  192 bits (487), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 94/143 (65%), Positives = 117/143 (81%), Gaps = 2/143 (1%)

Query: 1   MIGRDSLLGALTAVG--DTCALNTAVVLVPGAASVMDLDRLRIAAEQSATLRTLLTRHGL 58
           MIGRDS  G+++ +G  ++  LNTA VLVPGAASV+D++R+R AAEQS T R  + RH L
Sbjct: 72  MIGRDSFFGSMSLLGGAESLVLNTAAVLVPGAASVVDIERVRNAAEQSGTFRAQMLRHAL 131

Query: 59  AVYAQMQQTAGCNAAHPVVSRLSRCLLHTHDLSGDHRLPLTQEAMAQVIGARRNSVSLVA 118
           AVY Q QQTAGCNAAH V SRL+RCLL THDLSG ++L +TQE++AQ+IGARRNSVSLVA
Sbjct: 132 AVYLQSQQTAGCNAAHTVESRLARCLLQTHDLSGGNKLYITQESLAQMIGARRNSVSLVA 191

Query: 119 NTLQQANLIRYSRGQIQILNLHG 141
           +TLQQA+ I YSRG I+I++L G
Sbjct: 192 STLQQADFIHYSRGHIEIIDLEG 214


>ref|NP_773101.1| hypothetical protein bll6461 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC51726.1| bll6461 [Bradyrhizobium japonicum USDA 110]
          Length = 144

 Score =  131 bits (329), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 66/117 (56%), Positives = 85/117 (72%)

Query: 23  AVVLVPGAASVMDLDRLRIAAEQSATLRTLLTRHGLAVYAQMQQTAGCNAAHPVVSRLSR 82
           AVVLVPG A  ++  RLR  A++S   R  LTRH  A++ Q QQ+ GCNA+H V +RL+R
Sbjct: 3   AVVLVPGLALQIEAARLRALAQRSVEFRDGLTRHSQALFVQAQQSVGCNASHSVEARLAR 62

Query: 83  CLLHTHDLSGDHRLPLTQEAMAQVIGARRNSVSLVANTLQQANLIRYSRGQIQILNL 139
            LL   DLSG  R  LTQE MA++IG RRNSVS VA+ LQ+AN+IR+SRG I+I+N+
Sbjct: 63  WLLRVRDLSGRDRFKLTQELMAEMIGVRRNSVSFVAHALQEANVIRFSRGHIEIVNV 119


>ref|NP_767035.1| hypothetical protein blr0395 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC45660.1| blr0395 [Bradyrhizobium japonicum USDA 110]
          Length = 236

 Score =  130 bits (328), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 68/139 (48%), Positives = 94/139 (67%)

Query: 1   MIGRDSLLGALTAVGDTCALNTAVVLVPGAASVMDLDRLRIAAEQSATLRTLLTRHGLAV 60
           M+GRDS++G+  A+ D  A   AVVL PG AS++++   R  A  S   R L+ RH   +
Sbjct: 72  MLGRDSVVGSGAALADGIAPADAVVLFPGTASMLEIAAFRTIAAASVPFRNLMVRHEQVL 131

Query: 61  YAQMQQTAGCNAAHPVVSRLSRCLLHTHDLSGDHRLPLTQEAMAQVIGARRNSVSLVANT 120
            A  QQ+  CN  HPV +RL+R LL   DLS    LPLTQE +AQ++G RRN++SLVA+ 
Sbjct: 132 LAHAQQSLLCNTLHPVEARLARWLLRARDLSDSAILPLTQETLAQMMGVRRNAISLVAHA 191

Query: 121 LQQANLIRYSRGQIQILNL 139
           LQ+A +IRY+RGQI+I++L
Sbjct: 192 LQRAGIIRYTRGQIEIIDL 210