BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0079.0005.p (137 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_769406.1| cbb3 oxidase subunit III [Bradyrhizobium japoni... 238 2e-61 ref|YP_778956.1| cytochrome c oxidase, cbb3-type subunit III [Rh... 234 4e-60 ref|YP_001204503.1| cytochrome-c oxidase fixP chain [Bradyrhizob... 228 3e-58 ref|ZP_08628819.1| cytochrome c oxidase subunit CcoP [Bradyrhizo... 228 3e-58 ref|YP_001238833.1| cytochrome-c oxidase fixP chain [Bradyrhizob... 225 2e-57 >ref|NP_769406.1| cbb3 oxidase subunit III [Bradyrhizobium japonicum USDA 110] sp|Q03075.1|FIXP_BRAJA RecName: Full=Cbb3-type cytochrome c oxidase subunit FixP; Short=Cbb3-Cox subunit FixP; AltName: Full=C-type cytochrome FixP; Short=Cyt c(FixP); AltName: Full=Cytochrome c oxidase subunit III gb|AAA26206.1| membrane-anchored protein [Bradyrhizobium japonicum] emb|CAA06282.1| cbb3 oxidase, subunit III [Bradyrhizobium japonicum] dbj|BAC48031.1| cbb3 oxidase subunit III [Bradyrhizobium japonicum USDA 110] Length = 290 Score = 238 bits (607), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 112/137 (81%), Positives = 123/137 (89%) Query: 1 MQTIQFGARSGHAKTHEGQMLAFGRDGVLKKDEIVTVANYVRSLSGLSTAPKFDAAAGKK 60 MQTIQFGARSGHAKTHEGQMLAFG+DGVLK DEIVTVANYVRSLSGL T +DAA G+K Sbjct: 154 MQTIQFGARSGHAKTHEGQMLAFGKDGVLKGDEIVTVANYVRSLSGLPTRKGYDAAKGEK 213 Query: 61 LFTENCTSCHGDNGKGNPELGAPNLTDQIWLYGSDEGALVETITNGRAGVMPAWVGRLDP 120 +F ENC +CHGD GKGN E+GAPNLTD+IWLYGSDE AL+ETI+ GRAGVMPAW GRLDP Sbjct: 214 IFVENCVACHGDGGKGNQEMGAPNLTDKIWLYGSDEAALIETISQGRAGVMPAWEGRLDP 273 Query: 121 VTVKALAVYVHSLGGGK 137 T+KA+AVYVHSLGGGK Sbjct: 274 STIKAMAVYVHSLGGGK 290 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 2/51 (3%) Query: 56 AAGKKLFTENCTSCHGDNGKGNPELGAPNLTDQIWLYGSDEGALVETITNG 106 A GK +F +NC CHG G G G PNL D WL+G +++TI G Sbjct: 112 AKGKTVFGDNCAPCHGSGGAGAK--GFPNLNDDDWLWGGTLDQIMQTIQFG 160 >ref|YP_778956.1| cytochrome c oxidase, cbb3-type subunit III [Rhodopseudomonas palustris BisA53] gb|ABJ03976.1| cytochrome c oxidase, cbb3-type, subunit III [Rhodopseudomonas palustris BisA53] Length = 293 Score = 234 bits (596), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 108/137 (78%), Positives = 122/137 (89%) Query: 1 MQTIQFGARSGHAKTHEGQMLAFGRDGVLKKDEIVTVANYVRSLSGLSTAPKFDAAAGKK 60 M+TIQFGARSGHA+ HEGQMLAFG+DGVLK DEIV VANYVRSLSGLST P FD AAG+K Sbjct: 157 MKTIQFGARSGHAEAHEGQMLAFGKDGVLKPDEIVVVANYVRSLSGLSTRPGFDKAAGEK 216 Query: 61 LFTENCTSCHGDNGKGNPELGAPNLTDQIWLYGSDEGALVETITNGRAGVMPAWVGRLDP 120 +FTENC CHG+N KGN + GAPNLTD+IWLYGSDE ++ET+TNGRAGVMP+W GRLDP Sbjct: 217 IFTENCAVCHGENAKGNLDFGAPNLTDRIWLYGSDEATIIETVTNGRAGVMPSWEGRLDP 276 Query: 121 VTVKALAVYVHSLGGGK 137 T+KA+AVYVHSLGGGK Sbjct: 277 GTIKAMAVYVHSLGGGK 293 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 44/90 (48%), Gaps = 12/90 (13%) Query: 56 AAGKKLFTENCTSCHGDNGKGNPELGAPNLTDQIWLYGSDEGALVETITNG-RAGVMPAW 114 A GK +F +NC CHG G+ G PNL D W++G +++TI G R+G A Sbjct: 115 ARGKAVFGDNCAPCHGTGAAGSK--GYPNLNDDDWIWGGSLDQIMKTIQFGARSGHAEAH 172 Query: 115 VGR---------LDPVTVKALAVYVHSLGG 135 G+ L P + +A YV SL G Sbjct: 173 EGQMLAFGKDGVLKPDEIVVVANYVRSLSG 202 >ref|YP_001204503.1| cytochrome-c oxidase fixP chain [Bradyrhizobium sp. ORS 278] sp|A4YQU0.1|FIXP_BRASO RecName: Full=Cbb3-type cytochrome c oxidase subunit FixP; Short=Cbb3-Cox subunit FixP; AltName: Full=C-type cytochrome FixP; Short=Cyt c(FixP); AltName: Full=Cytochrome c oxidase subunit III emb|CAL76266.1| cytochrome-c oxidase fixP chain [Bradyrhizobium sp. ORS 278] Length = 290 Score = 228 bits (580), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 105/136 (77%), Positives = 117/136 (86%) Query: 2 QTIQFGARSGHAKTHEGQMLAFGRDGVLKKDEIVTVANYVRSLSGLSTAPKFDAAAGKKL 61 QT+ +G RSGH KT EGQMLAFG+DG LK EI+TVANYVRSLSGL T +DAAAG K+ Sbjct: 155 QTLLYGVRSGHPKTREGQMLAFGKDGTLKPAEIITVANYVRSLSGLPTRQGYDAAAGAKI 214 Query: 62 FTENCTSCHGDNGKGNPELGAPNLTDQIWLYGSDEGALVETITNGRAGVMPAWVGRLDPV 121 F ENC +CHGDN KGNPE+GAPNLTD+IWLYGSDE L+ETITNGRAGVMPAW GRLDP Sbjct: 215 FAENCVACHGDNAKGNPEVGAPNLTDKIWLYGSDEATLIETITNGRAGVMPAWEGRLDPT 274 Query: 122 TVKALAVYVHSLGGGK 137 T+KA+AVYVHSLGGGK Sbjct: 275 TIKAMAVYVHSLGGGK 290 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 57/120 (47%), Gaps = 17/120 (14%) Query: 29 LKKDEIVTVANYVRSLSGLSTAPKFDA---AAGKKLFTENCTSCHGDNGKGNPELGAPNL 85 ++ D++ +A SL+ + P+ A A GK +F +NC +CHG G G PNL Sbjct: 84 IRGDKMAALA--TASLADIEKDPQMLALARAKGKTVFGDNCAACHGTGAAGAK--GFPNL 139 Query: 86 TDQIWLYGSDEGALVETITNG--------RAGVMPAW--VGRLDPVTVKALAVYVHSLGG 135 D WL+G + +T+ G R G M A+ G L P + +A YV SL G Sbjct: 140 NDDDWLWGGSLEQIQQTLLYGVRSGHPKTREGQMLAFGKDGTLKPAEIITVANYVRSLSG 199 >ref|ZP_08628819.1| cytochrome c oxidase subunit CcoP [Bradyrhizobiaceae bacterium SG-6C] gb|EGP08178.1| cytochrome c oxidase subunit CcoP [Bradyrhizobiaceae bacterium SG-6C] Length = 291 Score = 228 bits (580), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 107/136 (78%), Positives = 117/136 (86%) Query: 2 QTIQFGARSGHAKTHEGQMLAFGRDGVLKKDEIVTVANYVRSLSGLSTAPKFDAAAGKKL 61 TI FG RSGHAK HEG MLAFG+DG+LK D+IV VANYVRSLSGLSTA FD AAG+K+ Sbjct: 156 NTIAFGVRSGHAKAHEGAMLAFGKDGILKPDQIVAVANYVRSLSGLSTAQGFDKAAGQKI 215 Query: 62 FTENCTSCHGDNGKGNPELGAPNLTDQIWLYGSDEGALVETITNGRAGVMPAWVGRLDPV 121 F ENC +CHG+N KGN E GAP+LTDQIWLYGSDE L+ETITNGRAGVMPAW GRLDP Sbjct: 216 FAENCAACHGENAKGNIEQGAPDLTDQIWLYGSDEKILIETITNGRAGVMPAWTGRLDPA 275 Query: 122 TVKALAVYVHSLGGGK 137 T+KALAVYVHSLGGGK Sbjct: 276 TIKALAVYVHSLGGGK 291 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 34/90 (37%), Positives = 40/90 (44%), Gaps = 12/90 (13%) Query: 56 AAGKKLFTENCTSCHGDNGKGNPELGAPNLTDQIWLYGSDEGALVETITNG--------R 107 A GK F +NC CHG G G PNL D WL+G + TI G Sbjct: 113 ARGKAAFGDNCAPCHGSGAAGAK--GYPNLNDDEWLWGGSLDQIGNTIAFGVRSGHAKAH 170 Query: 108 AGVMPAW--VGRLDPVTVKALAVYVHSLGG 135 G M A+ G L P + A+A YV SL G Sbjct: 171 EGAMLAFGKDGILKPDQIVAVANYVRSLSG 200 >ref|YP_001238833.1| cytochrome-c oxidase fixP chain [Bradyrhizobium sp. BTAi1] gb|ABQ34927.1| cytochrome-c oxidase fixP chain [Bradyrhizobium sp. BTAi1] Length = 290 Score = 225 bits (573), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 104/136 (76%), Positives = 116/136 (85%) Query: 2 QTIQFGARSGHAKTHEGQMLAFGRDGVLKKDEIVTVANYVRSLSGLSTAPKFDAAAGKKL 61 QT+ +G RSGH KT EGQMLAFG+DGVLK EIVTVANYVR L+GL T +DA AG K+ Sbjct: 155 QTLLYGVRSGHPKTREGQMLAFGKDGVLKPAEIVTVANYVRELAGLPTRQGYDAKAGAKI 214 Query: 62 FTENCTSCHGDNGKGNPELGAPNLTDQIWLYGSDEGALVETITNGRAGVMPAWVGRLDPV 121 F ENC +CHGDN KGNPE+GAPNLTD+IWLYGSDE L+ETITNGRAGVMPAW GRLDP Sbjct: 215 FAENCVACHGDNAKGNPEVGAPNLTDKIWLYGSDEATLIETITNGRAGVMPAWEGRLDPT 274 Query: 122 TVKALAVYVHSLGGGK 137 T+KA+AVYVHSLGGGK Sbjct: 275 TIKAMAVYVHSLGGGK 290 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 36/106 (33%), Positives = 49/106 (46%), Gaps = 15/106 (14%) Query: 43 SLSGLSTAPKFDA---AAGKKLFTENCTSCHGDNGKGNPELGAPNLTDQIWLYGSDEGAL 99 SL+ + P+ A A GK +F +NC +CHG G G PNL D WL+G + Sbjct: 96 SLADIEKDPQMLALARAKGKTVFGDNCAACHGTGAAGAK--GFPNLNDDDWLWGGSLEQI 153 Query: 100 VETITNG--------RAGVMPAW--VGRLDPVTVKALAVYVHSLGG 135 +T+ G R G M A+ G L P + +A YV L G Sbjct: 154 QQTLLYGVRSGHPKTREGQMLAFGKDGVLKPAEIVTVANYVRELAG 199